• Java Updated Oct 22, 2018
  • Contains a set of Galaxy Tools mostly written by the Bioinformatics core at NML

    Perl 6 7 GPL-2.0 Updated Oct 22, 2018
  • Rapidly subtype microbial genomes using single-nucleotide variant (SNV) subtyping schemes

    Python 3 1 Apache-2.0 Updated Oct 22, 2018
  • Python 4 1 Apache-2.0 Updated Oct 19, 2018
  • Canada’s Integrated Rapid Infectious Disease Analysis Platform for Genomic Epidemiology

    Java 18 9 Apache-2.0 Updated Oct 18, 2018
  • Conda recipes for the bioconda channel.

    Shell 1 859 Updated Oct 16, 2018
  • Python library that calculates viral drug resistance interpretations/scores based on given algorithm and mutation list files

    Python Apache-2.0 Updated Oct 12, 2018
  • Compile results generated from SISTR within IRIDA

    Python Apache-2.0 Updated Oct 9, 2018
  • Python 1 Apache-2.0 Updated Oct 3, 2018
  • R Script to parse the results of mykrobe predictor and present them in a LIMS compatible format.

    R Apache-2.0 Updated Sep 25, 2018
  • In silico prediction of E. coli serotype

    Python 4 2 Apache-2.0 Updated Sep 20, 2018
  • R Apache-2.0 Updated Sep 14, 2018
  • A GUI tool for uploading sequencing data from the Illumina MiSeq instrument to IRIDA

    Python 2 1 Apache-2.0 Updated Aug 31, 2018
  • Data intensive science for everyone.

    Python 477 Updated Aug 16, 2018
  • Create an IRIDA workflow from a Galaxy workflow file

    Clojure Updated Aug 15, 2018
  • Scans genome contigs against the ResFinder and PointFinder databases.

    Python 3 Apache-2.0 Updated Aug 13, 2018
  • MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies

    Python 5 4 Updated Aug 8, 2018
  • Front end examples for slurm-rest-api

    HTML Apache-2.0 Updated Aug 2, 2018
  • A REST interface to the slurm api and commands, as well as usage/load tracking and monitoring.

    Python 2 Apache-2.0 Updated Aug 2, 2018
  • A command-line tool for exporting data from IRIDA to the command line

    Perl 1 Apache-2.0 Updated Jul 20, 2018
  • Tool Shed repositories maintained and developed by the Intergalactic Utilities Commission

    HTML 183 MIT Updated May 10, 2018
  • R 1 Updated Apr 19, 2018
  • A Python tool for generating bootstrapping data from multiple sequence alignments.

    Python Apache-2.0 Updated Mar 9, 2018
  • Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database

    Jupyter Notebook 6 2 Apache-2.0 Updated Feb 8, 2018
  • A tool for generating rarefaction curve data from Kraken output.

    Python Apache-2.0 Updated Jan 30, 2018
  • SNVPhyl whole genome phylogenomics pipeline.

    Shell 1 Apache-2.0 Updated Jan 3, 2018
  • srst2

    Forked from katholt/srst2

    Short Read Sequence Typing for Bacterial Pathogens

    Python 35 Updated Dec 14, 2017
  • A command line interface for the SNVPhyl Galaxy pipeline.

    Python 1 Apache-2.0 Updated Sep 26, 2017
  • Tools/scripts for the SNVPhyl whole genome phylogenomics pipeline

    Perl Apache-2.0 Updated Sep 7, 2017
  • Curated virulence factors for Escherichia coli.

    Python Apache-2.0 Updated Aug 11, 2017