The Planteome Project
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Pinned repositories
Sweetpotato Trait Ontology maintained by Crop Ontology and sweetpotatobase
Explore the Plant Trait Ontology on the Planteome site.
Repository for the Plant Experimental Conditions Ontology
Repository for the Plant Ontology
amigo
Forked from geneontology/amigoThis repo is the Planteome fork of geneontology.org AmiGO2 project. Issues in this repo should be reported only on AmiGO issues. Issues can be pushed upstream if relevant for GO.
Repository (and tracker) for a planteome.owl importer for the whole project
Repository for the Data and Visualization working group
Cassava Trait Ontology maintained by Crop Ontology and Cassavabase
crop ontology soybean traits
This is a place to keep the files which are used for the various reference ontologies.
This is a place to store folders of results, and notes on analyses performed using the Planteome ontologies. Please collect the documents in a folder with an explicit name and date (e.g. fall-2015)
Desktop Python Tk application for manual annotation of whole plant images with basic PO and TO terms.
extracts plant trait data from open data sources like apsnet and ars-grin
Repository for the Plant Disease Ontology
Examples of ontologies that can be extracted from the mappings of the COs and TO
Banana Trait Ontology maintained by Crop Ontology and Musabase
go-site-xrefs-fork
Forked from geneontology/go-siteUse this to add xrefs to metadata/db-xrefs.yaml and submit a pull request. Then they will be in the global xref file that AmiGO2 uses.
An ontology containing plant stresses; biotic and abiotic. Part of the Planteome suite of reference ontologies.
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