{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":769327780,"defaultBranch":"main","name":"q2-thapbi-pict","ownerLogin":"peterjc","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2024-03-08T20:20:12.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/63959?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1717661065.0","currentOid":""},"activityList":{"items":[{"before":"f0cf6202a4130ee90850eb5aec7e37f2ac48a3b1","after":null,"ref":"refs/heads/pre-commit-ci-update-config","pushedAt":"2024-06-06T08:04:25.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"peterjc","name":"Peter Cock","path":"/peterjc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63959?s=80&v=4"}},{"before":"f8c5e51985a8c9754591766472b306051bad9765","after":"ebc0d19b3fde9eac63c799a3f6fb630fa3d249d3","ref":"refs/heads/main","pushedAt":"2024-06-06T08:04:24.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"peterjc","name":"Peter Cock","path":"/peterjc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63959?s=80&v=4"},"commit":{"message":"[pre-commit.ci] autoupdate\n\nupdates:\n- [github.com/astral-sh/ruff-pre-commit: v0.4.3 → v0.4.7](https://github.com/astral-sh/ruff-pre-commit/compare/v0.4.3...v0.4.7)\n- [github.com/codespell-project/codespell: v2.2.6 → v2.3.0](https://github.com/codespell-project/codespell/compare/v2.2.6...v2.3.0)","shortMessageHtmlLink":"[pre-commit.ci] autoupdate"}},{"before":null,"after":"f0cf6202a4130ee90850eb5aec7e37f2ac48a3b1","ref":"refs/heads/pre-commit-ci-update-config","pushedAt":"2024-06-03T16:26:09.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"pre-commit-ci[bot]","name":null,"path":"/apps/pre-commit-ci","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/68672?s=80&v=4"},"commit":{"message":"[pre-commit.ci] autoupdate\n\nupdates:\n- [github.com/astral-sh/ruff-pre-commit: v0.4.3 → v0.4.7](https://github.com/astral-sh/ruff-pre-commit/compare/v0.4.3...v0.4.7)\n- [github.com/codespell-project/codespell: v2.2.6 → v2.3.0](https://github.com/codespell-project/codespell/compare/v2.2.6...v2.3.0)","shortMessageHtmlLink":"[pre-commit.ci] autoupdate"}},{"before":"da44b15f62ff8573e77fce7ef24f2baa51c3daf6","after":"f8c5e51985a8c9754591766472b306051bad9765","ref":"refs/heads/main","pushedAt":"2024-05-24T12:54:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"peterjc","name":"Peter Cock","path":"/peterjc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63959?s=80&v=4"},"commit":{"message":"fixed docstring typo","shortMessageHtmlLink":"fixed docstring typo"}},{"before":"a4b6360df47f7028cb8d42f10560aa7fd05f7b5e","after":"da44b15f62ff8573e77fce7ef24f2baa51c3daf6","ref":"refs/heads/main","pushedAt":"2024-05-10T13:30:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"peterjc","name":"Peter Cock","path":"/peterjc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63959?s=80&v=4"},"commit":{"message":"Fix Zenodo badge","shortMessageHtmlLink":"Fix Zenodo badge"}},{"before":"0cb5cac253349b7bb200706461e9f2dfc55867e0","after":null,"ref":"refs/heads/pre-commit-ci-update-config","pushedAt":"2024-05-06T17:41:54.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"peterjc","name":"Peter Cock","path":"/peterjc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63959?s=80&v=4"}},{"before":"fbc4391f98848c4ad26faf85db46dff308fbd296","after":"a4b6360df47f7028cb8d42f10560aa7fd05f7b5e","ref":"refs/heads/main","pushedAt":"2024-05-06T17:41:53.