Description of the files :
- HCD-DS-2.tar.gz : HCS-DS-2 data set.
- msreduce.java : Java implementation of MS-REDUCE method.
for verification of the results we made use of crux toolkit, that can be found here : http://cruxtoolkit.sourceforge.net/
a basic java installation is required to build and run, build using:
run on a test dataset using:
java msreduce <input folder> <xx> <output folder> xx = percentage data to be retained e.g. 10, 20, 30. input folder = any of the unzipped test data set directories e.g. HCD-DS-2 output folder = path to output directory
Muaaz Gul Awan, Fahad Saeed, MS-REDUCE: an ultrafast technique for reduction of big mass spectrometry data for high-throughput processing, Bioinformatics, Volume 32, Issue 10, 15 May 2016, Pages 1518–1526, https://doi.org/10.1093/bioinformatics/btw023