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Build pipeline for the Phenoscape Knowledgebase
OWL-based reasoning and data processing utilities for assembling the Phenoscape RDF knowledgebase.
Phenex is an application for annotating character matrix files with ontology terms using the Entity-Quality syntax for describing phenotypes.
NeXML data files annotated by Phenoscape curators.
Owlery is a set of REST web services which allow querying of an OWL reasoner containing a configured set of ontologies.
A Scala DSL for programming with the OWL API.
A little OWL in SPARQL.
Phenoscape KB web user interface.
Project repo for Enabling Machine-actionable Semantics for Comparative Analysis of Trait Evolution (SCATE)
Redesigned Phenoscape KB web user interface — in development
Web services application for the Phenoscape RDF knowledgebase.
Source for the CharaParser application, which uses natural language processing to propose EQ-based phenotype annotations.
Translations of data sources into OWL axioms for import into the Phenoscape Knowlegebase.
Connecting Open Tree and Phenoscape
Linking data sets to Phenoscape
exploration of using phenopackets to describe environments
Phenoscape Ruby gem
Visualize fish with attributes
python nexml to json-ld
NeXML - JSON-LD converter
notes on an interoperable format for expressing phenotypic data for taxa
draft nexml to json-ld conversion. Perhaps better done in XSLT?
Web application for exploring the OBD-based Phenoscape Knowledgebase.
Data processing utilities for assembling the legacy OBD-based Phenoscape knowledgebase.
Phenoscape data services web application for the legacy OBD-based knowledgebase.
The Ontology-Based Database (OBD) schema and API, used for fish.phenoscape.org