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utils
1.1_merge_peakfiles.sh
1.2_extract_nidag_text.py
10_mk_8fold_cogatlas_mallet_data.py
11_mk_8fold_disorders_mallet_data.py
12_mk_8fold_cogatlas_topic_models.py
13.1_run_all_nfold_scripts.sh
13.2_run_all_disorder_nfold_scripts.sh
13_mk_8fold_disorders_topic_models.py
14_get_best_topic_likelihood.py
15.1_get_disorders_dimensionality.py
15.2_run_all_disorders_models.sh
15.3_get_best_disorder_dimensionality.py
15_run_topic_models.py
16_mk_cogatlas_loadingdata.py
17_mk_disorders_loadingdata.py
18.1.1_mk_disorder29_maps.sh
18.1.1_run_all_disorder_chisq.sh
18.1_mk_all_chisq_maps.sh
18.2_mk_6mm_chisq_maps.sh
18_mk_all_chisq_maps.py
19_mk_slice_images_cogatlas.py
1_db_foci_to_image.py
20_mk_slice_images_disorders.py
22_mk_latexreport_cogatlas.py
23_mk_latexreport_disorders.py
24_run_CCA_nonneg.py
25_cluster_disorders.R
26_make_cognitive_topic_figure.py
27_make_disorders_topic_figure.py
28.1_mk_8fold_fulltext_mallet_data.py
28.3_get_best_dimensionality.py
28_mk_8fold_fulltext_topic_models.py
29.1_make_annotation_reports.py
29_annotate_data_wholebrain.py
2_get_cogat_concepts.py
30_get_wordhist.py
31_count_locations.py
32_doc_topic_hist.py
33_plot_likelihood.py
34_run_CCA_on_topics.py
35_mk_fold1_loadingdata.py
36.1_mk_slice_corr_images.disorders.py
36_mk_slice_corr_images.cogatlas.py
37_make_cognitive_topic_corr_figure.py
38_make_disorder_topic_corr_figure.py
39_get_topic_hierarchy.py
3_create_disorder_list.py
4_get_disorders_NIF.py
5_mk_cogatlas_docs.py
6_mk_disorders_docs.py
7_mk_pickled_data.py
8.1_mk_cogatlas_8fold_data.sh
8_mk_8fold_cogatlas.py
9.1_mk_8fold_disorders_data.sh
9_mk_8fold_disorders.py
run_mallet_cogatlas_130.sh
run_mallet_stub.sh