SWRLAPIPublications

Martin O'Connor edited this page Nov 23, 2017 · 4 revisions

To cite general use of the SWRLAPI in a publication, use one of the following papers:

  • "The SWRLAPI: A Development Environment for Working with SWRL Rules" M.J. O'Connor, R.D. Shankar, C. Nyulas, A.K. Das, M.A. Musen. OWL: Experiences and Directions (OWLED), 4th International Workshop, Washington, D.C., U.S.A, 2008.
  • "Supporting Rule System Interoperability on the Semantic Web with SWRL" M.J. O'Connor, H. Knublauch, S.W. Tu, B. Grossof, M. Dean, W.E. Grosso, M.A. Musen. 4th International Semantic Web Conference (ISWC), Galway, Ireland, Springer Verlag, LNCS 3729, 974-986, 2005.

SQWRL can be cited as follows:

The SWRLAPI's temporal functionality is covered in the following papers:

  • "A Method for Representing and Querying Temporal Information in OWL" M. J. O'Connor and A. K. Das. Biomedical Engineering Systems and Technologies (Selected Papers), Springer Verlag, CCIS 127, 97-110, 2011.
  • "A Lightweight Model for Representing and Reasoning with Temporal Information in Biomedical Ontologies" M. J. O'Connor and A. K. Das. Proceedings of the Third International Conference on Health Informatics (HEALTHINF), Valencia, Spain, January 20-23, 2010.

The OWL 2 RL reasoner used by the SWRLAPI is described here:

Papers describing use of specific SWRLAPI components may find a more targeted publication to cite in the publication list below.

