From fbe4f07bef4b42288e1b2a0dd0f90e1ad043adde Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jan=20Jan=C3=9Fen?= <janssen@mpie.de>
Date: Tue, 25 Mar 2025 18:06:27 +0100
Subject: [PATCH] Execute notebooks individually

---
 .ci_support/build_notebooks.sh | 11 -----------
 .github/workflows/pipeline.yml |  8 +++++---
 2 files changed, 5 insertions(+), 14 deletions(-)
 delete mode 100755 .ci_support/build_notebooks.sh

diff --git a/.ci_support/build_notebooks.sh b/.ci_support/build_notebooks.sh
deleted file mode 100755
index 08c14214..00000000
--- a/.ci_support/build_notebooks.sh
+++ /dev/null
@@ -1,11 +0,0 @@
-#!/bin/bash
-# execute notebooks
-i=0;
-for notebook in $(ls notebooks/*.ipynb); do
-    papermill ${notebook} ${notebook%.*}-out.${notebook##*.} -k python3 || i=$((i+1));
-done;
-
-# push error to next level
-if [ $i -gt 0 ]; then
-    exit 1;
-fi;
\ No newline at end of file
diff --git a/.github/workflows/pipeline.yml b/.github/workflows/pipeline.yml
index 12658130..818fcdd9 100644
--- a/.github/workflows/pipeline.yml
+++ b/.github/workflows/pipeline.yml
@@ -167,9 +167,11 @@ jobs:
       - name: Notebooks
         shell: bash -l {0}
         timeout-minutes: 5
-        run: >
-          flux start
-          .ci_support/build_notebooks.sh
+        run: |
+          papermill notebooks/1-single-node.ipynb notebooks/1-single-node-out.ipynb -k python3
+          flux start papermill notebooks/2-hpc-cluster.ipynb notebooks/2-hpc-cluster-out.ipynb -k python3
+          flux start papermill notebooks/3-hpc-job.ipynb notebooks/3-hpc-job-out.ipynb -k python3
+          papermill notebooks/4-developer.ipynb notebooks/4-developer-out.ipynb -k python3
 
   unittest_flux_mpich:
     needs: [black]