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Code accompanying the publication "Multiplexed protein maps link subcellular organization to cellular states", Gut et al., 2018, Science
IDRome and LCRome analysis
Please use https://github.com/uzh/gc3pie instead.
Main TissueMAPS repository that bundles different repositories.
Please use the upstream ElastiCluster repo instead.
A fork of CellProfiler1.0 developed by members of Pelkmans Lab https://www.pelkmanslab.org
Various utility functions and datatypes for SQLAlchemy.
A library of shared mostly MATLAB code used by canonical iBRAIN.
A version of canonical iBRAIN (2015) deployed on BRUTUS cluster
Use issue tracker to report general lab problem
How to write unittests according to lab code guide lines. A bunch of examples.
Please use the https://github.com/TissueMAPS/JtLibrary repository instead.
SingleCellClassification code prepared for transition of ClassifyGui + integration into iBRAIN UZH
A nimble workflow managing tool, at the core of iBRAIN framework.
Supplementary code for Infectome related projects and publications http://www.infectome.org/
Agent based model code and CP module
A toolbox for Enrichment or Depletion of Gene Ontology Classifications under Weighted Membership
Image analysis of object localization patterns within the single cell
Network analysis of large-scale RNAi screens with functional annotation enrichment of DAVID and STRING
Supervised machine learning in biological experimental imagery data for the automated classification of single-cell phenotypes.
Measure and correct cell population context effects in high-content screening