Owlery is a set of REST web services which allow querying of an OWL reasoner containing a configured set of ontologies.
Updated July 10, 2014
OWL-based reasoning and data processing utilities for assembling the Phenoscape RDF knowledgebase.
Updated July 07, 2014
Web services application for the Phenoscape RDF knowledgebase.
Updated July 02, 2014
Miscellaneous queries which are useful for navigating Phenoscape KB data.
Updated June 18, 2014
NeXML data files annotated by Phenoscape curators.
Updated June 10, 2014
Phenex is an application for annotating character matrix files with ontology terms using the Entity-Quality syntax for describing phenotypes.
Updated June 06, 2014
Demonstration code for paper submission to the Bio-ontologies SIG Phenotype Day at ISMB 2014.
Updated May 23, 2014
Tool for querying a local copy of the Phenoscape KB and generating an inferred presence-absence data matrix, for a given taxon and anatomy specification.
Updated May 21, 2014
A little OWL in SPARQL.
Updated May 20, 2014
Syntactic sugar for programming with the OWL API in Scala.
Source for the CharaParser application, which uses natural language processing to propose EQ-based phenotype annotations.
Updated April 29, 2014
Updated April 21, 2014
Java implementation of the unsupervised bootstrapping algorithm used within the CharaParser application.
Updated April 04, 2014
forked from angular/angular-seed
Phenoscape KB web user interface.
Updated December 17, 2013
Convert a VUE document to an OWL ontology.
Updated July 31, 2013
Updated July 19, 2013
Web application for exploring the OBD-based Phenoscape Knowledgebase.
Updated July 11, 2013
Build scripts for generating the Phenoscape RDF knowledgebase.
Updated May 06, 2013
Reference images for the vertebrate skeleton annotated with Uberon terms.
Updated April 30, 2013
RDF/XML serialization of the Phenoscape RDF knowledgebase.
Updated March 19, 2013