diff --git a/.gitignore b/.gitignore index 6d5fe96..d57a4b2 100644 --- a/.gitignore +++ b/.gitignore @@ -1,4 +1,3 @@ -# These files are generated intermediary code. standard.ml r.ml r.mli diff --git a/Changelog b/Changelog new file mode 100644 index 0000000..4ba9b97 --- /dev/null +++ b/Changelog @@ -0,0 +1,10 @@ +2009-09-15 Maxence Guesdon + + * release 0.1 + +2009-09-14 Maxence Guesdon + + * add: ChangeLog + * mod: use ocaml{c,opt} instead of ocamlmklib + * new: projet ocaml-r hosted on gna.org + diff --git a/LICENSE b/LICENSE new file mode 100644 index 0000000..94a9ed0 --- /dev/null +++ b/LICENSE @@ -0,0 +1,674 @@ + GNU GENERAL PUBLIC LICENSE + Version 3, 29 June 2007 + + Copyright (C) 2007 Free Software Foundation, Inc. + Everyone is permitted to copy and distribute verbatim copies + of this license document, but changing it is not allowed. + + Preamble + + The GNU General Public License is a free, copyleft license for +software and other kinds of works. + + The licenses for most software and other practical works are designed +to take away your freedom to share and change the works. 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If not, see . + +Also add information on how to contact you by electronic and paper mail. + + If the program does terminal interaction, make it output a short +notice like this when it starts in an interactive mode: + + Copyright (C) + This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'. + This is free software, and you are welcome to redistribute it + under certain conditions; type `show c' for details. + +The hypothetical commands `show w' and `show c' should show the appropriate +parts of the General Public License. Of course, your program's commands +might be different; for a GUI interface, you would use an "about box". + + You should also get your employer (if you work as a programmer) or school, +if any, to sign a "copyright disclaimer" for the program, if necessary. +For more information on this, and how to apply and follow the GNU GPL, see +. + + The GNU General Public License does not permit incorporating your program +into proprietary programs. If your program is a subroutine library, you +may consider it more useful to permit linking proprietary applications with +the library. If this is what you want to do, use the GNU Lesser General +Public License instead of this License. But first, please read +. diff --git a/Makefile.am b/Makefile.am new file mode 100644 index 0000000..4fb922f --- /dev/null +++ b/Makefile.am @@ -0,0 +1,181 @@ +ACLOCAL_AMFLAGS = -I m4 + +RLIBDIR=/usr/lib/R/lib +RINCLUDES=-I . -I /usr/share/R/include +INCLUDES= -I +ocamldoc -I `ocamlc -where`/caml $(RINCLUDES) + +COMPFLAGS=$(INCLUDES) +LINKFLAGS=$(INCLUDES) -ccopt -L$(RLIBDIR) -cclib -lR +LINKFLAGS_BYTE=$(INCLUDES) -ccopt -L$(RLIBDIR) -cclib -lR + +all: build build-math + +build-math: + $(MAKE) -C math + +build: r.cma r.cmxa r.cmxs oCamlR.cmo oCamlR.cmx rbase.cma rbase.cmxa rstats.cma rstats.cmxa + +r.cma: dllr_stubs.so r.cmo + $(OCAMLC) -verbose -a -dllpath /usr/lib/R/lib -dllib dllr_stubs.so -dllib libR.so -o r.cma r.cmo + +r.cmxa: dllr_stubs.so r.cmx + $(OCAMLOPT) -verbose -a -ccopt -L/usr/lib/R/lib -cclib -lr_stubs -cclib -lR -o r.cmxa r.cmx + +r.cmxs: r.cmxa + $(OCAMLOPT) -shared -linkall -ccopt -L/usr/lib/R/lib -ccopt -L. -o $@ $< + +rbase.cma: rbase.cmo + $(OCAMLC) -verbose -a -o rbase.cma rbase.cmo + +rbase.cmxa: rbase.cmx + $(OCAMLOPT) -verbose -a -o rbase.cmxa rbase.cmx + +rstats.cma: rstats.cmo + $(OCAMLC) -verbose -a -o rstats.cma rstats.cmo + +rstats.cmxa: rstats.cmx + $(OCAMLOPT) -verbose -a -o rstats.cmxa rstats.cmx + +r.cmi: r.mli + $(OCAMLFIND) ocamlc -package calendar -verbose -c r.mli + +r.cmo: r.ml r.cmi + $(OCAMLFIND) ocamlc -package calendar -verbose -package unix -c r.ml + +r.cmx: r.ml r.cmi + $(OCAMLFIND) ocamlopt -package calendar -verbose -package unix -c r.ml + +oCamlR.cmo: + $(OCAMLFIND) ocamlc -verbose -c oCamlR.ml + +oCamlR.cmx: + $(OCAMLFIND) ocamlopt -verbose -c oCamlR.ml + +rbase.cmi: rbase.mli + $(OCAMLFIND) ocamlc -package calendar -verbose -c rbase.mli + +rbase.cmo: rbase.ml rbase.cmi + $(OCAMLFIND) ocamlc -package calendar -verbose -c rbase.ml + +rbase.cmx: rbase.ml rbase.cmi + $(OCAMLFIND) ocamlopt -package calendar -verbose -c rbase.ml + +rstats.cmi: rstats.mli + $(OCAMLFIND) ocamlc -verbose -c rstats.mli + +rstats.cmo: rstats.ml rstats.cmi + $(OCAMLFIND) ocamlc -verbose -c rstats.ml + +rstats.cmx: rstats.ml rstats.cmi + $(OCAMLFIND) ocamlopt -verbose -c rstats.ml + +r.ml: standard.ml base.ml + cat \ + r_Env.ml \ + standard.ml \ + sexptype.ml \ + sexprec.ml \ + data.ml \ + allocation.ml \ + read_internal.ml \ + write_internal.ml \ + lazy.ml \ + symbols.ml \ + conversion.ml \ + internal.ml \ + s3.ml \ + s4.ml \ + parser.ml \ + reduction.ml \ + initialisation.ml \ + base.ml \ + > r.ml + +r.mli: base.mli + cat \ + incipit.mli \ + r_Env.mli \ + standard.mli \ + sexptype.mli \ + data.mli \ + symbols.mli \ + conversion.mli \ + internal.mli \ + s3.mli \ + s4.mli \ + parser.mli \ + reduction.mli \ + initialisation.mli \ + base.mli \ + > r.mli + +standard.ml: standard.R + R --silent --vanilla --slave < standard.R > standard.ml + +base.ml: + cat \ + base/incipit.ml \ + base/listing.ml \ + base/dataFrame.ml \ + base/date.ml \ + base/excipit.ml \ + > base.ml + +base.mli: + cat \ + base/incipit.mli \ + base/listing.mli \ + base/dataFrame.mli \ + base/date.mli \ + base/excipit.mli \ + > base.mli + +rbase.ml: + cat \ + r-base/main.ml \ + r-base/listing.ml \ + r-base/dataFrame.ml \ + r-base/date.ml \ + > rbase.ml + +rbase.mli: + cat \ + r-base/main.mli \ + r-base/listing.mli \ + r-base/dataFrame.mli \ + r-base/date.mli \ + > rbase.mli + +rstats.ml: + cat \ + r-stats/main.ml \ + > rstats.ml + +rstats.mli: + cat \ + r-stats/main.mli \ + > rstats.mli + +r_stubs.o: r_stubs.c + $(OCAMLOPT) -verbose -ccopt -Wall $(COMPFLAGS) -ccopt -fPIC -c $< + +libr_stubs.a: r_stubs.o + ar rcs libr_stubs.a r_stubs.o + +dllr_stubs.so: libr_stubs.a r_stubs.o + $(OCAMLMKLIB) -verbose -o r_stubs r_stubs.o + +clean: + $(MAKE) -C math clean + rm -f standard.ml base.ml base.mli r.ml r.mli rbase.ml rbase.mli rstats.ml rstats.mli + rm -f *.o *.so *.a *.cmi *.cmo *.cmx *.cma *.cmxa *.cmxs + +test: build + $(OCAML) -init ocamlinit + +install: remove + $(OCAMLFIND) install R META *.a *.cm[ai] *.cmxa dllr_stubs.so + +remove: + $(OCAMLFIND) remove R + diff --git a/autoconf-build b/autoconf-build new file mode 100755 index 0000000..3278c2c --- /dev/null +++ b/autoconf-build @@ -0,0 +1,3 @@ +AUTOMAKE='automake --foreign' autoreconf -i +./configure +make diff --git a/autoconf-clean b/autoconf-clean new file mode 100755 index 0000000..9652a01 --- /dev/null +++ b/autoconf-clean @@ -0,0 +1,11 @@ +make clean +rm -f Makefile +rm -f Makefile.in +rm -f aclocal.m4 +rm -Rf autom4te.cache/ +rm -f config.log +rm -f config.status +rm -f configure +rm -f install-sh +rm -f missing + diff --git a/configure.ac b/configure.ac new file mode 100644 index 0000000..102f675 --- /dev/null +++ b/configure.ac @@ -0,0 +1,29 @@ +AC_INIT([ocaml-r], [0.2]) +AM_INIT_AUTOMAKE + +AC_CONFIG_MACRO_DIR([m4]) + +AC_PROG_CC + +AC_PROG_OCAML +if test "$OCAMLC" = "no"; then + AC_MSG_ERROR([You must install the OCaml compiler.]) +fi + +AC_PROG_FINDLIB +if test "$OCAMLFIND" = "no"; then + AC_MSG_ERROR([You must install OCaml findlib (the ocamlfind command)]) +fi + +AC_CHECK_OCAML_PKG([unix]) +if test "$OCAML_PKG_unix" = "no"; then + AC_MSG_ERROR([Please install OCaml findlib module 'unix'.]) +fi + +AC_CHECK_OCAML_PKG([calendar]) +if test "$OCAML_PKG_calendar" = "no"; then + AC_MSG_ERROR([Please install OCaml findlib module 'calendar'.]) +fi + +AC_CONFIG_FILES([Makefile]) +AC_OUTPUT diff --git a/header b/header new file mode 100644 index 0000000..4fad166 --- /dev/null +++ b/header @@ -0,0 +1,24 @@ + OCaml-R + + Copyright (C) 2008-2010 Institut National de Recherche en + Informatique et en Automatique. All rights reserved. + + Copyright (C) 2009-2010 Guillaume Yziquel. All rights reserved. + + This program is free software; you can redistribute it and/or modify + it under the terms of the GNU General Public License as + published by the Free Software Foundation; either version 3 of the + License, or any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU Library General Public License for more details. + + You should have received a copy of the GNU General Public + License along with this