IRIDA Pipeline Plugins
This repository contains a list of pipelines in IRIDA available as plugins.
To install each of these plugins, please download the appopriate JAR file from the Release link and copy to the directory
/etc/irida/plugins/ on a machine running IRIDA. Then, re-start IRIDA and you should see the pipeline appear in your list of pipelines.
Please see the IRIDA Pipeline Plugin documentation for more details.
|Example Plugin||https://github.com/phac-nml/irida-plugin-example||An Example plugin to be used as a template for developing IRIDA pipeline plugins.|
|AMR Detection||https://github.com/phac-nml/irida-plugin-amr-detection||A pipeline for the detection of antimicrobial resistance genes in bacterial isolates.|
We welcome the contribution of any pipelines you have developed for IRIDA. If you wish to include this pipeline in the list, please submit a Pull Request to this repository which adds a new entry to the table in the Plugins section. This will be in the format of:
| [NAME] | [REPOSITORY/URL] | [DESCRIPTION] | [RELEASE] |
[RELEASE] could be a direct link to your GitHub releases page (e.g., https://github.com/phac-nml/irida-plugin-amr-detection/releases), a link to the appropriate JAR file, or if you wish to make use of a badge for your release/repository, you can refer to https://shields.io/category/version.
Text in this repository is licensed under the Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/ license. Licenses for each IRIDA plugin are specific to each plugin and should be available from the respective code repositories.