Python simulation of a single-celled organism
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README
aminoAcids.txt
analyseGenomes.py
analysis.py
biochemistry.py
chemistry.py
dotPlot.py
drawPopulation.py
evolveCell.py
graphDrawer.py
solutions.py
testBinding.py
testCell.py
testProtein.py
timetest.py

README

Python simulation of a single-celled organism
Peter Collingridge 2010

> testCell.py
This is the top-level module
* Gives an example of how to create and update cells
* Runs simulation for 48000 units of time

> virtualCell.py
* Defines Solution and Cell classes
* Imports <biochemistry>

> biochemistry.py
* Contains all_metabolites list and all_reactions dictionary
* Defines Metabolite, Reaction and Protein classes

> graphDrawer.py
* Takes multiple time series and plots them as an SVG