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Expand unit testing #82

Closed
10 of 14 tasks
seananderson opened this issue May 3, 2022 · 0 comments
Closed
10 of 14 tasks

Expand unit testing #82

seananderson opened this issue May 3, 2022 · 0 comments

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@seananderson
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seananderson commented May 3, 2022

Here's a start based on the last report in rough order of importance.

  • anisotropy with delta models
  • sdmTMB_simulate() with IID or AR1 or RW fields
  • add_barrier_mesh
  • mcmc residuals type
  • simulate() with delta models and model = 1 or model = 2
  • some more cached parameter values, prediction values, and index values (add delta ones)
  • nlminb_loops
  • delta_truncated_nbinom1
  • tidy() with models that have breakpts
  • sanity() with high gradients or NAs for SEs or a random field sigma < 0.001
  • wide format get_cog
  • spread_sims basics
  • plot_pc_matern basics

  • Also, outside of the testthat folder (maybe within a folder within inst for now?): testing against VAST

Note, set:

Sys.setenv(NOT_CRAN = "true")

for covr to realize not on CRAN.

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