Skip to content
master
Switch branches/tags
Code

Latest commit

 

Git stats

Files

Permalink
Failed to load latest commit information.
Type
Name
Latest commit message
Commit time
 
 
 
 
 
 
 
 
 
 
 
 

MSREDUCE

Description of the files :

  • HCD-DS-2.tar.gz : HCS-DS-2 data set.
  • msreduce.java : Java implementation of MS-REDUCE method.

for verification of the results we made use of crux toolkit, that can be found here : http://cruxtoolkit.sourceforge.net/

Usage

a basic java installation is required to build and run, build using:

javac msreduce.java

run on a test dataset using:

java msreduce <input folder> <xx> <output folder> 

xx = percentage data to be retained e.g. 10, 20, 30. 

input folder = any of the unzipped test data set directories e.g. HCD-DS-2

output folder = path to output directory

Related Article

Muaaz Gul Awan, Fahad Saeed, MS-REDUCE: an ultrafast technique for reduction of big mass spectrometry data for high-throughput processing, Bioinformatics, Volume 32, Issue 10, 15 May 2016, Pages 1518–1526, https://doi.org/10.1093/bioinformatics/btw023

About

source code for MSREDUCE

Resources

License

Releases

No releases published

Packages

No packages published

Languages