Pinned repositories

  1. scowl

    A Scala DSL for programming with the OWL API.

    Scala 28 6

  2. owlet

    A little OWL in SPARQL.

    Scala 7 5

  3. phenoscape-owl-tools

    OWL-based reasoning and data processing utilities for assembling the Phenoscape RDF knowledgebase.

    Scala 4 5

  4. Phenex

    Phenex is an application for annotating character matrix files with ontology terms using the Entity-Quality syntax for describing phenotypes.

    Java 6 2

  5. owlery

    Owlery is a set of REST web services which allow querying of an OWL reasoner containing a configured set of ontologies.

    Scala 6 6

  6. phenoscape-kb-services

    Web services application for the Phenoscape RDF knowledgebase.

    Scala 1 2

  • Build pipeline for the Phenoscape Knowledgebase

    Makefile MIT Updated Aug 20, 2018
  • OWL-based reasoning and data processing utilities for assembling the Phenoscape RDF knowledgebase.

    Scala 4 5 MIT Updated Aug 20, 2018
  • Phenex is an application for annotating character matrix files with ontology terms using the Entity-Quality syntax for describing phenotypes.

    Java 6 2 MIT Updated Aug 20, 2018
  • NeXML data files annotated by Phenoscape curators.

    Java 2 Updated Aug 14, 2018
  • Owlery is a set of REST web services which allow querying of an OWL reasoner containing a configured set of ontologies.

    Scala 6 6 MIT Updated Jun 28, 2018
  • Makefile Updated Jun 25, 2018
  • A Scala DSL for programming with the OWL API.

    Scala 28 6 MIT Updated Jun 19, 2018
  • A little OWL in SPARQL.

    Scala 7 5 MIT Updated Jun 5, 2018
  • Phenoscape KB web user interface.

    JavaScript 1 7,505 MIT Updated Jun 4, 2018
  • Project repo for Enabling Machine-actionable Semantics for Comparative Analysis of Trait Evolution (SCATE)

    Updated May 26, 2018
  • Redesigned Phenoscape KB web user interface — in development

    Scala MIT Updated May 25, 2018
  • Phenoscape website

    JavaScript 1 Updated May 25, 2018
  • Web services application for the Phenoscape RDF knowledgebase.

    Scala 1 2 MIT Updated May 23, 2018
  • Source for the CharaParser application, which uses natural language processing to propose EQ-based phenotype annotations.

    Java 7 3 MIT Updated May 14, 2018
  • Python 1 Updated Apr 11, 2018
  • Updated Mar 21, 2018
  • Translations of data sources into OWL axioms for import into the Phenoscape Knowlegebase.

    Scala 1 MIT Updated Mar 15, 2018
  • Connecting Open Tree and Phenoscape

    Jupyter Notebook Updated Jan 18, 2018
  • Linking data sets to Phenoscape

    Jupyter Notebook 1 MIT Updated Jan 9, 2018
  • exploration of using phenopackets to describe environments

    Shell 1 MIT Updated Dec 22, 2017
  • Phenoscape Ruby gem

    Ruby 2 MIT Updated Dec 20, 2017
  • Visualize fish with attributes

    Ruby MIT Updated Dec 18, 2017
  • python nexml to json-ld

    Python BSD-2-Clause Updated Dec 14, 2017
  • NeXML - JSON-LD converter

    Ruby 1 MIT Updated Dec 14, 2017
  • notes on an interoperable format for expressing phenotypic data for taxa

    2 1 BSD-2-Clause Updated Dec 14, 2017
  • nexld

    Forked from cboettig/nexld

    draft nexml to json-ld conversion. Perhaps better done in XSLT?

    R 2 Updated Dec 14, 2017
  • Web application for exploring the OBD-based Phenoscape Knowledgebase.

    JavaScript 3 1 MIT Updated Dec 14, 2017
  • Data processing utilities for assembling the legacy OBD-based Phenoscape knowledgebase.

    Java 2 MIT Updated Dec 14, 2017
  • Phenoscape data services web application for the legacy OBD-based knowledgebase.

    Java 2 MIT Updated Dec 14, 2017
  • The Ontology-Based Database (OBD) schema and API, used for fish.phenoscape.org

    Java Updated Dec 14, 2017