a repo for a docker container for a microservice converting an MWTab to ISA-Tab format
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README.md

container-mw2isa

Version:1.0.0

Short description

a container that given an NIH Metabolomics Workbench study identifier generates an ISA-Tab document from a MWTab file.

Description

a docker container for a microservice converting an MWTab file from NIH Metabolomics Workbench to ISA-Tab format given an identifier from that database (in the form ST\d+) and an output path. As an option, ISA syntactic validation may be invoked by providing two additional arguments: a boolean set to true to indicate validation is requested and a path to an ISA configuration.

Functionality

  • Other Tools

Tool Authors

Container Contributors

Git Repository

Installation

For local installation of the container:

docker pull docker-registry.phenomenal-h2020.eu/phnmnl/container-mw2isa

Future Developments

  • semantic alignment
  • data matrix validation

Publications

  • in preparation
  • Sansone, Susanna-Assunta, Rocca-Serra, Philippe, Gonzalez-Beltran, Alejandra, Johnson, David, & ISA Community. (2016, October 28). ISA Model and Serialization Specifications 1.0. Zenodo. http://doi.org/10.5281/zenodo.163640