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Contentmining of Open phytochemical literature for medicinal activities
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BJOC
dictionary Update processoil18620191015.tsv Oct 20, 2019
docker
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project/articleAnalysis
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AboutCEV.md
OPENNOTEBOOK_Science.md
README.md
Strategy.md
examplepapers.md
log.txt

README.md

CEVOpen Plant Oils

This is an OpenNotebook project to analyze the composition and activity of oils derived from plants as reported in Open Access literature.

Open Literature

Using EuropePMC and ContentMine's getpapers/ami up to 10,000 articles on essential oils are available. These report some/all of:

  • plant identity
  • literature survey of previously reported activities
  • oil chemical composition (by chemical name)
  • experimentals determination of activity (often against organisms)

Dictionaries

The literature is analyzed to suggests terms for inclusion in dictionaries. All terms are linked to Wikidata where possible

  • plant (species binomial or genus) from EssoilDB (cleaned)
  • plant part not yet transferred
  • [extraction methodology] and metadata not yet transferred
  • chemical compound from EssoildDB (cleaned)
  • activity (medicinal, other biological (e.g. insect repellent, pheromone))
  • targetOrganism (e.g. bacteria, viruses, fungi, parasites, vectors)

Searches

Exploratory and production searches.

Project

files relating to the management of the project.

BJOC paper

We are writing a paper as we go. Hopefully in time for a special issue.

Docker

We are building a Docker distribution of the software.

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