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@PNNL-Comp-Mass-Spec

Computational Mass Spectrometry @ Pacific Northwest National Laboratory

Popular repositories

  1. Thermo-Raw-File-Reader Thermo-Raw-File-Reader Public

    .NET DLL wrapper for reading Thermo .Raw files. Uses ThermoFisher.CommonCore NuGet packages provided by Thermo Fisher Scientific

    C# 36 11

  2. Informed-Proteomics Informed-Proteomics Public

    Top down / bottom up, MS/MS analysis tool for DDA and DIA mass spectrometry data

    C# 29 9

  3. LIQUID LIQUID Public

    Software tool for identifying lipids in LC-MS/MS-based lipidomics data

    C# 18 2

  4. DeconTools DeconTools Public

    Used to deisotope mass spectra and to detect features from mass spectrometry data using observed isotopic signatures.

    C# 16 4

  5. MASIC MASIC Public

    MASIC generates selected ion chromatograms (SICs) for all of the parent ions chosen for fragmentation in an LC-MS/MS analysis, characterizing the peak(s) in each SIC, computing peak statistics incl…

    C# 12 4

  6. DB-Schema-Export-Tool DB-Schema-Export-Tool Public

    Exports SQL Server and Postgres database objects as schema files. Exported objects include tables, views, stored procedures, and functions, plus also database properties including database roles an…

    C# 11 7

Repositories

Showing 10 of 182 repositories
  • PRISM-Class-Library Public

    The PRISM Class Library is a collection of routines used by many of the software tools that support the Data Management System at PNNL.

    C# 2 2 0 2 Updated Jun 14, 2024
  • DBSchema_DMS Public

    PRISM Data Management System database schema

    TSQL 3 3 0 0 Updated Jun 13, 2024
  • DMS-Website Public

    DMS Website

    PHP 1 0 0 1 Updated Jun 13, 2024
  • DBSchema_PgSQL_DMS Public

    PRISM Data Management System PostgreSQL database schema

    PLpgSQL 3 0 0 0 Updated Jun 13, 2024
  • RDF-Taxonomy-Converter Public

    Processes an RDF taxonomy file and creates a tab-delimited text file with the extracted taxonomy terms

    C# 0 0 0 0 Updated Jun 9, 2024
  • PNNL-PreProcessor Public

    Distribution binaries for the PNNL PreProcessor

    1 0 0 0 Updated May 31, 2024
  • MASIC Public

    MASIC generates selected ion chromatograms (SICs) for all of the parent ions chosen for fragmentation in an LC-MS/MS analysis, characterizing the peak(s) in each SIC, computing peak statistics including elution time of the peak apex, peak area, and peak signal/noise. It can also extract reporter ion abundances (e.g. iTRAQ or TMT).

    C# 12 4 3 0 Updated May 29, 2024
  • UIMF-Library Public

    Used to create, modify and extract data from UIMF files, which are SQLite databases of mass spectrometry data acquired at Pacific Northwest National Laboratory (PNNL)

    C# 1 4 0 0 Updated May 28, 2024
  • SAIS-CSharp Public

    Suffix array, induced sorting library. Source from https://sites.google.com/site/yuta256/sais, with updated project and framework configuration

    C# 1 1 0 0 Updated May 28, 2024
  • Protein-File-Reader Public

    Class for reading Protein files, specifically .fasta files and certain tab-delimited formats

    C# 0 1 0 0 Updated May 28, 2024

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