phenoscanner allows user to query the PhenoScanner database of genotype-phenotype associations from inside R
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R
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DESCRIPTION
NAMESPACE
README.md

README.md

phenoscanner

phenoscanner allows users to query the PhenoScanner database of genotype-phenotype associations from inside R.

Functions

  • phenoscanner - this function allows users to query the PhenoScanner database from inside R

Installation

  1. install.packages("devtools")
  2. library(devtools)
  3. install_github("phenoscanner/phenoscanner")
  4. library(phenoscanner)

Examples

# SNP
res <- phenoscanner(snpquery="rs10840293")
head(res$results)
res$snps

# Gene
res <- phenoscanner(genequery="SWAP70")
head(res$results)
res$snps

# Region
res <- phenoscanner(regionquery="chr11:9685624-9774538")
head(res$results)
res$regions