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include CHANGES.rst
include INSTALL.rst
include LICENSE.rst
include README.rst
include setup.py
include prody/__init__.py
include prody/future.py
include prody/tools.py
include prody/atomic/__init__.py
include prody/atomic/atom.py
include prody/atomic/atomgroup.py
include prody/atomic/atomic.py
include prody/atomic/atommap.py
include prody/atomic/bond.py
include prody/atomic/chain.py
include prody/atomic/fields.py
include prody/atomic/functions.py
include prody/atomic/hierview.py
include prody/atomic/pointer.py
include prody/atomic/pyparsing.py
include prody/atomic/residue.py
include prody/atomic/segment.py
include prody/atomic/select.py
include prody/atomic/selection.py
include prody/atomic/subset.py
include prody/dynamics/__init__.py
include prody/dynamics/analysis.py
include prody/dynamics/anm.py
include prody/dynamics/compare.py
include prody/dynamics/editing.py
include prody/dynamics/functions.py
include prody/dynamics/gamma.py
include prody/dynamics/gnm.py
include prody/dynamics/mode.py
include prody/dynamics/modeset.py
include prody/dynamics/nma.py
include prody/dynamics/pca.py
include prody/dynamics/plotting.py
include prody/dynamics/sampling.py
include prody/ensemble/__init__.py
include prody/ensemble/conformation.py
include prody/ensemble/ensemble.py
include prody/ensemble/functions.py
include prody/ensemble/pdbensemble.py
include prody/kdtree/KDTree.c
include prody/kdtree/KDTree.h
include prody/kdtree/KDTreemodule.c
include prody/kdtree/Neighbor.h
include prody/kdtree/__init__.py
include prody/kdtree/kdtree.py
include prody/measure/__init__.py
include prody/measure/contacts.py
include prody/measure/measure.py
include prody/measure/transform.py
include prody/proteins/__init__.py
include prody/proteins/blastpdb.py
include prody/proteins/compare.py
include prody/proteins/cpairwise2.c
include prody/proteins/dssp.py
include prody/proteins/functions.py
include prody/proteins/header.py
include prody/proteins/localpdb.py
include prody/proteins/pairwise2.py
include prody/proteins/pdbclusters.py
include prody/proteins/pdbfile.py
include prody/proteins/pdbligands.py
include prody/proteins/stride.py
include prody/proteins/wwpdbftp.py
include prody/routines/__init__.py
include prody/routines/actions.py
include prody/routines/argparse.py
include prody/routines/nmaoptions.py
include prody/routines/prody_align.py
include prody/routines/prody_anm.py
include prody/routines/prody_biomol.py
include prody/routines/prody_blast.py
include prody/routines/prody_catdcd.py
include prody/routines/prody_contacts.py
include prody/routines/prody_eda.py
include prody/routines/prody_fetch.py
include prody/routines/prody_gnm.py
include prody/routines/prody_pca.py
include prody/routines/prody_select.py
include prody/tests/__init__.py
include prody/tests/test_datafiles.py
include prody/tests/test_ensemble.py
include prody/tests/data/anm1ubi_evalues.dat
include prody/tests/data/anm1ubi_hessian.coo
include prody/tests/data/anm1ubi_vectors.dat
include prody/tests/data/dcd2k39_truncated.dcd
include prody/tests/data/gnm1ubi_evalues.dat
include prody/tests/data/gnm1ubi_kirchhoff.coo
include prody/tests/data/gnm1ubi_vectors.dat
include prody/tests/data/pdb1ejg_oneatom.pdb
include prody/tests/data/pdb1ejg.pdb
include prody/tests/data/pdb1r19_dssp.pdb
include prody/tests/data/pdb1ubi_ca.pdb
include prody/tests/data/pdb1ubi.pdb
include prody/tests/data/pdb2k39_truncated.pdb
include prody/tests/data/pdb3mht.pdb
include prody/tests/test_atomic/__init__.py
include prody/tests/test_atomic/test_atomic.py
include prody/tests/test_atomic/test_select.py
include prody/tests/test_dynamics/__init__.py
include prody/tests/test_dynamics/test_editing.py
include prody/tests/test_dynamics/test_enms.py
include prody/tests/test_kdtree/__init__.py
include prody/tests/test_kdtree/test_kdtree.py
include prody/tests/test_measure/__init__.py
include prody/tests/test_measure/test_contacts.py
include prody/tests/test_measure/test_measure.py
include prody/tests/test_measure/test_transform.py
include prody/tests/test_proteins/__init__.py
include prody/tests/test_proteins/test_pairwise2.py
include prody/tests/test_proteins/test_proteins.py
include prody/tests/test_utilities/__init__.py
include prody/tests/test_utilities/test_checkers.py
include prody/tests/test_utilities/test_misctools.py
include prody/trajectory/__init__.py
include prody/trajectory/dcdfile.py
include prody/trajectory/frame.py
include prody/trajectory/psffile.py
include prody/trajectory/trajbase.py
include prody/trajectory/trajectory.py
include prody/trajectory/trajfile.py
include prody/utilities/__init__.py
include prody/utilities/checkers.py
include prody/utilities/logger.py
include prody/utilities/misctools.py
include prody/utilities/pathtools.py
include prody/utilities/settings.py
include scripts/prody
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