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rosaceAA

Overview

rosaceAA is an R package for analyzing growth-based deep mutational scanning screen data. It is built on rosace.

Installation

rosaceAA uses cmdstanr to run inference. Please ensure that cmdstanr is properly installed before installing rosaceAA. Below is a concise installation command; for complete details, please refer to the official website.

install.packages("cmdstanr", repos = c("https://mc-stan.org/r-packages/", getOption("repos")))

# use cmdstanr to install CmdStan, this requires a working C++ toolchain and compiler
library(cmdstanr)
install_cmdstan(cores = 4)

rosaceAA also uses the library inpute. Refer to the Bioconductor site for installation instructions.

To install rosaceAA start R and first install devtools by typing

install.packages("devtools")

and install rosaceAA by typing

devtools::install_github("pimentellab/rosace-aa")

Getting started

library("rosaceAA")

We recommend starting with the vignette (intro_rosaceAA.Rmd).

Further help

You may submit a bug report here on GitHub as an issue or you could send an email to roserao@ucla.edu.

Citing rosace

Please cite the following publication if you use rosaceAA: ...

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LICENSE.md

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