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  • Cambridge, UK

Popular repositories

  1. DDDNonCoding2017

    Code for paper published in March, 2017 analysing the role of de novo mutations in severe developmental disorders (part of the deciphering developmental disorders project).

    R 3 3

  2. denovoTF

    Calculating change in binding affinity for predicted TF binding sites as a result of de novo mutations in non-coding regions. Uses JASPAR database for TF binding prediction.

    R 1 1

  3. wgcna_corr

    Using Weighted Gene Coexpression Network Analysis (WGNCA) to analyze microarray data for correlations between gene modules (groups of genes with similar expression profiles) and phenotypes.

    R 1 2

  4. dddMAPS

    Mutability adjusted proportion of singletons calculation using synonymous SNPs from the DDD unaffected parents.

    R 1

  5. PCA_datascisummit

    Jupyter Notebook 1 2

  6. batch_email


42 contributions in the last year

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Contribution activity

August - September 2018

pjshort has no activity yet for this period.

July 2018

Created an issue in kipoi/models that received 8 comments

Specifying targets in DeepSEA

Hello, Thanks for all of your hard work on this! I see in the documentation here that you can specify a subset of targets (rather than the full 919…


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