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#1554 fix indexing for FEM entries - #1556

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rtimms merged 4 commits into
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issue-1554-2D-processed-var
Jul 21, 2021
Merged

rtimms merged 4 commits into
developfrom
issue-1554-2D-processed-var

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@rtimms

@rtimms rtimms commented Jul 20, 2021

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Description

Fixes the order of the indexing for the entries of variables solved using FEM

Fixes #1554

Type of change

Please add a line in the relevant section of CHANGELOG.md to document the change (include PR #) - note reverse order of PR #s. If necessary, also add to the list of breaking changes.

  • New feature (non-breaking change which adds functionality)
  • Optimization (back-end change that speeds up the code)
  • Bug fix (non-breaking change which fixes an issue)

Key checklist:

  • No style issues: $ flake8
  • All tests pass: $ python run-tests.py --unit
  • The documentation builds: $ cd docs and then $ make clean; make html

You can run all three at once, using $ python run-tests.py --quick.

Further checks:

  • Code is commented, particularly in hard-to-understand areas
  • Tests added that prove fix is effective or that feature works

@codecov

codecov Bot commented Jul 20, 2021 •

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Codecov Report

Merging #1556 (7d611b5) into develop (002ad15) will increase coverage by 0.50%.
The diff coverage is n/a.

❗ Current head 7d611b5 differs from pull request most recent head 7b4905d. Consider uploading reports for the commit 7b4905d to get more accurate results
Impacted file tree graph

@@             Coverage Diff             @@
##           develop    #1556      +/-   ##
===========================================
+ Coverage    97.77%   98.28%   +0.50%     
===========================================
  Files          242      310      +68     
  Lines        12639    17398    +4759     
===========================================
+ Hits         12358    17099    +4741     
- Misses         281      299      +18     
Impacted Files Coverage Δ
pybamm/__init__.py 94.95% <ø> (ø)
pybamm/batch_study.py 100.00% <ø> (ø)
pybamm/citations.py 100.00% <ø> (ø)
pybamm/discretisations/discretisation.py 99.78% <ø> (+<0.01%) ⬆️
pybamm/experiments/experiment.py 100.00% <ø> (+1.81%) ⬆️
pybamm/expression_tree/array.py 100.00% <ø> (ø)
pybamm/expression_tree/binary_operators.py 99.67% <ø> (+4.71%) ⬆️
pybamm/expression_tree/broadcasts.py 100.00% <ø> (ø)
pybamm/expression_tree/concatenations.py 98.13% <ø> (+0.68%) ⬆️
pybamm/expression_tree/exceptions.py 100.00% <ø> (ø)
... and 322 more

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@brosaplanella brosaplanella left a comment

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Looks good, thanks Rob! Just see my comment on the commented line.

quick_plot.slider_update(1)

# check 2D (y,z space) variables update properly for different time units
# Note: these should be the transpose of the entries in the processed variable

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I am confused: the comment says it should be the transpose but below it is not transposed

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In the test we do, e.g., np.testing.assert_array_almost_equal(qp_data.T, phi_n[:, :, 0]) so that qp_data is transposed

@rtimms
rtimms merged commit 396c9ef into develop Jul 21, 2021
@rtimms
rtimms deleted the issue-1554-2D-processed-var branch July 21, 2021 13:45
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Dimensions interchanged in 2D processed variable

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