The IOCBio project provides open-source software that is developed in Laboratory of Systems Biology at Institute of Cybernetics. The project is created to publish the software, this includes distributing the source codes, continuing software development, supporting users as well as attracting users to contribute to the software.
Currently, the project provides access to the following software:
- IOCBioMicroscope - a Python package for deconvolving 3D microscope images, see DeconvolutionTutorial for an example, see also PyLibDeconv.
- IOCBioStrathKelvin - a wrapper to Strathkelvin Instruments 929 Oxygen System software.
- IOCBioSarcomereLength - a C library and Python package for estimating fundamental period of a sequence with an application to determining sarcomere length from microscopy images of cardiomyocytes.
- IOCBioOxygenIsotopeEquationGenerator - a Python module for generation of mass isotopologue equations.
In addition, we have created several independent software projects that we use together with the IOCBio project: