@phnmnl

PhenoMeNal

A comprehensive and standardised e-infrastructure for analysing medical metabolic phenotype data

Pinned repositories

  1. galaxy

    Forked from galaxyproject/galaxy

    Data intensive science for everyone.

    Python 1

  2. phenomenal-h2020

    Documentation and wiki for the PhenoMeNal H2020 E-Infrastructure Project

    4 1

  3. container-galaxy-k8s-runtime

    First version of a PhenoMeNal runtime for Galaxy running inside a container orchestrator

    Python

  • This repository contains scripts to manage the PhenoMeNal cloud VRE.

    Shell 1 Updated Feb 22, 2017
  • OpenMS preprocessing, and R downstream analysis with Jupyter.

    Jupyter Notebook 1 Updated Feb 22, 2017
  • nmrglue is a module for working with NMR data in Python.

    Shell Updated Feb 22, 2017
  • Container for xcms + various R scripts

    R Updated Feb 22, 2017
  • Dockerify SOAP-NMR - an R package for 1H-NMR data pre-treatment.

    Updated Feb 22, 2017
  • rNMR: open source software for identifying and quantifying metabolites in NMR spectra, developed by the team around Ian A. Lewis (University of Calgary)

    1 Updated Feb 22, 2017
  • R base container for susequent containers of R packages.

    Updated Feb 22, 2017
  • for containerizing the tool npc2batman

    Shell 1 Updated Feb 22, 2017
  • OpenMS software library for LC/MS data management and analyses

    Updated Feb 22, 2017
  • NMRPro reads and processes different types of NMR spectra.

    Shell Updated Feb 22, 2017
  • Shell 3 Updated Feb 22, 2017
  • Command line interface of MetFrag.

    Shell Updated Feb 22, 2017
  • Testing module for Galaxy workflows

    Python 3 1 Updated Feb 22, 2017
  • MetFamily: identification of regulated metabolite families.

    Shell 1 Updated Feb 22, 2017
  • R-based container for the quantitative analysis of NMR metabolomic profile data

    Updated Feb 22, 2017
  • Shell Updated Feb 21, 2017
  • PhenoMeNal Jupyter container.

    Updated Feb 21, 2017
  • For the correction of isotopologue distributions for MS tracing data.

    R Updated Feb 20, 2017
  • Deploy Kubernetes. Now!

    HCL 8 Updated Feb 20, 2017
  • Docker container for Iso2Flux

    Shell 1 Updated Feb 17, 2017
  • Updated Feb 17, 2017
  • First version of a PhenoMeNal runtime for Galaxy running inside a container orchestrator

    Python Updated Feb 17, 2017
  • Updated Feb 17, 2017
  • A docker image definition for the mzml2isa python tool

    Shell Updated Feb 17, 2017
  • a repo for a docker container for a microservice converting an MWTab to ISA-Tab format

    Python 1 Updated Feb 16, 2017
  • Shell 1 Updated Feb 16, 2017
  • Containerised PhenoMeNal Branded Galaxy

    Mako Updated Feb 16, 2017
  • Updated Feb 15, 2017
  • Matlab 1 Updated Feb 15, 2017
  • Python Updated Feb 15, 2017