Skip to content
This repository

Phenex is an application for annotating character matrix files with ontology terms using the Entity-Quality syntax for describing phenotypes.

Fetching latest commit…

Cannot retrieve the latest commit at this time

README
Phenex is an application for annotating character matrix files with ontology terms. Character states can be annotated using the Entity-Quality syntax for ontologically describing phenotypes. In addition, taxon entries can be annotated with identifiers from a taxonomy ontology. Phenex saves ontology annotations alongside traditional character matrix data using the new NeXML format standard for evolutionary data. Phenex builds on Phenote and OBO-Edit from the OBO project.

Phenex has been initially developed as part of the Phenoscape project.

If you use Phenex in your research, please cite the following publication: Balhoff, James P., Wasila M. Dahdul, Cartik R. Kothari, Hilmar Lapp, John G. Lundberg, Paula Mabee, Peter E. Midford, Monte Westerfield, and Todd J. Vision. 2010. Phenex: Ontological Annotation of Phenotypic Diversity. PLoS ONE 5:e10500. [doi:10.1371/journal.pone.0010500](http://dx.doi.org/10.1371/journal.pone.0010500).
Something went wrong with that request. Please try again.