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Contains a set of Galaxy Tools mostly written by the Bioinformatics core at NML
Rapidly subtype microbial genomes using single-nucleotide variant (SNV) subtyping schemes
Canada’s Integrated Rapid Infectious Disease Analysis Platform for Genomic Epidemiology
Conda recipes for the bioconda channel.
Python library that calculates viral drug resistance interpretations/scores based on given algorithm and mutation list files
Compile results generated from SISTR within IRIDA
R Script to parse the results of mykrobe predictor and present them in a LIMS compatible format.
In silico prediction of E. coli serotype
A GUI tool for uploading sequencing data from the Illumina MiSeq instrument to IRIDA
Data intensive science for everyone.
Create an IRIDA workflow from a Galaxy workflow file
Scans genome contigs against the ResFinder and PointFinder databases.
MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
Front end examples for slurm-rest-api
A REST interface to the slurm api and commands, as well as usage/load tracking and monitoring.
A command-line tool for exporting data from IRIDA to the command line
Tool Shed repositories maintained and developed by the Intergalactic Utilities Commission
A Python tool for generating bootstrapping data from multiple sequence alignments.
Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database
A tool for generating rarefaction curve data from Kraken output.
SNVPhyl whole genome phylogenomics pipeline.
Short Read Sequence Typing for Bacterial Pathogens
A command line interface for the SNVPhyl Galaxy pipeline.
Tools/scripts for the SNVPhyl whole genome phylogenomics pipeline
Curated virulence factors for Escherichia coli.