PomBase code for accessing Chado
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MANIFEST
README.md
Vagrantfile
check-db.yaml
load-config-example.yaml
load-pombase-chado.yaml

README.md

PomBase Chado code

Installation

sudo apt-get install libmodule-install-perl
perl Build.PL
./Build
./Build installdeps
./Build test
./Build install

Scripts

The following scripts are provided in the script directory:

  • pombase-import.pl - import files in various formats
  • pombase-export.pl - export flat files
  • pombase-chado.pl - process data in Chado

Run these scripts with the "-h" argument for more documentation.

License and Copyright

Copyright (C) 2011-2013 PomBase

This program is free software; you can redistribute it and/or modify it under the terms of either: the GNU General Public License as published by the Free Software Foundation; or the Artistic License.

See http://dev.perl.org/licenses/ for more information.