pepr package: Portable Encapsulated Projects in R
pepr is an R package for reading Portable Encapsulated Projects, or PEPs, in R. If you describe your project (configuration and samples) according to this format, you can load all project metadata into R using the
pepr package. To test
pepr, you can try loading one of the example PEPs.
Complete documentation and API for the
pepr R package is at code.databio.org/pepr.
Install from CRAN:
Load a project and explore metadata like this:
library("pepr") cfgPath = system.file( "extdata", "example_peps-master", "example_basic", "project_config.yaml", package = "pepr" ) p = Project(file = cfgPath) sampleTable(p) config(p)