travis_fold:start:worker_info Worker information hostname: b6c7b568-adfe-4252-924f-160bc4862a57@1.production-2-worker-org-gce-499c version: v6.2.0 https://github.com/travis-ci/worker/tree/5e5476e01646095f48eec13196fdb3faf8f5cbf7 instance: travis-job-308eec92-b518-4206-aed6-f0f665ceceef travis-ci-garnet-trusty-1512502259-986baf0 (via amqp) startup: 6.604814772s travis_fold:end:worker_info travis_fold:start:system_info Build system information Build language: ruby Build group: stable Build dist: trusty Build id: 531267803 Job id: 531267804 Runtime kernel version: 4.4.0-101-generic travis-build version: 3efcde6b1 Build image provisioning date and time Tue Dec 5 19:58:13 UTC 2017 Operating System Details Distributor ID: Ubuntu Description: Ubuntu 14.04.5 LTS Release: 14.04 Codename: trusty Cookbooks Version 7c2c6a6 https://github.com/travis-ci/travis-cookbooks/tree/7c2c6a6 git version git version 2.15.1 bash version GNU bash, version 4.3.11(1)-release (x86_64-pc-linux-gnu) gcc version gcc (Ubuntu 4.8.4-2ubuntu1~14.04.3) 4.8.4 Copyright (C) 2013 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. docker version Client: Version: 17.09.0-ce API version: 1.32 Go version: go1.8.3 Git commit: afdb6d4 Built: Tue Sep 26 22:42:38 2017 OS/Arch: linux/amd64 Server: Version: 17.09.0-ce API version: 1.32 (minimum version 1.12) Go version: go1.8.3 Git commit: afdb6d4 Built: Tue Sep 26 22:41:20 2017 OS/Arch: linux/amd64 Experimental: false clang version clang version 5.0.0 (tags/RELEASE_500/final) Target: x86_64-unknown-linux-gnu Thread model: posix InstalledDir: /usr/local/clang-5.0.0/bin jq version jq-1.5 bats version Bats 0.4.0 shellcheck version 0.4.6 shfmt version v2.0.0 ccache version ccache version 3.1.9 Copyright (C) 2002-2007 Andrew Tridgell Copyright (C) 2009-2011 Joel Rosdahl This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version. cmake version cmake version 3.9.2 CMake suite maintained and supported by Kitware (kitware.com/cmake). heroku version heroku-cli/6.14.39-addc925 (linux-x64) node-v9.2.0 imagemagick version Version: ImageMagick 6.7.7-10 2017-07-31 Q16 http://www.imagemagick.org md5deep version 4.2 mercurial version Mercurial Distributed SCM (version 4.2.2) (see https://mercurial-scm.org for more information) Copyright (C) 2005-2017 Matt Mackall and others This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. mysql version mysql Ver 14.14 Distrib 5.6.33, for debian-linux-gnu (x86_64) using EditLine wrapper openssl version OpenSSL 1.0.1f 6 Jan 2014 packer version Packer v1.0.2 Your version of Packer is out of date! The latest version is 1.1.2. You can update by downloading from www.packer.io postgresql client version psql (PostgreSQL) 9.6.6 ragel version Ragel State Machine Compiler version 6.8 Feb 2013 Copyright (c) 2001-2009 by Adrian Thurston subversion version svn, version 1.8.8 (r1568071) compiled Aug 10 2017, 17:20:39 on x86_64-pc-linux-gnu Copyright (C) 2013 The Apache Software Foundation. This software consists of contributions made by many people; see the NOTICE file for more information. Subversion is open source software, see http://subversion.apache.org/ The following repository access (RA) modules are available: * ra_svn : Module for accessing a repository using the svn network protocol. - with Cyrus SASL authentication - handles 'svn' scheme * ra_local : Module for accessing a repository on local disk. - handles 'file' scheme * ra_serf : Module for accessing a repository via WebDAV protocol using serf. - using serf 1.3.3 - handles 'http' scheme - handles 'https' scheme sudo version Sudo version 1.8.9p5 Configure options: --prefix=/usr -v --with-all-insults --with-pam --with-fqdn --with-logging=syslog --with-logfac=authpriv --with-env-editor --with-editor=/usr/bin/editor --with-timeout=15 --with-password-timeout=0 --with-passprompt=[sudo] password for %p: --without-lecture --with-tty-tickets --disable-root-mailer --enable-admin-flag --with-sendmail=/usr/sbin/sendmail --with-timedir=/var/lib/sudo --mandir=/usr/share/man --libexecdir=/usr/lib/sudo --with-sssd --with-sssd-lib=/usr/lib/x86_64-linux-gnu --with-selinux Sudoers policy plugin version 1.8.9p5 Sudoers file grammar version 43 Sudoers path: /etc/sudoers Authentication methods: 'pam' Syslog facility if syslog is being used for logging: authpriv Syslog priority to use when user authenticates successfully: notice Syslog priority to use when user authenticates unsuccessfully: alert Send mail if the user is not in sudoers Use a separate timestamp for each user/tty combo Lecture user the first time they run sudo Root may run sudo Allow some information gathering to give useful error messages Require fully-qualified hostnames in the sudoers file Visudo will honor the EDITOR environment variable Set the LOGNAME and USER environment variables Length at which to wrap log file lines (0 for no wrap): 80 Authentication timestamp timeout: 15.0 minutes Password prompt timeout: 0.0 minutes Number of tries to enter a password: 3 Umask to use or 0777 to use user's: 022 Path to mail program: /usr/sbin/sendmail Flags for mail program: -t Address to send mail to: root Subject line for mail messages: *** SECURITY information for %h *** Incorrect password message: Sorry, try again. Path to authentication timestamp dir: /var/lib/sudo Default password prompt: [sudo] password for %p: Default user to run commands as: root Value to override user's $PATH with: /usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin Path to the editor for use by visudo: /usr/bin/editor When to require a password for 'list' pseudocommand: any When to require a password for 'verify' pseudocommand: all File descriptors >= 3 will be closed before executing a command Environment variables to check for sanity: TZ TERM LINGUAS LC_* LANGUAGE LANG COLORTERM Environment variables to remove: RUBYOPT RUBYLIB PYTHONUSERBASE PYTHONINSPECT PYTHONPATH PYTHONHOME TMPPREFIX ZDOTDIR READNULLCMD NULLCMD FPATH PERL5DB PERL5OPT PERL5LIB PERLLIB PERLIO_DEBUG JAVA_TOOL_OPTIONS SHELLOPTS GLOBIGNORE PS4 BASH_ENV ENV TERMCAP TERMPATH TERMINFO_DIRS TERMINFO _RLD* LD_* PATH_LOCALE NLSPATH HOSTALIASES RES_OPTIONS LOCALDOMAIN CDPATH IFS Environment variables to preserve: JAVA_HOME TRAVIS CI DEBIAN_FRONTEND XAUTHORIZATION XAUTHORITY PS2 PS1 PATH LS_COLORS KRB5CCNAME HOSTNAME HOME DISPLAY COLORS Locale to use while parsing sudoers: C Directory in which to store input/output logs: /var/log/sudo-io File in which to store the input/output log: %{seq} Add an entry to the utmp/utmpx file when allocating a pty PAM service name to use PAM service name to use for login shells Create a new PAM session for the command to run in Maximum I/O log sequence number: 0 Local IP address and netmask pairs: 10.240.0.28/255.255.255.255 172.17.0.1/255.255.0.0 Sudoers I/O plugin version 1.8.9p5 gzip version gzip 1.6 Copyright (C) 2007, 2010, 2011 Free Software Foundation, Inc. Copyright (C) 1993 Jean-loup Gailly. This is free software. You may redistribute copies of it under the terms of the GNU General Public License . There is NO WARRANTY, to the extent permitted by law. Written by Jean-loup Gailly. zip version Copyright (c) 1990-2008 Info-ZIP - Type 'zip "-L"' for software license. This is Zip 3.0 (July 5th 2008), by Info-ZIP. Currently maintained by E. Gordon. Please send bug reports to the authors using the web page at www.info-zip.org; see README for details. Latest sources and executables are at ftp://ftp.info-zip.org/pub/infozip, as of above date; see http://www.info-zip.org/ for other sites. Compiled with gcc 4.8.2 for Unix (Linux ELF) on Oct 21 2013. Zip special compilation options: USE_EF_UT_TIME (store Universal Time) BZIP2_SUPPORT (bzip2 library version 1.0.6, 6-Sept-2010) bzip2 code and library copyright (c) Julian R Seward (See the bzip2 license for terms of use) SYMLINK_SUPPORT (symbolic links supported) LARGE_FILE_SUPPORT (can read and write large files on file system) ZIP64_SUPPORT (use Zip64 to store large files in archives) UNICODE_SUPPORT (store and read UTF-8 Unicode paths) STORE_UNIX_UIDs_GIDs (store UID/GID sizes/values using new extra field) UIDGID_NOT_16BIT (old Unix 16-bit UID/GID extra field not used) [encryption, version 2.91 of 05 Jan 2007] (modified for Zip 3) Encryption notice: The encryption code of this program is not copyrighted and is put in the public domain. It was originally written in Europe and, to the best of our knowledge, can be freely distributed in both source and object forms from any country, including the USA under License Exception TSU of the U.S. Export Administration Regulations (section 740.13(e)) of 6 June 2002. Zip environment options: ZIP: [none] ZIPOPT: [none] vim version VIM - Vi IMproved 7.4 (2013 Aug 10, compiled Nov 24 2016 16:43:18) Included patches: 1-52 Extra patches: 8.0.0056 Modified by pkg-vim-maintainers@lists.alioth.debian.org Compiled by buildd@ Huge version without GUI. Features included (+) or not (-): +acl +farsi +mouse_netterm +syntax +arabic +file_in_path +mouse_sgr +tag_binary +autocmd +find_in_path -mouse_sysmouse +tag_old_static -balloon_eval +float +mouse_urxvt -tag_any_white -browse +folding +mouse_xterm -tcl ++builtin_terms -footer +multi_byte +terminfo +byte_offset +fork() +multi_lang +termresponse +cindent +gettext -mzscheme +textobjects -clientserver -hangul_input +netbeans_intg +title -clipboard +iconv +path_extra -toolbar +cmdline_compl +insert_expand -perl +user_commands +cmdline_hist +jumplist +persistent_undo +vertsplit +cmdline_info +keymap +postscript +virtualedit +comments +langmap +printer +visual +conceal +libcall +profile +visualextra +cryptv +linebreak +python +viminfo +cscope +lispindent -python3 +vreplace +cursorbind +listcmds +quickfix +wildignore +cursorshape +localmap +reltime +wildmenu +dialog_con -lua +rightleft +windows +diff +menu -ruby +writebackup +digraphs +mksession +scrollbind -X11 -dnd +modify_fname +signs -xfontset -ebcdic +mouse +smartindent -xim +emacs_tags -mouseshape -sniff -xsmp +eval +mouse_dec +startuptime -xterm_clipboard +ex_extra +mouse_gpm +statusline -xterm_save +extra_search -mouse_jsbterm -sun_workshop -xpm system vimrc file: "$VIM/vimrc" user vimrc file: "$HOME/.vimrc" 2nd user vimrc file: "~/.vim/vimrc" user exrc file: "$HOME/.exrc" fall-back for $VIM: "/usr/share/vim" Compilation: gcc -c -I. -Iproto -DHAVE_CONFIG_H -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 Linking: gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o vim -lm -ltinfo -lnsl -lselinux -lacl -lattr -lgpm -ldl -L/usr/lib/python2.7/config-x86_64-linux-gnu -lpython2.7 -lpthread -ldl -lutil -lm -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions iptables version iptables v1.4.21 curl version curl 7.35.0 (x86_64-pc-linux-gnu) libcurl/7.35.0 OpenSSL/1.0.1f zlib/1.2.8 libidn/1.28 librtmp/2.3 wget version GNU Wget 1.15 built on linux-gnu. rsync version rsync version 3.1.0 protocol version 31 gimme version v1.2.0 nvm version 0.33.6 perlbrew version /home/travis/perl5/perlbrew/bin/perlbrew - App::perlbrew/0.80 phpenv version rbenv 1.1.1-25-g6aa70b6 rvm version rvm 1.29.3 (latest) by Michal Papis, Piotr Kuczynski, Wayne E. Seguin [https://rvm.io] default ruby version ruby 2.4.1p111 (2017-03-22 revision 58053) [x86_64-linux] CouchDB version couchdb 1.6.1 ElasticSearch version 5.5.0 Installed Firefox version firefox 56.0.2 MongoDB version MongoDB 3.4.10 PhantomJS version 2.1.1 Pre-installed PostgreSQL versions 9.2.24 9.3.20 9.4.15 9.5.10 9.6.6 RabbitMQ Version 3.6.14 Redis version redis-server 4.0.6 riak version 2.2.3 Pre-installed Go versions 1.7.4 ant version Apache Ant(TM) version 1.9.3 compiled on April 8 2014 mvn version Apache Maven 3.5.2 (138edd61fd100ec658bfa2d307c43b76940a5d7d; 2017-10-18T07:58:13Z) Maven home: /usr/local/maven-3.5.2 Java version: 1.8.0_151, vendor: Oracle Corporation Java home: /usr/lib/jvm/java-8-oracle/jre Default locale: en_US, platform encoding: UTF-8 OS name: "linux", version: "4.4.0-98-generic", arch: "amd64", family: "unix" gradle version ------------------------------------------------------------ Gradle 4.0.1 ------------------------------------------------------------ Build time: 2017-07-07 14:02:41 UTC Revision: 38e5dc0f772daecca1d2681885d3d85414eb6826 Groovy: 2.4.11 Ant: Apache Ant(TM) version 1.9.6 compiled on June 29 2015 JVM: 1.8.0_151 (Oracle Corporation 25.151-b12) OS: Linux 4.4.0-98-generic amd64 lein version Leiningen 2.8.1 on Java 1.8.0_151 Java HotSpot(TM) 64-Bit Server VM Pre-installed Node.js versions v4.8.6 v6.12.0 v6.12.1 v8.9 v8.9.1 phpenv versions system 5.6 * 5.6.32 (set by /home/travis/.phpenv/version) 7.0 7.0.25 7.1 7.1.11 hhvm hhvm-stable composer --version Composer version 1.5.2 2017-09-11 16:59:25 Pre-installed Ruby versions ruby-2.2.7 ruby-2.3.4 ruby-2.4.1 travis_fold:end:system_info  travis_fold:start:docker_mtu docker stop/waiting docker start/running, process 3636 travis_fold:end:docker_mtu  travis_fold:start:git.checkout travis_time:start:1a4e338c $ git clone --depth=50 --branch=master https://github.com/[secure]/pylada_conda_pkg.git [secure]/pylada_conda_pkg Cloning into '[secure]/pylada_conda_pkg'... travis_time:end:1a4e338c:start=1557616997006319951,finish=1557616997536394442,duration=530074491 $ cd [secure]/pylada_conda_pkg $ git checkout -qf 26445ae48bf04c93259f56c1edd103f55e1a9d1d travis_fold:end:git.checkout  Setting environment variables from .travis.yml $ export OMP_NUM_THREADS=4 $ export CONDA_USER=[secure] $ export CONDA_UPLOAD_TOKEN=[secure] travis_fold:start:rvm travis_time:start:09b55192 $ rvm use default Using /home/travis/.rvm/gems/ruby-2.4.1 ** Updating RubyGems to the latest compatible version for security reasons. ** ** If you need an older version, you can downgrade with 'gem update --system OLD_VERSION'. ** travis_time:end:09b55192:start=1557616997556778646,finish=1557617001786359949,duration=4229581303 travis_fold:end:rvm  travis_fold:start:ruby.versions $ ruby --version ruby 2.4.1p111 (2017-03-22 revision 58053) [x86_64-linux] $ rvm --version rvm 1.29.3 (latest) by Michal Papis, Piotr Kuczynski, Wayne E. Seguin [https://rvm.io] $ bundle --version Bundler version 1.17.3 $ gem --version 3.0.3 travis_fold:end:ruby.versions  travis_fold:start:install.1 travis_time:start:12c32518 $ if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then bash -x macos_ci_setup.sh; fi travis_time:end:12c32518:start=1557617002236080964,finish=1557617002239553948,duration=3472984 travis_fold:end:install.1 travis_fold:start:install.2 travis_time:start:2a408d38 $ if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then wget https://repo.anaconda.com/miniconda/Miniconda3-latest-MacOSX-x86_64.sh -O miniconda.sh; else wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh; fi --2019-05-11 23:23:22-- https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh Resolving repo.continuum.io (repo.continuum.io)... 