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Python code for flexible pipeline control
Python Perl Shell
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applications
lib/pyminc
pydpiper
testing
.gitignore
.project
.pydevproject
INSTALL
LICENSE
MANIFEST
README
setup.py
sge_batch
sge_batch_hold
smp_test
start_MAGeT.sh
status.py

README

pydpiper is a set of python modules that offers programmatic control over pipelines. 

It is very much under active development. 

Classes for building and controling the pipeline can be found in pydpiper/pipeline.py. 
The location of the pipeline directory must be in the users PYTHONPATH. 

The code for executing the pipeline can be found in pipeline_executor.py.

sge_batch is a perl script (written independently of this code) that is required to use the --queue=sge option currently written into pydpiper. It may be rewritten or moved to a separate subdirectory in the future. For now, this script should reside in a directory in the user's path. 

Application modules that utilize the pipeline class definitions are currently in applications folder. These applications may be moved to a separate repository at a later date. 
 
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