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Commits on Aug 12, 2010
  1. Merge branch 'master' of /home/wrk/izip/git/opensource/contrib/EMBOSS…

    …_CVSIMPORT
    
    Conflicts:
    	emboss/.cvsignore
    	emboss/Makefile.am
    committed Aug 12, 2010
Commits on Aug 11, 2010
  1. Reformatted ACD relations: lines

    jon committed Aug 11, 2010
  2. Fix for WIN32 compilation

    ajb committed Aug 11, 2010
  3. Reformatted ACD relations: lines

    jon committed Aug 11, 2010
  4. First crop of new apps

    jon committed Aug 11, 2010
  5. No need to define HAVE_CONFIG_H any more

    ajb committed Aug 11, 2010
  6. Fix for systemlibs configuration

    ajb committed Aug 11, 2010
  7. Remove autoscan stuff

    ajb committed Aug 11, 2010
  8. Attach to embossconf.h

    ajb committed Aug 11, 2010
  9. clean-local target, deletes jemboss.jar file when ant is available (f…

    …or reproducing it)
    uludag committed Aug 11, 2010
Commits on Aug 10, 2010
  1. * MySQL and PostgreSQL-specific compiler options are no longer global…

    …ly added
    
      to CFLAGS and LDFLAGS. They are now substitued into ajax/core/Makefile.am,
      since only the AJAX Core library requires SQL client libraries.
    mks committed Aug 10, 2010
  2. * Introduced a new POSTGRESQL_CPPFLAGS output variable to provide pre…

    …-processor
    
      options only.
    mks committed Aug 10, 2010
  3. * Introduced a new MYSQL_CPPFLAGS output variable to provide pre-proc…

    …essor
    
      options only.
    mks committed Aug 10, 2010
  4. * Added MYSQL_CPPFLAGS and POSTGRESQL_CPPFLAGS to AM_CPPFLAGS.

    * Added MYSQL_LDFLAGS and POSTGRESQL_LDFLAGS to libajax_la__LDFLAGS.
    mks committed Aug 10, 2010
  5. * Fixed the tarname argument in AC_INIT, which should be all upper ca…

    …se to
    
      match EMBOSS and EMBASSY release files.
    * Removed arguments to AM_INIT_AUTOMAKE, which are redundant when AC_INIT is
      called following the new syntax.
    mks committed Aug 10, 2010
  6. * Introduced a new POSTGRESQL_CPPFLAGS output variable to provide pre…

    …-processor
    
      options only.
    mks committed Aug 10, 2010
  7. * Introduced a new MYSQL_CPPFLAGS output variable to provide pre-proc…

    …essor
    
      options only.
    mks committed Aug 10, 2010
  8. * Fixed the tarname argument in AC_INIT, which should be all upper ca…

    …se to
    
      match EMBOSS and EMBASSY release files.
    * Removed arguments to AM_INIT_AUTOMAKE, which are redundant when AC_INIT is
      called following the new syntax.
    * MySQL and PostgreSQL-specific compiler options are no longer globally added
      to CFLAGS and LDFLAGS. They are now substitued into ajax/core/Makefile.am,
      since only the AJAX Core library requires SQL client libraries.
    * AJ_SAVESTATS is now defined via AC_DEFINE and therefore moved from the
      command line into the autoheader file.
    * Changed the indentation of some lines to multiples of 4 spaces for
      consistency.
    mks committed Aug 10, 2010
  9. Remove uname invocations

    ajb committed Aug 10, 2010
  10. embossconf mod

    ajb committed Aug 10, 2010
  11. Attach to embossconf.h

    ajb committed Aug 10, 2010
  12. Replace DISTFILES with noinst_HEADERS

    ajb committed Aug 10, 2010
  13. Use WORDS_BIGENDIAN from autoheader file

    ajb committed Aug 10, 2010
  14. Replace INCLUDES with AM_CPPFLAGS

    ajb committed Aug 10, 2010
  15. Don't override clean

    ajb committed Aug 10, 2010
  16. Now replaced by dbfind.acd

    jon committed Aug 10, 2010
  17. Replace INCLUDES with AM_CPPFLAGS

    ajb committed Aug 10, 2010
  18. Fix x11/png after config changes

    ajb committed Aug 10, 2010
Commits on Aug 9, 2010
  1. Remove uname invocations

    ajb committed Aug 9, 2010
  2. new config files

    uludag committed Aug 9, 2010
  3. * Added the LibraryFileName_h in comments to CPP #endif lines to indi…

    …cate the
    
      matching CPP #if statement.
    mks committed Aug 9, 2010
  4. * Added code to seqAccessEnsembl to query an identifier against all p…

    …ossible
    
      Ensembl Object types, if a species does not have a stable identifier schema
      defined in the 'meta' table. This is only applicable to AJAX Sequence Query
      objects for single entries.
    mks committed Aug 9, 2010