104.18.201.79, 104.18.200.79, 2606:4700::6812:c84f, ... Connecting to repo.continuum.io (repo.continuum.io)|104.18.201.79|:443... connected. 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.......... 8% 49.7M 1s 6150K .......... .......... .......... .......... .......... 9% 9.75M 1s 6200K .......... .......... .......... .......... .......... 9% 76.5M 1s 6250K .......... .......... .......... .......... .......... 9% 74.7M 1s 6300K .......... .......... .......... .......... .......... 9% 77.4M 1s 6350K .......... .......... .......... .......... .......... 9% 53.0M 1s 6400K .......... .......... .......... .......... .......... 9% 59.2M 1s 6450K .......... .......... .......... .......... .......... 9% 51.3M 1s 6500K .......... .......... .......... .......... .......... 9% 60.1M 1s 6550K .......... .......... .......... .......... .......... 9% 68.4M 1s 6600K .......... .......... .......... .......... .......... 9% 45.3M 1s 6650K .......... .......... .......... .......... .......... 9% 47.5M 1s 6700K .......... .......... .......... .......... .......... 9% 54.6M 1s 6750K .......... .......... .......... .......... .......... 9% 49.2M 1s 6800K .......... .......... .......... .......... .......... 9% 66.0M 1s 6850K .......... .......... .......... .......... .......... 10% 52.9M 1s 6900K .......... .......... .......... .......... .......... 10% 48.9M 1s 6950K .......... .......... .......... .......... .......... 10% 54.5M 1s 7000K .......... .......... .......... .......... .......... 10% 55.4M 1s 7050K .......... .......... .......... .......... .......... 10% 51.4M 1s 7100K .......... .......... .......... .......... .......... 10% 69.1M 1s 7150K .......... .......... .......... .......... .......... 10% 44.0M 1s 7200K .......... .......... .......... .......... .......... 10% 59.6M 1s 7250K .......... .......... .......... .......... .......... 10% 49.5M 1s 7300K .......... .......... .......... .......... .......... 10% 12.0M 1s 7350K .......... .......... .......... .......... .......... 10% 210M 1s 7400K .......... .......... .......... .......... .......... 10% 275M 1s 7450K .......... .......... .......... .......... .......... 10% 287M 1s 7500K .......... .......... .......... .......... .......... 10% 305M 1s 7550K .......... .......... .......... .......... .......... 11% 274M 1s 7600K .......... .......... .......... .......... .......... 11% 319M 1s 7650K .......... .......... .......... .......... .......... 11% 301M 1s 7700K .......... .......... .......... .......... .......... 11% 322M 1s 7750K .......... .......... .......... .......... .......... 11% 260M 1s 7800K .......... .......... .......... .......... .......... 11% 338M 1s 7850K .......... .......... .......... .......... .......... 11% 310M 1s 7900K .......... .......... .......... .......... .......... 11% 325M 1s 7950K .......... .......... .......... .......... .......... 11% 199M 1s 8000K .......... .......... .......... .......... .......... 11% 278M 1s 8050K .......... .......... .......... .......... .......... 11% 312M 1s 8100K .......... .......... .......... .......... .......... 11% 296M 1s 8150K .......... .......... .......... .......... .......... 11% 141M 1s 8200K .......... .......... .......... .......... .......... 12% 6.11M 1s 8250K .......... .......... .......... .......... .......... 12% 51.1M 1s 8300K .......... .......... .......... .......... .......... 12% 50.4M 1s 8350K .......... .......... .......... .......... .......... 