@phnmnl

PhenoMeNal

A comprehensive and standardised e-infrastructure for analysing medical metabolic phenotype data

Pinned repositories

  1. phenomenal-h2020

    Documentation and wiki for the PhenoMeNal H2020 E-Infrastructure Project

    14 4

  2. container-galaxy-k8s-runtime

    PhenoMeNal runtime for Galaxy running inside a container orchestrator

    JavaScript 4 16

  3. wft4galaxy

    Testing module for Galaxy workflows

    Python 8 4

  • PhenoMeNal deployment as a plugin for KubeNow

    Shell 1 1 Updated Aug 16, 2018
  • PhenoMeNal runtime for Galaxy running inside a container orchestrator

    JavaScript 4 16 Apache-2.0 Updated Aug 16, 2018
  • For the correction of isotopologue distributions for MS tracing data.

    Dockerfile MIT Updated Aug 11, 2018
  • Run MetFrag in batch mode in a container.

    Shell 1 Updated Aug 6, 2018
  • Basic plotting, data manipulation and processing of MS-based Proteomics data.

    R 2 Updated Aug 6, 2018
  • This repository contains scripts to manage the PhenoMeNal cloud CRE.

    Shell 1 7 Apache-2.0 Updated Aug 3, 2018
  • Cloud deploy kubenow fork for Dalcotidine release - A separate clone is needed instead of just a branch due to the inability of the TSI Portal backend to work against a different branch than master:(

    Shell 1 Apache-2.0 Updated Aug 3, 2018
  • R-program to read CDF files containing time course of mass spectra of 13C-labeled metabolites, and write the extracted spectra in a format appropriate for further analysis.

    Dockerfile 1 MIT Updated Aug 3, 2018
  • Dockerfile 1 Updated Aug 2, 2018
  • PhenoMeNal Cloud Research Environment

    TypeScript 2 Updated Aug 2, 2018
  • Container for the PhenoMeNal portal metadata backend

    Shell 1 Updated Aug 1, 2018
  • PHP 1 Updated Aug 1, 2018
  • Repository of tameNMR

    Shell Apache-2.0 Updated Aug 1, 2018
  • Escher-based visualization for fluxes and concentrations generated from fluxomics data sets

    JavaScript Updated Aug 1, 2018
  • Updated Jul 31, 2018
  • Tools for querying over MetaboLights ISA metadata

    Python 2 Updated Jul 31, 2018
  • The ProteoWizard Library and Tools are a set of modular and extensible open-source, cross-platform tools and software libraries that facilitate proteomics data analysis, developed by the Proteowizard Team at http://proteowizard.sourceforge.net/. This repository contains the Docker image to convert from many vendor raw data formats to mzML via Li…

    HTML 6 4 Apache-2.0 Updated Jul 31, 2018
  • Docker container for Iso2Flux

    Dockerfile 2 Updated Jul 31, 2018
  • Testing module for Galaxy workflows

    Python 8 4 2 issues need help Updated Jul 31, 2018
  • PhenoMeNal Helm Charts

    Smarty 2 5 Updated Jul 30, 2018
  • MAXScript 1 Updated Jul 30, 2018
  • Shell 1 Updated Jul 28, 2018
  • Dockerfile Updated Jul 28, 2018
  • Container for ICL's Power Analysis tool

    Shell 1 Updated Jul 25, 2018
  • PhenoMeNal Jupyter container.

    Dockerfile Apache-2.0 Updated Jul 25, 2018
  • Shell Updated Jul 25, 2018
  • convert zipped Bruker NMR raw data into tabulated txt file for BATMAN

    R 2 Updated Jul 25, 2018
  • Dockerfile 1 Updated Jul 25, 2018
  • Data intensive science for everyone.

    Python 3 462 Updated Jul 24, 2018
  • Dockerfile 1 Updated Jul 23, 2018