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class: CommandLineTool
cwlVersion: v1.0
$namespaces:
edam: 'http://edamontology.org/'
baseCommand: fastqc
inputs:
- id: fastq
type: File
format: edam:format_1930
inputBinding:
position: 2
doc: FastQ file from next-generation sequencers
outputs:
- id: qc
type: File
outputBinding:
glob: "*_fastqc.html"
label: fastqc
arguments:
- position: 1
prefix: -o
valueFrom: .
hints:
- class: DockerRequirement
dockerPull: 'quay.io/biocontainers/fastqc:0.11.7--pl5.22.0_2'