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README.md

geofetch logo

Build Status PEP compatible

geofetch is a command-line tool that downloads sequencing data and metadata from GEO and SRA and creates standard PEPs. geofetch is hosted at pypi and documentation is hosted at geofetch.databio.org (source in the /docs folder).

You can convert the result of geofetch into unmapped bam or fastq files with the included sraconvert command.