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"peterjc","name":"Peter Cock","path":"/peterjc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63959?s=80&v=4"},"commit":{"message":"[pre-commit.ci] autoupdate\n\nupdates:\n- [github.com/pre-commit/pre-commit-hooks: v4.5.0 → v4.6.0](https://github.com/pre-commit/pre-commit-hooks/compare/v4.5.0...v4.6.0)\n- [github.com/astral-sh/ruff-pre-commit: v0.3.4 → v0.4.3](https://github.com/astral-sh/ruff-pre-commit/compare/v0.3.4...v0.4.3)\n- [github.com/pre-commit/mirrors-mypy: v1.9.0 → v1.10.0](https://github.com/pre-commit/mirrors-mypy/compare/v1.9.0...v1.10.0)","shortMessageHtmlLink":"[pre-commit.ci] autoupdate"}},{"before":null,"after":"0cb5cac253349b7bb200706461e9f2dfc55867e0","ref":"refs/heads/pre-commit-ci-update-config","pushedAt":"2024-05-06T16:26:08.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"pre-commit-ci[bot]","name":null,"path":"/apps/pre-commit-ci","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/68672?s=80&v=4"},"commit":{"message":"[pre-commit.ci] autoupdate\n\nupdates:\n- [github.com/pre-commit/pre-commit-hooks: v4.5.0 → v4.6.0](https://github.com/pre-commit/pre-commit-hooks/compare/v4.5.0...v4.6.0)\n- [github.com/astral-sh/ruff-pre-commit: v0.3.4 → v0.4.3](https://github.com/astral-sh/ruff-pre-commit/compare/v0.3.4...v0.4.3)\n- [github.com/pre-commit/mirrors-mypy: v1.9.0 → v1.10.0](https://github.com/pre-commit/mirrors-mypy/compare/v1.9.0...v1.10.0)","shortMessageHtmlLink":"[pre-commit.ci] autoupdate"}},{"before":"0715cf60118f046bbe787a58a1e05a4cfb4eec56","after":"fbc4391f98848c4ad26faf85db46dff308fbd296","ref":"refs/heads/main","pushedAt":"2024-05-06T15:18:26.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"peterjc","name":"Peter Cock","path":"/peterjc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63959?s=80&v=4"},"commit":{"message":"Add Zenodo DOI & metadata settings","shortMessageHtmlLink":"Add Zenodo DOI & metadata settings"}},{"before":"1092af521d574907691f9797aa32b05d9bc724e1","after":null,"ref":"refs/heads/pre-commit-ci-update-config","pushedAt":"2024-04-01T17:07:05.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"peterjc","name":"Peter Cock","path":"/peterjc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63959?s=80&v=4"}},{"before":"b3af39802d278c07a4495bc7e7c339aa78e0bdf3","after":"0715cf60118f046bbe787a58a1e05a4cfb4eec56","ref":"refs/heads/main","pushedAt":"2024-04-01T17:06:40.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"peterjc","name":"Peter Cock","path":"/peterjc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63959?s=80&v=4"},"commit":{"message":"Merge pull request #1 from peterjc/pre-commit-ci-update-config\n\n[pre-commit.ci] autoupdate","shortMessageHtmlLink":"Merge pull request #1 from peterjc/pre-commit-ci-update-config"}},{"before":null,"after":"1092af521d574907691f9797aa32b05d9bc724e1","ref":"refs/heads/pre-commit-ci-update-config","pushedAt":"2024-04-01T16:26:17.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"pre-commit-ci[bot]","name":null,"path":"/apps/pre-commit-ci","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/68672?s=80&v=4"},"commit":{"message":"[pre-commit.ci] autoupdate\n\nupdates:\n- [github.com/astral-sh/ruff-pre-commit: v0.3.0 → v0.3.4](https://github.com/astral-sh/ruff-pre-commit/compare/v0.3.0...v0.3.4)\n- [github.com/pre-commit/mirrors-mypy: v1.8.0 → v1.9.0](https://github.com/pre-commit/mirrors-mypy/compare/v1.8.0...v1.9.0)","shortMessageHtmlLink":"[pre-commit.ci] autoupdate"}},{"before":"859e8c3c88d0274c50292a7f2f42c67430687499","after":"b3af39802d278c07a4495bc7e7c339aa78e0bdf3","ref":"refs/heads/main","pushedAt":"2024-03-18T16:38:16.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"peterjc","name":"Peter Cock","path":"/peterjc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63959?s=80&v=4"},"commit":{"message":"Remove old comments","shortMessageHtmlLink":"Remove old comments"}},{"before":"063fefed7c362ba7e7c0d311aa4ad5738a91c0f7","after":"859e8c3c88d0274c50292a7f2f42c67430687499","ref":"refs/heads/main","pushedAt":"2024-03-13T15:50:54.