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I've tried to create a new template:
phpdoc template:generate -t succont --name succont --author "Tobias Tom <email>"
then I ran the php doc command to generate the documentation
phpdoc -d ./Classes/ -t Build/Documentation --template succont/
Then I get the error:
Initializing transformer ..
String could not be parsed as XML
phpdoc is install through PEAR and is at version 2.0.0a12.
I have checked this in 2.0.0b6 and some errors did occur. I have fixed all errors and attempted to reproduce your issue. This is fixed in release 2.0.0b7 that will be released tomorrow