  • "Clustering Rule Bases using Ontology-based Similarity Measures" S. Hassanpour, M. J. O'Connor, A. K. Das. Journal of Web Semantics, 25:1-8, 2014.
  • "A Semantic-Based Method for Extracting Concept Definitions from Scientific Publications: Evaluation in the Autism Phenotype Domain." S. Hassanpour, M. J. O'Connor, A. K. Das. Journal of Biomedical Semantics, 4:(14), 2013.
  • "A Pair of OWL 2 RL Reasoners" M. J. O'Connor, A.K. Das. OWL: Experiences and Directions (OWLED), 9th International Workshop, Heraklion, Greece, 2012. This paper describes the implementation of the OWL 2 RL reasoner used by the SWRLAPI.
  • "Adaptive System for Collaborative Online Laboratories" C. Gravier, M. J. O'Connor, J. Fayolle, J. Lardon. IEEE Intelligent Systems, 27(4), 2012. This work describes the use of SWRL to specify and execute a variety of collaborative strategies in online laboratories.
  • "SWRL Rule Editor - A Web Application as Rich as Desktop Business Rule Editors" J. P. Orlando, A. Rivolli, S. Hassanpour, M.J. O'Connor, A.K. Das, D.A. Moreira. 4th International Conference on Enterprise Information Systems Wroclaw, Poland, 258-263, 2012. This paper describes a web-based implementation of the SWRLTab.
  • "Evaluation of Semantic-Based Information Retrieval Methods in the Autism Phenotype Domain" S. Hassanpour, M. J. O'Connor, A. K. Das. AMIA Annual Symposium, Washington, D.C., U.S.A., 2011. This paper shows that incorporating SWRL rules can improved ontology-based information retrieval methods.
  • " Web-Based Querying and Temporal Visualization of Longitudinal Clinical Data" A. Richards, M. J. O'Connor, S. B. Martins, M. Bingen, S. W. Tu, A. K. Das. 13th Conference on Artificial Intelligence in Medicine (AIME), Bled, Solvenia, 2011. This paper describes the SWEETInfo temporal data management system, which uses SWRL and SQWRL for data processing.
  • "A Rule-Based Method for Specifying and Querying Temporal Abstractions". M. J. O'Connor, G. Hernandez, Jr., A. K. Das. 13th Conference on Artificial Intelligence in Medicine (AIME), Bled, Solvenia, 2011. This paper describes outlines the implementation of a temporal abstraction mechanism in the SQWRL query language.
  • "A Framework for the Automatic Extraction of Rules from Online Text" S. Hassanpour, M. J. O'Connor, A. K. Das. International RuleML Symposium on Rule Interchange and Applications, Barcelona, Spain, 2011. This work describes a framework for automatically extracting SWRL rules from online text.
  • "Web-Based Exploration of Temporal Data in Biomedicine" M. J. O'Connor, M. Bingen, A. Richards, S. B. Martins, S. W. Tu, A. K. Das. 7th International Conference on Web Information Systems and Technologies (WEBIST), Noordwijkerhout, Netherlands, 352-359, 2011. This paper discusses the use of SWRL and SQWRL in the development of a web-based application for performing temporal data analysis.
  • "A Method for Representing and Querying Temporal Information in OWL" M. J. O'Connor and A. K. Das. Biomedical Engineering Systems and Technologies (Selected Papers), Springer Verlag, CCIS 127, 97-110, 2011. This paper is an extended version of the HEALTHINF paper with more details on the writing of temporal rules and queries.
  • "Visualizing Logical Dependencies in SWRL Rule Bases" S. Hassanpour, M. J. O'Connor, A. K. Das. International RuleML Symposium on Rule Interchange and Applications, Washington, DC, Springer Verlag, 6403, 259-272, 2010. Nominated for Best Paper award. This work involves automatically detecting high-level patterns in SWRL rule bases, which can then be used for rule base analysis and comprehension.
  • "A Lightweight Model for Representing and Reasoning with Temporal Information in Biomedical Ontologies" M. J. O'Connor and A. K. Das. International Conference on Health Informatics (HEALTHINF), Valencia, Spain, 2010. Winner of Best Paper award. This paper describes the representation of a temporal information in OWL and shows how SWRL and SQWRL can then be used to reason with and query this information.
  • "A Software Tool for Visualizing, Managing and Eliciting SWRL Rules" S. Hassanpour, M. J. O'Connor, A. K. Das. Extended Semantic Web Conference (ESWC), Heraklion, Greece, Springer Verlag, LNCS 6089, 381–385, 2010. Winner of Best Demo award. This demo presents the Axiome rule management Protege-OWL plugin.
  • "Semantic Reasoning with XML-based Biomedical Information Models" M. J. O'Connor and A. K. Das. 13th World Congress on Medical Informatics (MedInfo), Cape Town, South Africa, 985-990, 2010. This paper outlines the use of SWRL in the development of reasoning methods to work with information models describing data in the HIV and radiological image domains.
  • "SQWRL: a Query Language for OWL" M. J. O'Connor and A. K. Das. OWL: Experiences and Directions (OWLED), 6th International Workshop, Chantilly, VA, 2009. This paper gives a basic introduction to SQWRL's collection-based features.
  • "A Rule Management and Elicitation Tool for SWRL Rule Bases" S. Hassanpour, M. J. O'Connor, A. K. Das. OWL: Experiences and Directions (OWLED), 6th International Workshop, Chantilly, VA, 2009. This paper describes the Axiome rule management Protege-OWL plugin.
  • "Exploration of SWRL Rule Bases through Visualization, Paraphrasing, and Categorization of Rules" S. Hassanpour, M. J. O'Connor, A. K. Das. International RuleML Symposium on Rule Interchange and Applications, Las Vegas, NV, 5858, 246-261, 2009. Winner of Best Paper award. This work describes a set of techniques for visualizing and exploring SWRL rule bases.
  • "Using the Semantic Web Rule Language in the Development of Ontology-Driven Applications" M. J. O'Connor, M. A. Musen, A. K. Das. Handbook of Research on Emerging Rule-Based Languages and Technologies: Open Solutions and Approaches, Chapter XXII, IGI Global, Hershey, Pennsylvania, 2009. This book chapter gives on overview of SWRL and describes its use in the development of Semantic Web applications.
  • "Semantic Reasoning with Image Annotations for Tumor Assessment" M. Levy, M. J. O'Connor, D. L. Rubin. AMIA Annual Symposium, San Francisco, CA, U.S.A., 359-363, 2009. This paper describes the use of SWRL to reason with image annotations for tumor assessment in breast cancer.
  • "The SWRLAPI: A Development Environment for Working with SWRL Rules" M. J. O'Connor, C. I. Nyulas, R. D. Shankar, A. K. Das, M. A. Musen. OWL: Experiences and Directions (OWLED), 5th International Workshop, Karlsruhe, Germany, 2008. This paper gives a basic overview of the features offered by the SWRLTab.
  • "Developing a Web-Based Application using OWL and SWRL" M. J. O'Connor, R. D. Shankar, S. W. Tu, C. I. Nyulas, A. K. Das. AAAI Spring Symposium, Stanford, CA, 2008. This paper describes the use of SWRL in the development of a simple web application.
  • "Using an Integrated Ontology and Information Model for Querying and Reasoning about Phenotypes: The Case of Autism" S. W. Tu, J. Tenenbaum, M. J. O'Connor, R. D. Shankar, A. K. Das. AMIA Annual Symposium, Washington, DC, U.S.A., 727-731, 2008. This paper describes the use of SWRL to reason with autism phenotypes.
  • "Querying the Semantic Web with SWRL" M. J. O'Connor and A. K. Das. International RuleML Symposium on Rule Interchange and Applications, Orlando, FL, Springer Verlag, LNCS 4824, 155-159, 2007. Winner of RuleML Challenge. This demo illustrates the use of SWRL to tackle the challenge of data integration.
  • "Efficiently Querying Relational Databases using OWL and SWRL" M. J. O'Connor, R. D. Shankar, S. W. Tu, C. I. Nyulas, A. K. Das, M. A. Musen. 1st International Conference on Web Reasoning and Rule Systems (RR), Innsbruck, Austria, Springer Verlag, LNCS 4524, 361-363, 2007. This poster described the use of SWRL to access relational data in OWL-based applications.
  • "Using Semantic Web Technologies for Knowledge-Driven Querying of Biomedical Data" M. J. O'Connor, R. D. Shankar, S. W. Tu, C. I. Nyulas, D. B. Parrish, A. K. Das, M. A. Musen. 11th Conference on Artificial Intelligence in Medicine (AIME), Amsterdam, Netherlands, Springer Verlag, LNAI 4594, 267-276, 2007.
  • "Supporting Rule System Interoperability on the Semantic Web with SWRL" M.J. O'Connor, H. Knublauch, S.W. Tu, B. Grossof, M. Dean, W.E. Grosso, M.A. Musen. 4th International Semantic Web Conference (ISWC), Galway, Ireland, Springer Verlag, LNCS 3729, 974-986, 2005.
  • "Writing Rules for the Semantic Web Using SWRL and Jess" M.J. O'Connor, H. Knublauch, S.W. Tu, M.A. Musen. Protégé with Rules Workshop, held with 8th International Protégé Conference, Madrid, Spain, 2005.