program; if not, write to the Free Software + Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA + 02111-1307 USA + + Contact: Maxence.Guesdon@inria.fr + guillaume.yziquel@citycable.ch diff --git a/m4/ocaml.m4 b/m4/ocaml.m4 new file mode 100644 index 0000000..479f3a8 --- /dev/null +++ b/m4/ocaml.m4 @@ -0,0 +1,240 @@ +dnl autoconf macros for OCaml +dnl +dnl Copyright © 2009 Richard W.M. Jones +dnl Copyright © 2009 Stefano Zacchiroli +dnl Copyright © 2000-2005 Olivier Andrieu +dnl Copyright © 2000-2005 Jean-Christophe Filliâtre +dnl Copyright © 2000-2005 Georges Mariano +dnl +dnl For documentation, please read the ocaml.m4 man page. + +AC_DEFUN([AC_PROG_OCAML], +[dnl + # checking for ocamlc + AC_CHECK_TOOL([OCAMLC],[ocamlc],[no]) + + if test "$OCAMLC" != "no"; then + OCAMLVERSION=`$OCAMLC -v | sed -n -e 's|.*version* *\(.*\)$|\1|p'` + AC_MSG_RESULT([OCaml version is $OCAMLVERSION]) + # If OCAMLLIB is set, use it + if test "$OCAMLLIB" = ""; then + OCAMLLIB=`$OCAMLC -where 2>/dev/null || $OCAMLC -v|tail -1|cut -d ' ' -f 4` + else + AC_MSG_RESULT([OCAMLLIB previously set; preserving it.]) + fi + AC_MSG_RESULT([OCaml library path is $OCAMLLIB]) + + AC_SUBST([OCAMLVERSION]) + AC_SUBST([OCAMLLIB]) + + # checking for ocamlopt + AC_CHECK_TOOL([OCAMLOPT],[ocamlopt],[no]) + OCAMLBEST=byte + if test "$OCAMLOPT" = "no"; then + AC_MSG_WARN([Cannot find ocamlopt; bytecode compilation only.]) + else + TMPVERSION=`$OCAMLOPT -v | sed -n -e 's|.*version* *\(.*\)$|\1|p' ` + if test "$TMPVERSION" != "$OCAMLVERSION" ; then + AC_MSG_RESULT([versions differs from ocamlc; ocamlopt discarded.]) + OCAMLOPT=no + else + OCAMLBEST=opt + fi + fi + + AC_SUBST([OCAMLBEST]) + + # checking for ocamlc.opt + AC_CHECK_TOOL([OCAMLCDOTOPT],[ocamlc.opt],[no]) + if test "$OCAMLCDOTOPT" != "no"; then + TMPVERSION=`$OCAMLCDOTOPT -v | sed -n -e 's|.*version* *\(.*\)$|\1|p' ` + if test "$TMPVERSION" != "$OCAMLVERSION" ; then + AC_MSG_RESULT([versions differs from ocamlc; ocamlc.opt discarded.]) + else + OCAMLC=$OCAMLCDOTOPT + fi + fi + + # checking for ocamlopt.opt + if test "$OCAMLOPT" != "no" ; then + AC_CHECK_TOOL([OCAMLOPTDOTOPT],[ocamlopt.opt],[no]) + if test "$OCAMLOPTDOTOPT" != "no"; then + TMPVERSION=`$OCAMLOPTDOTOPT -v | sed -n -e 's|.*version* *\(.*\)$|\1|p' ` + if test "$TMPVERSION" != "$OCAMLVERSION" ; then + AC_MSG_RESULT([version differs from ocamlc; ocamlopt.opt discarded.]) + else + OCAMLOPT=$OCAMLOPTDOTOPT + fi + fi + fi + + AC_SUBST([OCAMLOPT]) + fi + + AC_SUBST([OCAMLC]) + + # checking for ocaml toplevel + AC_CHECK_TOOL([OCAML],[ocaml],[no]) + + # checking for ocamldep + AC_CHECK_TOOL([OCAMLDEP],[ocamldep],[no]) + + # checking for ocamlmktop + AC_CHECK_TOOL([OCAMLMKTOP],[ocamlmktop],[no]) + + # checking for ocamlmklib + AC_CHECK_TOOL([OCAMLMKLIB],[ocamlmklib],[no]) + + # checking