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spotz

A library for quantifying microbial colony growth using time series imaging

Requirements

  • Numpy/Scipy/Matplotlib-- the standard Python numerical analysis stack

  • scikit-image -- a Python library for image processing

  • peakutils -- a Python library for detecting peaks in 1D data.

  • Click - A Python library for building command-line interfaces

Usage

spotz --help will show you the available commands. Each sub-command has it's own help page as well, e.g. unscanny gridder --help will show you the help page for the gridder sub-command.

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A library for quantifying microbial colony growth using time series imaging

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