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"peterjc","name":"Peter Cock","path":"/peterjc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63959?s=80&v=4"},"commit":{"message":"Be more consistent in hyphen vs underscore","shortMessageHtmlLink":"Be more consistent in hyphen vs underscore"}},{"before":"063fefed7c362ba7e7c0d311aa4ad5738a91c0f7","after":null,"ref":"refs/tags/v0.0.1","pushedAt":"2024-03-13T15:22:18.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"peterjc","name":"Peter Cock","path":"/peterjc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63959?s=80&v=4"}},{"before":"41cd44ea69ae56565741cfa158a910a1539d94ed","after":"063fefed7c362ba7e7c0d311aa4ad5738a91c0f7","ref":"refs/heads/main","pushedAt":"2024-03-13T15:20:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"peterjc","name":"Peter Cock","path":"/peterjc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63959?s=80&v=4"},"commit":{"message":"PyPI release process","shortMessageHtmlLink":"PyPI release process"}},{"before":"b19f7208ec201d81191b586bf55d198023a44690","after":"41cd44ea69ae56565741cfa158a910a1539d94ed","ref":"refs/heads/main","pushedAt":"2024-03-13T14:38:34.000Z","pushType":"push","commitsCount":7,"pusher":{"login":"peterjc","name":"Peter Cock","path":"/peterjc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63959?s=80&v=4"},"commit":{"message":"Change the primer argument from str to list[str]\n\nAs before, not the current Qiime type annotation\nconflicts with mypy conventions.","shortMessageHtmlLink":"Change the primer argument from str to list[str]"}},{"before":"c5a60c132578e5cc9ae70f3af5ff7c5473aff993","after":"b19f7208ec201d81191b586bf55d198023a44690","ref":"refs/heads/main","pushedAt":"2024-03-13T14:36:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"peterjc","name":"Peter Cock","path":"/peterjc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63959?s=80&v=4"},"commit":{"message":"Can't get recent THAPBI PICT for Python 3.8 via conda\n\nCurrently Qiime as of 2024.2 still uses Python 3.8 (they hope\r\nto update this later this year), which is no longer supported in\r\nthe recent BioConda and conda-forge packages.\r\n\r\nThat means we have to install THAPBI PICT via pip, which will\r\npull in Python dependencies like CutAdapt, but...\r\n\r\nWe still have to explicitly install flash from conda","shortMessageHtmlLink":"Can't get recent THAPBI PICT for Python 3.8 via conda"}},{"before":"f80c6565e111ffa681d24ee1e87b7b8c32570f21","after":"c5a60c132578e5cc9ae70f3af5ff7c5473aff993","ref":"refs/heads/main","pushedAt":"2024-03-13T13:52:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"peterjc","name":"Peter Cock","path":"/peterjc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63959?s=80&v=4"},"commit":{"message":"Use the older conda install syntax","shortMessageHtmlLink":"Use the older conda install syntax"}},{"before":"adfe9e93e32d083d2348ebd209b0448bdb4156a0","after":"f80c6565e111ffa681d24ee1e87b7b8c32570f21","ref":"refs/heads/main","pushedAt":"2024-03-13T12:50:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"peterjc","name":"Peter Cock","path":"/peterjc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63959?s=80&v=4"},"commit":{"message":"Will be trying pip as the main install route\n\nUsing Conda would need access to the Qiime2 channel,\r\nor to setup my own conda channel.","shortMessageHtmlLink":"Will be trying pip as the main install route"}},{"before":"5674e7b47273f4d1a94da588a1bab1ccbcde4798","after":"adfe9e93e32d083d2348ebd209b0448bdb4156a0","ref":"refs/heads/main","pushedAt":"2024-03-13T12:40:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"peterjc","name":"Peter