• Promoting Phenoscape KB Data Access and Interoperability Codefest, 2017

    Updated Mar 22, 2017
  • A little OWL in SPARQL.

    Web Ontology Language 7 5 Updated Mar 14, 2017
  • A Scala DSL for programming with the OWL API.

    Scala 16 4 Updated Jan 6, 2017
  • An ontology covering the taxonomy of teleosts (bony fish). Now superseded by Vertebrate Taxonomy Ontology.

    Web Ontology Language Updated Dec 16, 2016
  • Web Ontology Language Updated Dec 8, 2016
  • Phenoscape KB web user interface.

    JavaScript 7,319 Updated Oct 27, 2016
  • Phenex is an application for annotating character matrix files with ontology terms using the Entity-Quality syntax for describing phenotypes.

    Java 3 2 Updated Oct 21, 2016
  • NeXML data files annotated by Phenoscape curators.

    Java 2 Updated Oct 19, 2016
  • Owlery is a set of REST web services which allow querying of an OWL reasoner containing a configured set of ontologies.

    Scala 1 1 Updated Aug 18, 2016
  • OWL-based reasoning and data processing utilities for assembling the Phenoscape RDF knowledgebase.

    Scala 4 5 Updated Aug 17, 2016
  • R package to make phenotypic traits from the Phenoscape Knowledgebase available from within R. To become part of rOpenSci.

    R 2 Updated Jul 17, 2016
  • Web application for exploring the OBD-based Phenoscape Knowledgebase.

    JavaScript 3 1 Updated Jul 1, 2016
  • Web services application for the Phenoscape RDF knowledgebase.

    Scala 1 2 Updated Jun 28, 2016
  • Tool for querying a local copy of the Phenoscape KB and generating an inferred presence-absence data matrix, for a given taxon and anatomy specification.

    Scala Updated Jun 6, 2016
  • Translations of data sources into OWL axioms for import into the Phenoscape Knowlegebase.

    Scala 1 Updated Jun 3, 2016
  • Taxonomic rank ontology

    Web Ontology Language 1 1 Updated Apr 15, 2016
  • Data visualization for Phenoscape database

    HTML 1 Updated Mar 22, 2016
  • Java 1 Updated Jan 23, 2016
  • The Vertebrate Taxonomy Ontology includes both extinct and extant vertebrates, aiming to provide one comprehensive hierarchy. The hierarchy backbone for extant taxa is based on the NCBI taxonomy. Since the NCBI taxonomy only includes species associated with archived genetic data, to complement this, we also incorporate taxonomic information acro…

    Updated Aug 24, 2015
  • JavaScript Updated May 20, 2015
  • Miscellaneous queries which are useful for navigating Phenoscape KB data.

    Updated Oct 31, 2014
  • Phenoscape website

    JavaScript 2 Updated Aug 6, 2014
  • Source for the CharaParser application, which uses natural language processing to propose EQ-based phenotype annotations.

    Java 6 3 Updated Jul 23, 2014
  • Demonstration code for paper submission to the Bio-ontologies SIG Phenotype Day at ISMB 2014.

    Shell Updated May 23, 2014
  • Java implementation of the unsupervised bootstrapping algorithm used within the CharaParser application.

    Java 3 2 Updated Apr 4, 2014
  • Convert a VUE document to an OWL ontology.

    Scala 2 Updated Jul 31, 2013
  • Build scripts for generating the Phenoscape RDF knowledgebase.

    Updated May 6, 2013
  • Reference images for the vertebrate skeleton annotated with Uberon terms.

    Updated Apr 30, 2013
  • RDF/XML serialization of the Phenoscape RDF knowledgebase.

    2 Updated Mar 19, 2013
  • Phenoscape data services web application for the legacy OBD-based knowledgebase.

    Java 2 Updated Jan 19, 2013