diff --git a/.ci_support/environment.yml b/.ci_support/environment.yml
index 3778ff77d..f8a527766 100644
--- a/.ci_support/environment.yml
+++ b/.ci_support/environment.yml
@@ -8,13 +8,12 @@ dependencies:
 - codacy-coverage
 - matplotlib-base =3.8.0
 - nglview =3.0.8
-- numpy =1.23.5
+- numpy =1.26.0
 - phonopy =2.20.0
 - plotly =5.17.0
-- pymatgen =2023.9.25
+- pymatgen =2023.9.10
 - pyscal =2.10.18
 - scikit-learn =1.3.0
 - scipy =1.11.3
 - spglib =2.0.2
-- sqsgenerator =0.2
-- pyxtal =0.6.0
+- sqsgenerator =0.3
diff --git a/setup.py b/setup.py
index 5ce7714f7..1f03ffc0e 100644
--- a/setup.py
+++ b/setup.py
@@ -32,17 +32,17 @@
     install_requires=[
         'ase==3.22.1',
         'matplotlib==3.8.0',  # ase already requires matplotlib
-        'numpy==1.23.5',  # ase already requires numpy
+        'numpy==1.26.0',  # ase already requires numpy
         'scipy==1.11.3',  # ase already requires scipy
     ],
     extras_require={
-        "grainboundary": ['aimsgb==1.1.0', 'pymatgen==2023.9.25'],
+        "grainboundary": ['aimsgb==1.1.0', 'pymatgen==2023.9.10'],
         "pyscal": ['pyscal2==2.10.18'],
         "nglview": ['nglview==3.0.8'],
         "plotly": ['plotly==5.17.0'],
         "clusters": ['scikit-learn==1.3.1'],
         "symmetry": ['spglib==2.1.0'],
-        "surface": ['spglib==2.1.0', 'pymatgen==2023.9.25'],
+        "surface": ['spglib==2.1.0', 'pymatgen==2023.9.10'],
         "phonopy": ['phonopy==2.20.0', 'spglib==2.1.0'],
         "pyxtal": ['pyxtal==0.6.0']
     },