{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":163188061,"defaultBranch":"master","name":"timemachine","ownerLogin":"proteneer","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2018-12-26T14:25:45.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/2280724?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1719597200.0","currentOid":""},"activityList":{"items":[{"before":"5d7ef44385e2bd41a5adddd61747bd8d12e1f7a3","after":"cfde3aed3604ce4c437c5538cdb4095becade795","ref":"refs/heads/task/add-message-about-atoms-moved","pushedAt":"2024-06-28T20:08:58.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"badisa","name":"Forrest York","path":"/badisa","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5840832?s=80&v=4"},"commit":{"message":"PR Feedback: Convert max distance to Angstroms","shortMessageHtmlLink":"PR Feedback: Convert max distance to Angstroms"}},{"before":null,"after":"5d7ef44385e2bd41a5adddd61747bd8d12e1f7a3","ref":"refs/heads/task/add-message-about-atoms-moved","pushedAt":"2024-06-28T17:53:20.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"badisa","name":"Forrest York","path":"/badisa","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5840832?s=80&v=4"},"commit":{"message":"Improves error message of moving atoms too far\n\n* Minor performance improvements, only look at protein/ligand (1/3 of\nthe atoms in some systems, though don't think this makes much if any\ndifference)\n* Clean up some type hints\n* Clean up docstrings\n* Adds a test for the failure","shortMessageHtmlLink":"Improves error message of moving atoms too far"}},{"before":"2abb1c01902348a61cde701e58474876c1fae9e6","after":"b230ca772d9d66dd6799e37b8cce3d1754e9b7ce","ref":"refs/heads/master","pushedAt":"2024-06-28T17:17:48.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"jkausrelay","name":null,"path":"/jkausrelay","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/101571135?s=80&v=4"},"commit":{"message":"update to 1.20.3-1ubuntu2.1 (#1335)\n\n* update to 1.20.3-1ubuntu2.1\r\n\r\n* Update Dockerfile\r\n\r\nCo-authored-by: Forrest York \r\n\r\n---------\r\n\r\nCo-authored-by: Forrest York ","shortMessageHtmlLink":"update to 1.20.3-1ubuntu2.1 (#1335)"}},{"before":"c2e52f6a61cc71d31b3fbc9dbd7625134e56ed4b","after":"9ef3c2a10bc81510bfe8898be49aa303f9a9aed6","ref":"refs/heads/update_wget_version","pushedAt":"2024-06-26T18:01:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jkausrelay","name":null,"path":"/jkausrelay","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/101571135?s=80&v=4"},"commit":{"message":"Update Dockerfile\n\nCo-authored-by: Forrest York ","shortMessageHtmlLink":"Update Dockerfile"}},{"before":null,"after":"c2e52f6a61cc71d31b3fbc9dbd7625134e56ed4b","ref":"refs/heads/update_wget_version","pushedAt":"2024-06-26T17:56:31.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"jkausrelay","name":null,"path":"/jkausrelay","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/101571135?s=80&v=4"},"commit":{"message":"update to 1.20.3-1ubuntu2.1","shortMessageHtmlLink":"update to 1.20.3-1ubuntu2.1"}},{"before":"dc6a0f1e05a5b0b830e08b2fedba7e5097d6dd02","after":null,"ref":"refs/heads/task/avoid-writing-to-disk-then-reading-to-memory","pushedAt":"2024-06-25T14:12:44.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"badisa","name":"Forrest York","path":"/badisa","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5840832?s=80&v=4"}},{"before":"624330563c25f03b585c2f322834c19f0453360f","after":"2abb1c01902348a61cde701e58474876c1fae9e6","ref":"refs/heads/master","pushedAt":"2024-06-25T14:12:41.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"badisa","name":"Forrest York","path":"/badisa","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5840832?s=80&v=4"},"commit":{"message":"Add method to get samples from context without storing to disk (#1334)\n\n* Adds sample_with_context_iter to get frames in memory\r\n\r\n* Allows more fine grained control of when data is in memory or on disk\r\n\r\n* Avoid reading chunks into memory for storage\r\n\r\n---------\r\n\r\nCo-authored-by: Matt Wittmann ","shortMessageHtmlLink":"Add method to get samples from context without storing to disk (#1334)"}},{"before":"bc0a35f58b2968c343c455bc0515f3b6720a106e","after":"dc6a0f1e05a5b0b830e08b2fedba7e5097d6dd02","ref":"refs/heads/task/avoid-writing-to-disk-then-reading-to-memory","pushedAt":"2024-06-24T19:19:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"badisa","name":"Forrest York","path":"/badisa","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5840832?s=80&v=4"},"commit":{"message":"PR Feedback: Fix linting","shortMessageHtmlLink":"PR Feedback: Fix linting"}},{"before":"81d31ec7ed4f5bccd4bcb6fd9923020dc6c63ff7","after":"bc0a35f58b2968c343c455bc0515f3b6720a106e","ref":"refs/heads/task/avoid-writing-to-disk-then-reading-to-memory","pushedAt":"2024-06-24T19:05:12.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"badisa","name":"Forrest York","path":"/badisa","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5840832?s=80&v=4"},"commit":{"message":"PR Feedback: Return last object, just being defensive","shortMessageHtmlLink":"PR Feedback: Return last object, just being defensive"}},{"before":"f359991bb437c04636ae00d82dbad458860be13f","after":"81d31ec7ed4f5bccd4bcb6fd9923020dc6c63ff7","ref":"refs/heads/task/avoid-writing-to-disk-then-reading-to-memory","pushedAt":"2024-06-24T18:38:55.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"badisa","name":"Forrest York","path":"/badisa","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5840832?s=80&v=4"},"commit":{"message":"PR Feedback: Add parameter name for readability\n\nCo-authored-by: Matt Wittmann ","shortMessageHtmlLink":"PR Feedback: Add parameter name for readability"}},{"before":"009593200e767bbef75626ffe2ea02ee7132ebf7","after":"f359991bb437c04636ae00d82dbad458860be13f","ref":"refs/heads/task/avoid-writing-to-disk-then-reading-to-memory","pushedAt":"2024-06-24T18:23:28.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"badisa","name":"Forrest York","path":"/badisa","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5840832?s=80&v=4"},"commit":{"message":"PR Feedback: Prefer indexing to squeeze","shortMessageHtmlLink":"PR Feedback: Prefer indexing to squeeze"}},{"before":"347ddc327a2ffd80913a34db10b8fca2332bd83b","after":"009593200e767bbef75626ffe2ea02ee7132ebf7","ref":"refs/heads/task/avoid-writing-to-disk-then-reading-to-memory","pushedAt":"2024-06-24T15:33:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"badisa","name":"Forrest York","path":"/badisa","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5840832?s=80&v=4"},"commit":{"message":"PR Feedback: Fix up grammar","shortMessageHtmlLink":"PR Feedback: Fix up grammar"}},{"before":"1e9df645766e4d740b1b6bd37b808ad11dc03118","after":"347ddc327a2ffd80913a34db10b8fca2332bd83b","ref":"refs/heads/task/avoid-writing-to-disk-then-reading-to-memory","pushedAt":"2024-06-24T15:32:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"badisa","name":"Forrest York","path":"/badisa","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5840832?s=80&v=4"},"commit":{"message":"PR Feedback: Fix up docstring","shortMessageHtmlLink":"PR Feedback: Fix up docstring"}},{"before":"fa0eabed33b931aabfa01331b64dbd29ef5b472a","after":"1e9df645766e4d740b1b6bd37b808ad11dc03118","ref":"refs/heads/task/avoid-writing-to-disk-then-reading-to-memory","pushedAt":"2024-06-21T18:58:22.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"badisa","name":"Forrest York","path":"/badisa","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5840832?s=80&v=4"},"commit":{"message":"Merge branch 'master' into task/avoid-writing-to-disk-then-reading-to-memory","shortMessageHtmlLink":"Merge branch 'master' into task/avoid-writing-to-disk-then-reading-to…"}},{"before":"45fbf661e5cbce7eda2d5b9f930a2d134ce436b7","after":null,"ref":"refs/heads/task/remove-openmm-import-from-top-level","pushedAt":"2024-06-21T17:09:36.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"badisa","name":"Forrest York","path":"/badisa","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5840832?s=80&v=4"}},{"before":"02d5366ffdeb7ee3f5c49e4f69e5dc10b7942c3a","after":"624330563c25f03b585c2f322834c19f0453360f","ref":"refs/heads/master","pushedAt":"2024-06-21T17:09:34.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"badisa","name":"Forrest York","path":"/badisa","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5840832?s=80&v=4"},"commit":{"message":"Moves OpenMM imports to function calls (#1333)","shortMessageHtmlLink":"Moves OpenMM imports to function calls (#1333)"}},{"before":"93818a6827fe887a691bc863a21e05c721ecb48c","after":"fa0eabed33b931aabfa01331b64dbd29ef5b472a","ref":"refs/heads/task/avoid-writing-to-disk-then-reading-to-memory","pushedAt":"2024-06-21T17:01:40.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"badisa","name":"Forrest York","path":"/badisa","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5840832?s=80&v=4"},"commit":{"message":"Avoid reading chunks into memory for storage","shortMessageHtmlLink":"Avoid reading chunks into memory for storage"}},{"before":"1b75a5991b48cac448e9a0ef194f7fdfd9cf4e9e","after":null,"ref":"refs/heads/wip-stricter-chiral-filter-in-mcs","pushedAt":"2024-06-21T16:28:49.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"maxentile","name":"Josh Fass","path":"/maxentile","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5759036?s=80&v=4"}},{"before":"eb96c058dc299acea8eb4659b9c34c2d59b0642a","after":"45fbf661e5cbce7eda2d5b9f930a2d134ce436b7","ref":"refs/heads/task/remove-openmm-import-from-top-level","pushedAt":"2024-06-21T13:42:19.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"badisa","name":"Forrest York","path":"/badisa","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5840832?s=80&v=4"},"commit":{"message":"Moves OpenMM imports to function calls","shortMessageHtmlLink":"Moves OpenMM imports to function calls"}},{"before":"997a18ba66e51d9ed6552220de7789111c9d4108","after":"1b75a5991b48cac448e9a0ef194f7fdfd9cf4e9e","ref":"refs/heads/wip-stricter-chiral-filter-in-mcs","pushedAt":"2024-06-21T01:35:42.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"maxentile","name":"Josh Fass","path":"/maxentile","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5759036?s=80&v=4"},"commit":{"message":"Merge branch 'wip-stricter-chiral-filter-in-mcs' of https://github.com/proteneer/timemachine into wip-stricter-chiral-filter-in-mcs","shortMessageHtmlLink":"Merge branch 'wip-stricter-chiral-filter-in-mcs' of https://github.co…"}},{"before":"f1f8a2f58ec2672aed3c60f846f6ee3ac39137df","after":"997a18ba66e51d9ed6552220de7789111c9d4108","ref":"refs/heads/wip-stricter-chiral-filter-in-mcs","pushedAt":"2024-06-21T01:15:40.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"maxentile","name":"Josh Fass","path":"/maxentile","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5759036?s=80&v=4"},"commit":{"message":"Merge branch 'master' into wip-stricter-chiral-filter-in-mcs","shortMessageHtmlLink":"Merge branch 'master' into wip-stricter-chiral-filter-in-mcs"}},{"before":"c1c18b54a6cec8035b67fc27d26c59f243dc6169","after":"f1f8a2f58ec2672aed3c60f846f6ee3ac39137df","ref":"refs/heads/wip-stricter-chiral-filter-in-mcs","pushedAt":"2024-06-21T00:55:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"maxentile","name":"Josh Fass","path":"/maxentile","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5759036?s=80&v=4"},"commit":{"message":"Modify failing tests","shortMessageHtmlLink":"Modify failing tests"}},{"before":"7271d72cd396d50b04279883c0f7c118f0b721d9","after":null,"ref":"refs/heads/bugfix/non-determinism-in-hrex-with-local-md","pushedAt":"2024-06-20T23:51:27.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"badisa","name":"Forrest York","path":"/badisa","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5840832?s=80&v=4"}},{"before":"8240243c77891bef73021dde90e9d2038d1e1a17","after":"02d5366ffdeb7ee3f5c49e4f69e5dc10b7942c3a","ref":"refs/heads/master","pushedAt":"2024-06-20T23:51:24.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"badisa","name":"Forrest York","path":"/badisa","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5840832?s=80&v=4"},"commit":{"message":"Fixes Local MD HREX determinism (#1331)\n\n* Add failing test for HREX determinism with local MD\r\n\r\n* Only impacts local md\r\n\r\n* Avoid using global numpy random for seed","shortMessageHtmlLink":"Fixes Local MD HREX determinism (#1331)"}},{"before":"64b8210d1351f7d468262b337684738a381504d4","after":"c1c18b54a6cec8035b67fc27d26c59f243dc6169","ref":"refs/heads/wip-stricter-chiral-filter-in-mcs","pushedAt":"2024-06-20T23:19:58.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"maxentile","name":"Josh Fass","path":"/maxentile","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5759036?s=80&v=4"},"commit":{"message":"Merge branch 'master' into wip-stricter-chiral-filter-in-mcs","shortMessageHtmlLink":"Merge branch 'master' into wip-stricter-chiral-filter-in-mcs"}},{"before":"269f2872a98ff370c1d85286a7f1bd9a2deff4f3","after":"64b8210d1351f7d468262b337684738a381504d4","ref":"refs/heads/wip-stricter-chiral-filter-in-mcs","pushedAt":"2024-06-20T22:49:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"maxentile","name":"Josh Fass","path":"/maxentile","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5759036?s=80&v=4"},"commit":{"message":"Modify test of default kwargs for empty result\n\nAlso, increase # of random instances tested, and assert fraction of successful calls to `get_cores(a, b)` on random pairs of hif2a ligands >= 50%","shortMessageHtmlLink":"Modify test of default kwargs for empty result"}},{"before":"0bf70b908c506918733af473a6a55a5dbeeacda4","after":"269f2872a98ff370c1d85286a7f1bd9a2deff4f3","ref":"refs/heads/wip-stricter-chiral-filter-in-mcs","pushedAt":"2024-06-20T22:20:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"maxentile","name":"Josh Fass","path":"/maxentile","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5759036?s=80&v=4"},"commit":{"message":"Modify failing tests","shortMessageHtmlLink":"Modify failing tests"}},{"before":"57c6aa7815b7dce206728ec60fa405f99aa31dfe","after":"7271d72cd396d50b04279883c0f7c118f0b721d9","ref":"refs/heads/bugfix/non-determinism-in-hrex-with-local-md","pushedAt":"2024-06-20T22:13:21.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"badisa","name":"Forrest York","path":"/badisa","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5840832?s=80&v=4"},"commit":{"message":"Avoid using global numpy random for seed","shortMessageHtmlLink":"Avoid using global numpy random for seed"}},{"before":"e29ee15c0d0c76d07827835e511c3ae543b476cb","after":"0bf70b908c506918733af473a6a55a5dbeeacda4","ref":"refs/heads/wip-stricter-chiral-filter-in-mcs","pushedAt":"2024-06-20T22:11:55.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"maxentile","name":"Josh Fass","path":"/maxentile","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5759036?s=80&v=4"},"commit":{"message":"Modify failing tests","shortMessageHtmlLink":"Modify failing tests"}},{"before":"ebd1a0ea2fd9abdfd202f3906501ee4ecfe8e938","after":null,"ref":"refs/heads/log-wall-time-per-frame","pushedAt":"2024-06-20T22:08:20.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"mcwitt","name":"Matt Wittmann","path":"/mcwitt","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/319411?s=80&v=4"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEcjGX6QA","startCursor":null,"endCursor":null}},"title":"Activity · proteneer/timemachine"}