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93	echo "blastn_rhodopsin_vs_three_human.xml"
94	blastn -query rhodopsin_nucs.fasta -subject three_human_mRNA.fasta -task megablast -evalue 1e-40 -out blastn_rhodopsin_vs_three_human.xml -outfmt 5

11	## Lines starting hash hash are comments. Galaxy will turn newlines into spaces
12	blastx
13	@QUERY@
14	@BLAST_DB_SUBJECT@
15	-query_gencode $query_gencode
16	-task $blast_type
17	-evalue $evalue_cutoff
18	@BLAST_OUTPUT@
19	@THREADS@
20	#if $adv_opts.adv_opts_selector=="advanced":
21	$adv_opts.strand

11	## Lines starting hash hash are comments. Galaxy will turn newlines into spaces
12	deltablast
13	@QUERY@
14	@BLAST_DB_SUBJECT@
15	-evalue $evalue_cutoff
16	@BLAST_OUTPUT@
17	@THREADS@
18	#if $adv_opts.adv_opts_selector=="advanced":
…
36	<expand macro="input_evalue" />
37	<expand macro="input_out_format" />
38
39	<expand macro="advanced_options">

12	blastp
13	@QUERY@
14	@BLAST_DB_SUBJECT@
15	-task $blast_type
16	-evalue $evalue_cutoff
17	@BLAST_OUTPUT@
18	@THREADS@
19	#if $adv_opts.adv_opts_selector=="advanced":
…
47	<expand macro="input_evalue" />
48	<expand macro="input_out_format" />
49	<expand macro="advanced_options">