R library to address the Progenetix API
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README.md
pgDataLoader.R

README.md

pgRpi

R library (libraries?) to address the Progenetix API

  • pgDataLoader.R

This library is used to load a data table or status matrix of selected Progenetix/arraymap samples into an R object. An example would be

amtab <- pgDataLoader(icdm=c("9500", "947"), db="arraymap", genes_m=c("MYCN", "TP53$"))

It basically constructs a URL and executes this as the target of a read.table() function. Feel free to use the returned URL as template to create your own calls, based on the API documentation in the Progenetix Wiki.