PyBEL

Repositories

• pybel

  A pure Python package for parsing, validating, compiling, and converting biological knowledge graphs encoded in BEL

  bioinformatics systems-biology networks bel domain-specific-language biological-expression-language networks-biology
  Python MIT 17 39 12 (1 issue needs help) 1 Updated Feb 26, 2020

• bel-repository

  A utility for loading data from repositories of BEL documents

  biological-expression-language pybel
  Python MIT 0 0 4 0 Updated Nov 26, 2019

• pybel-git

  Git and continuous integration tools for PyBEL to assist in curating BEL

  continuous-integration biological-expression-language biocuration
  Python MIT 1 1 3 0 Updated Nov 20, 2019

• pybel-tools

  A PyBEL extension for analyzing BEL graphs

  bioinformatics systems-biology networks biological-expression-language
  Jupyter Notebook MIT 3 4 16 0 Updated Nov 15, 2019

• bel-resources

  Utilities for BEL resource files.

  ontologies terminologies biological-expression-language
  Python MIT 0 0 0 0 Updated Nov 15, 2019

• pybel-jupyter

  A PyBEL extension for Jupyter notebooks

  jupyter network-visualization biological-expression-language
  Python MIT 0 1 1 0 Updated Nov 13, 2019

• pybel-notebooks

  Notebooks demonstrating the usage of PyBEL and PyBEL Tools

  bioinformatics systems-biology nbviewer networks biological-expression-language
  Jupyter Notebook Apache-2.0 2 1 6 0 Updated Nov 13, 2019

• pybel-cx

  A PyBEL extension for interconversion with CX

  systems-biology cytoscape biological-expression-language networks-biology
  Python MIT 0 0 0 0 Updated Nov 3, 2019

• pybel-admin

  A PyBEL extension for interacting with its database through Flask Admin
  Python MIT 0 0 0 0 Updated Sep 18, 2019

• bep

  Forked from belbio/bep

  BEL Enhancement Proposals
  Apache-2.0 3 0 0 0 Updated Jul 25, 2019

• pybel.github.io
  0 0 0 0 Updated Jun 27, 2019

• pybel-art

  Artwork for PyBEL

  inkscape logotype
  0 0 0 0 Updated Feb 14, 2019

• pybel-ols

  A PyBEL extension for building BEL resources with the EBI Ontology Lookup Service.
  Python MIT 0 0 0 0 Updated Jan 30, 2019

• pybel-resources Archived

  Curated and automatically generated BEL resources

  ontologies terminologies namespaces biological-expression-language
  0 0 2 0 Updated Jan 7, 2019

• pybel-github-example

  A test repository containing BEL to validate with Travis-CI
  0 0 0 0 Updated Dec 22, 2018

• pybel-application-note

  LaTeX source for "PyBEL: a computational framework for Biological Expression Language"

  systems-biology biological-expression-language
  TeX 0 0 0 0 Updated Aug 10, 2018

• bel2abm-application-note

  LaTeX source for "BEL2ABM: agent-based simulation of static models in Biological Expression Language"

  agent-based-modeling biological-expression-language
  TeX 0 0 0 0 Updated Aug 10, 2018

• pybel-test-extension Archived

  An example of a PyBEL extension.
  Python Apache-2.0 0 0 0 0 Updated Jun 4, 2018

• pybel-artifactory

  A PyBEL extension for handling BEL resources with Artifactory.
  Python MIT 0 0 0 0 Updated May 26, 2018

• belql

  A structured query language for BEL
  Apache-2.0 0 0 0 0 Updated Apr 12, 2018

• pybelql

  An implementation of BELQL using PyBEL
  Apache-2.0 0 0 0 0 Updated Mar 25, 2018

• bel2abm

  Conversion of BEL to Agent Based Models

  bioinformatics systems-biology agent-based-modeling networks-biology
  Apache-2.0 0 0 1 0 Updated Dec 9, 2017

• language

  Forked from OpenBEL/language

  Specification for BEL
  GAP 4 0 0 0 Updated Nov 20, 2017