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A package for summarizing the output of Ecoevolity.
For some of the plots that pycoevolity produces, it uses the R packages ggplot2 and ggridges. So, if you want plotting by pycoevolity to be fully functional, and you don't already have R installed, you'll need to install it. Once R is in place, you can install the necessary packages from the R prompt using:
Installing pycoevolity with pip
If you have the Python package manager pip installed, you should be able to install pycoevolity using:
pip install git+git://github.com/phyletica/pycoevolity.git
If you don't have pip, I recommend you install it and use the command above to install pycoevolity. If that is not an option, you can download and install manually:
git clone https://github.com/phyletica/pycoevolity.git cd pycoevolity python setup.py install
If the last command fails with a "permission denied" error, and you have admin privileges on your computer, try:
sudo python setup.py install
If you don't have admin privileges, try:
python setup.py install --user
If you use the last command, pycoevolity will be installed in a directory
within your home directory.
Specifically, the command-line tools will probably be installed to a
.local/bin directory within your home folder.
You will probably have to add this directory to your PATH for your shell to
find and run the pycoevolity tools.
This work was supported by funding provided to Jamie Oaks from the National Science Foundation (grant numbers DBI 1308885 and DEB 1656004).
This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program. If not, see http://www.gnu.org/licenses/.
See "LICENSE.txt" for full terms and conditions of usage.