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README.md

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W4M Metabolights Downloader

Version: 1.0.0

Short description

Metabolights downloader

Description

The module downloads a Metabolights study and output data in the W4M 3 files format:

  • Sample metadata.
  • Variable metadata.
  • Sample x variable matrix.

Key features

  • Data import.

Functionality

  • Other Tools.

Approaches

  • Metabolomics / Targeted
  • Metabolomics / Untargeted

Instrument Data Types

  • MS
  • NMR

Screenshots

Tool Authors

  • Pierrick Roger (CEA).

Container Contributors

  • Pierrick Roger (CEA).

Website

Git Repository

Installation

For local individual installation:

docker pull container-registry.phenomenal-h2020.eu/phnmnl/mtbls-dwnld

Usage Instructions

For direct docker usage:

docker run container-registry.phenomenal-h2020.eu/phnmnl/mtbls-dwnld -h

Publications

  • González-beltrán A, Neumann S, Maguire E, Sansone SA, Rocca-serra P. The Risa R/Bioconductor package: integrative data analysis from experimental metadata and back again. BMC Bioinformatics. 2014;15 Suppl 1:S11.
  • Giacomoni F, Le corguillé G, Monsoor M, et al. Workflow4Metabolomics: a collaborative research infrastructure for computational metabolomics. Bioinformatics. 2015;31(9):1493-5.