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README.md

container-ms-vfetc

Version: 1.0.0

Short Description

A container image definition for ms-vfetc

Description

ms-vfetc is a tool to convert MS vendor export formats to a generic format that can easily be used in tools like R and Python/Pandas

Key features

  • Converts exports from MS vendors (Agilent, Sciex, Shimadzu, and Waters) to generic format (2D dataframe).

Functionality

  • Other Tools

Approaches

Instrument Data Types

Tool Authors

Container Contributors

Website

Git Repository

Installation

Usage Instructions

For direct docker usage:

Clone/download the container (after making sure you have Docker installed properly).

docker build -t vfetc .
docker run -it --rm -v $PWD/ms-vfetc/data/tmp:/out --name vfetc-running vfetc files=data/vendor/agilent/example_batch1.txt,data/vendor/agilent/example_batch2.txt outputfile=/out/agilent.txt 

Publications