From f2e3d3da2d736b595180729ad7dbfd074aff015a Mon Sep 17 00:00:00 2001 From: "Billah, Tashrif" Date: Tue, 23 Apr 2019 16:08:12 -0400 Subject: [PATCH] correct IIT atlas link --- README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 10e7148..664c665 100644 --- a/README.md +++ b/README.md @@ -468,7 +468,7 @@ In details: * reference data is proprocessed, and registered to reference template space and then to MNI space ([IITmean_FA.nii.gz](https://www.nitrc.org/frs/download.php/6898/IITmean_FA.nii.gz)) * unprocessed target data is directly registered to MNI space * harmonized target data is registered to target template space and then to MNI space -* once the data are in MNI space, we calculate mean FA over the [IITmean_FA_skeleton.nii.gz](https://www.nitrc.org/frs/download.php/6898/IITmean_FA_skeleton.nii.gz) +* once the data are in MNI space, we calculate mean FA over the [IITmean_FA_skeleton.nii.gz](https://www.nitrc.org/frs/download.php/6897/IITmean_FA_skeleton.nii.gz) NOTE: Download the above data and place them in `IITAtlas/` directory. @@ -479,7 +479,7 @@ The numbers should like like below: BSNIP mean FA before harmonization: 0.5072286796848892 BSNIP mean FA after harmonization: 0.5321998242139347 -As we see above, BSNIP (target) mean FA over [IITmean_FA_skeleton.nii.gz](http://www.iit.edu/~mri/IITHumanBrainAtlas.html) +As we see above, BSNIP (target) mean FA over [IITmean_FA_skeleton.nii.gz](https://www.nitrc.org/frs/download.php/6897/IITmean_FA_skeleton.nii.gz) for all the site images after harmonization increased to be almost equal to that of CIDAR (reference) mean FA. Now there are two ways to debug: