The bioc graph class, an experiment for github
The essential tasks are to develop simple constructors
graphAM(), to be used in place of
new("graphNEL", <...>) or
new("graphAM", <...>) for creating graphNEL or graphAM instances.
There are new unit tests that currently fail;
graphAM() should be implemented so these, and other existing and
reasonable tests, pass.
In addition, existing tests use new("graphNEL", ...), etc; these should be updated to use the new constructors, and should pass without further change.
graphAM() constructors should be documented, on
the graphNEL-class and graphAM-class man/ pages. Aliases should be
added so that
takes the user to the appropriate location. It is appropriate to document constructors on the same page as the class and its methods; a stub is provided as an example in
On completion, the package will pass
R CMD build graph R CMD check graph_*gz
without warning or errors.
grep -r graphNEL graph/* | grep new
will return only entries from the constructor functions themselves; all direct uses of 'new' for constructing graphNEL (and graphAM)
The version number should be bumped so the most-minor digit is 1 more than the most-minor digit in the devel branch at the time of project completion.