@pepkit

pepkit

Utilities for Portable Encapsulated Projects

Pinned repositories

  1. looper

    A job submitter that uses Portable Encapsulated Projects

    Python 5 2

  2. peppy

    A python-based project metadata manager for portable encapsulated projects

    Python 21 5

  3. pepenv

    PEP environment configuration. Standardized cluster resource manager configuration.

    Shell 3 2

  4. geofetch

    Builds a PEP from SRA or GEO accessions

    Python 3 2

  5. pepr

    An R-based project metadata manager for portable encapsulated projects

    R 2 3

  • R package that implements a class type for the PEP Project object use with biological data

    R Updated Oct 18, 2018
  • Some simple examples of PEP-compatible projects

    R Updated Oct 18, 2018
  • An R-based project metadata manager for portable encapsulated projects

    R 2 3 Updated Oct 17, 2018
  • pepkit website

    CSS 2 MIT Updated Oct 10, 2018
  • R Updated Oct 9, 2018
  • A job submitter that uses Portable Encapsulated Projects

    Python 5 2 BSD-2-Clause Updated Oct 5, 2018
  • A Hello World! example repository for looper

    Shell 1 Updated Oct 1, 2018
  • A python-based project metadata manager for portable encapsulated projects

    Python 21 5 BSD-2-Clause Updated Sep 25, 2018
  • Builds a PEP from SRA or GEO accessions

    Python 3 2 Updated Sep 17, 2018
  • PEP environment configuration. Standardized cluster resource manager configuration.

    Shell 3 2 Updated Jul 3, 2018
  • A collection of looper pipeline interfaces for common tasks

    Updated Feb 13, 2018
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