@fbristow fbristow released this Jul 27, 2016 · 136 commits to development since this release

Assets 3

1.6.0 to 2.0.0

  • The UI is completely rewritten to better show what's happened with samples as they're uploaded, and to facilitate quality control implementation later.
  • Add an experimental auto-upload feature to automatically upload new runs as the sequencer finishes a run (monitoring run directories for CompletedJobInfo.xml).
  • Use the sample name and ID columns correctly in SampleSheet.csv: the sample name column is used for naming .fastq.gz files, the sample ID column is used for sending data to IRIDA.
  • Discard the cache of projects whenever sending data to the server.

@fbristow fbristow released this May 20, 2016 · 353 commits to development since this release

Assets 3

1.5.0 to 1.6.0

  • Add an about dialog to show the version number in the UI.
  • Changed the way that update notifications are shown: don't have an open in browser button, just create a link.
  • Changed the installer to uninstall the previous version before installing the new version (user settings are preserved).
  • Use the pubsub built into wxPython rather than pulling in an external version.

@fbristow fbristow released this Apr 15, 2016 · 384 commits to development since this release

Assets 3

1.4.0 to 1.5.0

  • Changed the Makefile so that the uploader can be hacked on in other Linux distros, specifically Arch (thanks to @eric.enns)
  • Fixed a UI issue where upload labels were overlapping in some cases (thanks to @eric.enns)
  • Fixed an issue where the uploader found files that had SampleSheet.csv anywhere in the filename (i.e., old_SampleSheet.csv), now it matches exactly SampleSheet.csv.
  • Changed the label Upload speed to Average upload speed to more accurately reflect the value we're reporting.
  • Added support for resuming uploads on failure. If the uploader fails when uploading a run, it will now skip any files that were already uploaded.
  • Added better error reporting when the uploader can't find the files for the sample by including the directory to help find issues.

@fbristow fbristow released this Feb 19, 2016 · 416 commits to development since this release

Assets 3
  • Fix a performance regression when scanning directories for fastq files (thanks to @ericenns)

@fbristow fbristow released this Feb 18, 2016 · 418 commits to development since this release

Assets 3
  • Fix a performance regression when scanning directories for fastq files (thanks to @ericenns)

@fbristow fbristow released this Feb 12, 2016 · 421 commits to development since this release

Assets 3

1.3.0 to 1.4.0

  • Use pytest for testing instead of the custom testing framework build arount unittest.
  • Add a feature to check the github repository for new releases.
  • Add a menu File > Exit menu for familiarity.
  • Use a wx widget for directory selection instead of building our own.
  • Sample sheet parsing happens with a state machine instead of guessing sections based on number of columns.
  • Extensive refactoring to move application functionality out of the GUI layer.
Dec 14, 2015
updated version number
Former-commit-id: e8ba8501e8fe4e7b12a120879e34a9e07601df4d
Nov 30, 2015
Merge branch 'bugfix/empty-fields-incorrectly-parsed-as-read-lengths'…
… into 'master'


Bugfix/empty fields incorrectly parsed as read lengths

This is a hotfix.

This fixes an issue where empty fields in the header were incorrectly being marked as read lengths.

So when an entry appeared as

    description,

The trailing comma was stripped, then the text `description` was marked as a value for read length because it was one column according to the CSV parser.

This is a hotfix-style request, please merge into dev and master.

See merge request !45

Former-commit-id: 3a7c6715256fba1a213803e08374053b8c2150d5
Nov 30, 2015
Bump version number.
Former-commit-id: 0a0d05c1f54a0f48df3fcc25b88698904b675440