Skip to content
Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3
Java
Branch: master
Clone or download
Fetching latest commit…
Cannot retrieve the latest commit at this time.
Permalink
Type Name Latest commit message Commit time
Failed to load latest commit information.
data
lib
src
test
.classpath
.gitignore
.project
Changelog
LICENSE
README.md
build.xml
tag_release

README.md

.:: SpreaD3 ::.

Spatial Phylogenetic Reconstruction of Evolutionary Dynamics
Version: 0.9.7rc, 2016
Authors: Filip Bielejec, Guy Baele, Andrew Rambaut, Marc A. Suchard & Philippe 'The Wise' Lemey
Homepage: http://rega.kuleuven.be/cev/ecv/software/SpreaD3
License: LGPL

PURPOSE

SpreaD3 is a program supporting processing and visualizations of Bayesian phylogeographic models. This is the main program. Rendering engine can be found HERE

USAGE

SpreaD3 visualisation comprises 2-steps analysis. Parsing is done to a JSON file (data format), all the style choices are delegated to a second, renderering step, thus avoiding time consuming re-runs and facilitating different rendering possibilities.

SpreaD3 supports KML output for viewing in GoogleEarth as well as in-browser, interactive display of the data, driven by D3 libraries.

Detailed tutorial on using SpreaD3 can be found HERE.

LICENSE

This is free software; you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version.

This software is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the "GNU Lesser General Public License": http://www.gnu.org/licenses/lgpl.html for more details.

CONTRIBUTING

Very much welcomed. Fork this repo. Clone your fork. Start hacking. Make a pull request.

KNOWN BUGS/PROBLEMS

D3 line curvature listeners leave artifacts Time slicer json does not include axis attributes and won't render without a map.

You can’t perform that action at this time.