• Code accompanying the publication "Multiplexed protein maps link subcellular organization to cellular states", Gut et al., 2018, Science

    Matlab Updated Aug 2, 2018
  • Python Updated Jul 31, 2018
  • Python Updated Apr 13, 2017
  • IDRome and LCRome analysis

    Jupyter Notebook BSD-3-Clause Updated Apr 6, 2017
  • gc3pie Archived

    Forked from TissueMAPS/gc3pie

    Please use https://github.com/uzh/gc3pie instead.

    Python 18 Updated Dec 7, 2016
  • TissueMAPS Archived

    Main TissueMAPS repository that bundles different repositories.

    Updated Nov 17, 2016
  • Please use the upstream ElastiCluster repo instead.

    Python 105 Updated Oct 20, 2016
  • A fork of CellProfiler1.0 developed by members of Pelkmans Lab https://www.pelkmanslab.org

    Matlab GPL-2.0 1 issue needs help Updated Sep 27, 2016
  • Various utility functions and datatypes for SQLAlchemy.

    Python 139 Updated Aug 17, 2016
  • ImageBasedTranscriptomics

    Matlab 2 3 MIT Updated Jun 24, 2016
  • A library of shared mostly MATLAB code used by canonical iBRAIN.

    Matlab Updated Jun 10, 2016
  • A version of canonical iBRAIN (2015) deployed on BRUTUS cluster

    Shell Updated Jun 10, 2016
  • Use issue tracker to report general lab problem

    Updated Sep 21, 2015
  • How to write unittests according to lab code guide lines. A bunch of examples.

    Matlab 1 MIT Updated Aug 21, 2015
  • JtLib Archived

    Please use the https://github.com/TissueMAPS/JtLibrary repository instead.

    Matlab 1 Updated Jun 19, 2015
  • SingleCellClassification code prepared for transition of ClassifyGui + integration into iBRAIN UZH

    Matlab Updated Jun 10, 2015
  • A nimble workflow managing tool, at the core of iBRAIN framework.

    Python MIT Updated Apr 16, 2015
  • Supplementary code for Infectome related projects and publications http://www.infectome.org/

    Matlab MIT Updated Jan 30, 2015
  • Agent based model code and CP module

    Matlab Apache-2.0 Updated Jan 5, 2015
  • A toolbox for Enrichment or Depletion of Gene Ontology Classifications under Weighted Membership

    Java MIT Updated Aug 29, 2014
  • Image analysis of object localization patterns within the single cell

    Matlab 2 Updated May 15, 2014
  • CellProfiler-Modules

    Matlab 1 2 Updated Jul 1, 2013
  • Network analysis of large-scale RNAi screens with functional annotation enrichment of DAVID and STRING

    3 2 Updated May 16, 2013
  • Supervised machine learning in biological experimental imagery data for the automated classification of single-cell phenotypes.

    Matlab 2 2 Updated May 16, 2013
  • Measure and correct cell population context effects in high-content screening

    Matlab 1 Updated May 8, 2013