Cock","path":"/peterjc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63959?s=80&v=4"},"commit":{"message":"Using main not master as default branch","shortMessageHtmlLink":"Using main not master as default branch"}},{"before":"f8c61ad0c6f7e88d3e1e4a0bc01da124d3b80d2f","after":"5674e7b47273f4d1a94da588a1bab1ccbcde4798","ref":"refs/heads/main","pushedAt":"2024-03-13T12:39:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"peterjc","name":"Peter Cock","path":"/peterjc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63959?s=80&v=4"},"commit":{"message":"Using main not master as default branch here","shortMessageHtmlLink":"Using main not master as default branch here"}},{"before":"9a80abeb502a538b14a9272d1517aeda5e307edf","after":"f8c61ad0c6f7e88d3e1e4a0bc01da124d3b80d2f","ref":"refs/heads/main","pushedAt":"2024-03-13T12:39:03.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"peterjc","name":"Peter Cock","path":"/peterjc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63959?s=80&v=4"},"commit":{"message":"Won't be able to use BioConda (or conda-forge)\n\nQiime2 currently uses their own conda channels","shortMessageHtmlLink":"Won't be able to use BioConda (or conda-forge)"}},{"before":"5f23319c3e0a09a7884c9291aab1c2cfacf94cb8","after":"9a80abeb502a538b14a9272d1517aeda5e307edf","ref":"refs/heads/main","pushedAt":"2024-03-12T17:16:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"peterjc","name":"Peter Cock","path":"/peterjc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63959?s=80&v=4"},"commit":{"message":"Capture and return the BIOM file directly\n\nThis now includes the observation metadata (i.e.\nthe actual sequence of each ASV) and sample metadata\n(i.e. things like raw FASTQ read count).","shortMessageHtmlLink":"Capture and return the BIOM file directly"}},{"before":"89f3c4c25507cbf52325a3e07a0355ed54630c6b","after":"5f23319c3e0a09a7884c9291aab1c2cfacf94cb8","ref":"refs/heads/main","pushedAt":"2024-03-11T21:46:37.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"peterjc","name":"Peter Cock","path":"/peterjc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63959?s=80&v=4"},"commit":{"message":"Add TODO for BIOM metadata","shortMessageHtmlLink":"Add TODO for BIOM metadata"}},{"before":"926cf63f5a4ad81545cf89df65ba08b999bf0eed","after":"89f3c4c25507cbf52325a3e07a0355ed54630c6b","ref":"refs/heads/main","pushedAt":"2024-03-09T00:02:57.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"peterjc","name":"Peter Cock","path":"/peterjc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63959?s=80&v=4"},"commit":{"message":"Always do the temp dir cleanup","shortMessageHtmlLink":"Always do the temp dir cleanup"}},{"before":"4909989403164c10c35132368f3778b4dc545be5","after":"926cf63f5a4ad81545cf89df65ba08b999bf0eed","ref":"refs/heads/main","pushedAt":"2024-03-08T20:25:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"peterjc","name":"Peter Cock","path":"/peterjc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63959?s=80&v=4"},"commit":{"message":"Install from source","shortMessageHtmlLink":"Install from source"}},{"before":null,"after":"4909989403164c10c35132368f3778b4dc545be5","ref":"refs/heads/main","pushedAt":"2024-03-08T20:21:01.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"peterjc","name":"Peter Cock","path":"/peterjc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63959?s=80&v=4"},"commit":{"message":"Capture FeatureTable[Frequency] and FeatureData[Sequence]","shortMessageHtmlLink":"Capture FeatureTable[Frequency] and FeatureData[Sequence]"}}],"hasNextPage":false,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEXetD0gA","startCursor":null,"endCursor":null}},"title":"Activity · peterjc/q2-thapbi-pict"}