Integrative Pipeline for Splicing Analyses (IPSA)
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Perl
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latex v3.3 Nov 18, 2015
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README.md
makefile

README.md

Copyright 2014 Dmitri Pervouchine (dp@crg.eu), Lab Roderic Guigo Bioinformatics and Genomics Group @ Centre for Genomic Regulation Parc de Recerca Biomedica: Dr. Aiguader, 88, 08003 Barcelona

This file is a part of the 'ipsa-full' package. 'ipsa-full' package is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

'ipsa-full' package is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with 'ipsa-full' package. If not, see http://www.gnu.org/licenses/.

============================================================================

Integrative Pipeline for Splicing Analyses (IPSA)

** This is a full version. A short version is available here https://github.com/pervouchine/ipsa**

  • DISCLAIMER

    Software and documentation in this release are very preliminary. Currently the pipeline is configured to download a few BAM files and run all computations for them, as an example.

  • SYNOPSIS

The integrative pipeline for splicing analyses does:

To install, do

git clone https://github.com/pervouchine/ipsa-full
cd ipsa-full
make all
  • EXAMPLES

An example of a pipeline buildout is available by running

make -f example.mk all
  • DOCUMENTATION

The documentation on the pipeline components is available in latex/ subdirectory The documentation on the sjcount utility is available in sjcount/latex/ subdirectory