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@PNNL-Comp-Mass-Spec

Computational Mass Spectrometry @ Pacific Northwest National Laboratory

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  1. Thermo-Raw-File-Reader Thermo-Raw-File-Reader Public

    .NET DLL wrapper for reading Thermo .Raw files. Uses ThermoFisher.CommonCore NuGet packages provided by Thermo Fisher Scientific

    C# 36 11

  2. Informed-Proteomics Informed-Proteomics Public

    Top down / bottom up, MS/MS analysis tool for DDA and DIA mass spectrometry data

    C# 29 9

  3. LIQUID LIQUID Public

    Software tool for identifying lipids in LC-MS/MS-based lipidomics data

    C# 18 2

  4. DeconTools DeconTools Public

    Used to deisotope mass spectra and to detect features from mass spectrometry data using observed isotopic signatures.

    C# 16 4

  5. MASIC MASIC Public

    MASIC generates selected ion chromatograms (SICs) for all of the parent ions chosen for fragmentation in an LC-MS/MS analysis, characterizing the peak(s) in each SIC, computing peak statistics incl…

    C# 12 4

  6. DB-Schema-Export-Tool DB-Schema-Export-Tool Public

    Exports SQL Server and Postgres database objects as schema files. Exported objects include tables, views, stored procedures, and functions, plus also database properties including database roles an…

    C# 11 7

Repositories

Showing 10 of 182 repositories
  • Protein-Digestion-Simulator Public

    Performs validation, transformation, and in-silico digestion of text files containing protein or peptide sequences (FASTA format or delimited text)

    PNNL-Comp-Mass-Spec/Protein-Digestion-Simulator’s past year of commit activity
    C# 4 BSD-2-Clause 3 0 0 Updated Jun 20, 2024
  • protein-coverage-summarizer Public

    Computes the percent of the residues in each protein sequence that have been identified, based on a list of identified peptides. A graphical user interface (GUI) is provided to allow the user to select the input files, set the options, and browse the coverage results.

    PNNL-Comp-Mass-Spec/protein-coverage-summarizer’s past year of commit activity
    C# 6 BSD-2-Clause 3 0 0 Updated Jun 20, 2024
  • Status-Message-DB-Updater Public

    Reads manager status messages from an ActiveMQ server and push them into the DMS database.

    PNNL-Comp-Mass-Spec/Status-Message-DB-Updater’s past year of commit activity
    C# 0 0 0 0 Updated Jun 20, 2024
  • DMS-Instrument-Directory-Scanner Public

    Instrument directory scanner

    PNNL-Comp-Mass-Spec/DMS-Instrument-Directory-Scanner’s past year of commit activity
    C# 0 0 0 0 Updated Jun 20, 2024
  • Package_Folder_Create_Manager Public

    Creates a new storage folder for newly created data packages

    PNNL-Comp-Mass-Spec/Package_Folder_Create_Manager’s past year of commit activity
    C# 0 0 0 0 Updated Jun 20, 2024
  • MyEMSL-MTS-File-Cache-Manager Public

    MTS manager for retrieving files from MyEMSL

    PNNL-Comp-Mass-Spec/MyEMSL-MTS-File-Cache-Manager’s past year of commit activity
    C# 2 0 0 0 Updated Jun 20, 2024
  • DMS-Space-Manager Public

    DMS Space Manager

    PNNL-Comp-Mass-Spec/DMS-Space-Manager’s past year of commit activity
    C# 0 0 0 0 Updated Jun 20, 2024
  • DMS-EMail-Manager Public

    DMS EMail Manager

    PNNL-Comp-Mass-Spec/DMS-EMail-Manager’s past year of commit activity
    C# 0 0 0 0 Updated Jun 20, 2024
  • Data-Import-Manager Public

    DataImportManager (DIM)

    PNNL-Comp-Mass-Spec/Data-Import-Manager’s past year of commit activity
    C# 0 0 0 0 Updated Jun 20, 2024
  • DMS-Website Public

    DMS Website

    PNNL-Comp-Mass-Spec/DMS-Website’s past year of commit activity
    PHP 1 0 0 1 Updated Jun 20, 2024