for ocamldoc + AC_CHECK_TOOL([OCAMLDOC],[ocamldoc],[no]) + + # checking for ocamlbuild + AC_CHECK_TOOL([OCAMLBUILD],[ocamlbuild],[no]) +]) + + +AC_DEFUN([AC_PROG_OCAMLLEX], +[dnl + # checking for ocamllex + AC_CHECK_TOOL([OCAMLLEX],[ocamllex],[no]) + if test "$OCAMLLEX" != "no"; then + AC_CHECK_TOOL([OCAMLLEXDOTOPT],[ocamllex.opt],[no]) + if test "$OCAMLLEXDOTOPT" != "no"; then + OCAMLLEX=$OCAMLLEXDOTOPT + fi + fi + AC_SUBST([OCAMLLEX]) +]) + +AC_DEFUN([AC_PROG_OCAMLYACC], +[dnl + AC_CHECK_TOOL([OCAMLYACC],[ocamlyacc],[no]) + AC_SUBST([OCAMLYACC]) +]) + + +AC_DEFUN([AC_PROG_CAMLP4], +[dnl + AC_REQUIRE([AC_PROG_OCAML])dnl + + # checking for camlp4 + AC_CHECK_TOOL([CAMLP4],[camlp4],[no]) + if test "$CAMLP4" != "no"; then + TMPVERSION=`$CAMLP4 -v 2>&1| sed -n -e 's|.*version *\(.*\)$|\1|p'` + if test "$TMPVERSION" != "$OCAMLVERSION" ; then + AC_MSG_RESULT([versions differs from ocamlc]) + CAMLP4=no + fi + fi + AC_SUBST([CAMLP4]) + + # checking for companion tools + AC_CHECK_TOOL([CAMLP4BOOT],[camlp4boot],[no]) + AC_CHECK_TOOL([CAMLP4O],[camlp4o],[no]) + AC_CHECK_TOOL([CAMLP4OF],[camlp4of],[no]) + AC_CHECK_TOOL([CAMLP4OOF],[camlp4oof],[no]) + AC_CHECK_TOOL([CAMLP4ORF],[camlp4orf],[no]) + AC_CHECK_TOOL([CAMLP4PROF],[camlp4prof],[no]) + AC_CHECK_TOOL([CAMLP4R],[camlp4r],[no]) + AC_CHECK_TOOL([CAMLP4RF],[camlp4rf],[no]) + AC_SUBST([CAMLP4BOOT]) + AC_SUBST([CAMLP4O]) + AC_SUBST([CAMLP4OF]) + AC_SUBST([CAMLP4OOF]) + AC_SUBST([CAMLP4ORF]) + AC_SUBST([CAMLP4PROF]) + AC_SUBST([CAMLP4R]) + AC_SUBST([CAMLP4RF]) +]) + + +AC_DEFUN([AC_PROG_FINDLIB], +[dnl + AC_REQUIRE([AC_PROG_OCAML])dnl + + # checking for ocamlfind + AC_CHECK_TOOL([OCAMLFIND],[ocamlfind],[no]) + AC_SUBST([OCAMLFIND]) +]) + + +dnl Thanks to Jim Meyering for working this next bit out for us. +dnl XXX We should define AS_TR_SH if it's not defined already +dnl (eg. for old autoconf). +AC_DEFUN([AC_CHECK_OCAML_PKG], +[dnl + AC_REQUIRE([AC_PROG_FINDLIB])dnl + + AC_MSG_CHECKING([for OCaml findlib package $1]) + + unset found + unset pkg + found=no + for pkg in $1 $2 ; do + if $OCAMLFIND query $pkg >/dev/null 2>/dev/null; then + AC_MSG_RESULT([found]) + AS_TR_SH([OCAML_PKG_$1])=$pkg + found=yes + break + fi + done + if test "$found" = "no" ; then + AC_MSG_RESULT([not found]) + AS_TR_SH([OCAML_PKG_$1])=no + fi + + AC_SUBST(AS_TR_SH([OCAML_PKG_$1])) +]) + + +AC_DEFUN([AC_CHECK_OCAML_MODULE], +[dnl + AC_MSG_CHECKING([for OCaml module $2]) + + cat > conftest.ml <&5 2>&5 ; then + found=yes + break + fi + done + + if test "$found" ; then + AC_MSG_RESULT([$$1]) + else + AC_MSG_RESULT([not found]) + $1=no + fi + AC_SUBST([$1]) +]) + + +dnl XXX Cross-compiling +AC_DEFUN([AC_CHECK_OCAML_WORD_SIZE], +[dnl + AC_REQUIRE([AC_PROG_OCAML])dnl + AC_MSG_CHECKING([for OCaml compiler word size]) + cat > conftest.ml < conftest.ml <