12% 50.0M 1s 8400K .......... .......... .......... .......... .......... 12% 62.0M 1s 8450K .......... .......... .......... .......... .......... 12% 106M 1s 8500K .......... .......... .......... .......... .......... 12% 71.5M 1s 8550K .......... .......... .......... .......... .......... 12% 80.1M 1s 8600K .......... .......... .......... .......... .......... 12% 79.5M 1s 8650K .......... .......... .......... .......... .......... 12% 89.7M 1s 8700K .......... .......... .......... .......... .......... 12% 86.9M 1s 8750K .......... .......... .......... .......... .......... 12% 50.9M 1s 8800K .......... .......... .......... .......... .......... 12% 9.31M 1s 8850K .......... .......... .......... .......... .......... 12% 252M 1s 8900K .......... .......... .......... .......... .......... 13% 312M 1s 8950K .......... .......... .......... .......... .......... 13% 279M 1s 9000K .......... .......... .......... .......... .......... 13% 293M 1s 9050K .......... .......... .......... .......... .......... 13% 263M 1s 9100K .......... .......... .......... .......... .......... 13% 304M 1s 9150K .......... .......... .......... .......... .......... 13% 252M 1s 9200K .......... .......... .......... .......... .......... 13% 304M 1s 9250K .......... .......... .......... .......... .......... 13% 303M 1s 9300K .......... .......... .......... .......... .......... 13% 272M 1s 9350K .......... .......... .......... .......... .......... 13% 20.9M 1s 9400K .......... .......... .......... .......... .......... 13% 24.7M 1s 9450K .......... .......... .......... .......... .......... 13% 36.5M 1s 9500K .......... .......... .......... .......... .......... 13% 85.9M 1s 9550K .......... .......... .......... .......... .......... 13% 74.7M 1s 9600K .......... .......... .......... .......... .......... 14% 76.7M 1s 9650K .......... .......... .......... .......... .......... 14% 91.3M 1s 9700K .......... .......... .......... .......... .......... 14% 22.4M 1s 9750K .......... .......... .......... .......... .......... 14% 80.4M 1s 9800K .......... .......... .......... .......... .......... 14% 23.2M 1s 9850K .......... .......... .......... .......... .......... 14% 26.5M 1s 9900K .......... .......... .......... .......... .......... 14% 10.2M 1s 9950K .......... .......... .......... .......... .......... 14% 217M 1s 10000K .......... .......... .......... .......... .......... 14% 253M 1s 10050K .......... .......... .......... .......... .......... 14% 42.4M 1s 10100K .......... .......... .......... .......... .......... 14% 306M 1s 10150K .......... .......... .......... .......... .......... 14% 34.1M 1s 10200K .......... .......... .......... .......... .......... 14% 297M 1s 10250K .......... .......... .......... .......... .......... 14% 11.7M 1s 10300K .......... .......... .......... .......... .......... 15% 220M 1s 10350K .......... .......... .......... .......... .......... 15% 57.4M 1s 10400K .......... .......... .......... .......... .......... 15% 36.2M 1s 10450K .......... .......... .......... .......... .......... 15% 42.1M 1s 10500K .......... .......... .......... .......... .......... 15% 265M 1s 10550K .......... .......... .......... .......... .......... 15% 13.3M 1s 10600K .......... .......... .......... .......... .......... 15% 40.4M 1s 10650K .......... .......... .......... .......... .......... 15% 10.4M 1s 10700K .......... .......... .......... .......... .......... 15% 143M 1s 10750K .......... .......... .......... .......... .......... 15% 118M 1s 10800K .......... .......... .......... .......... .......... 15% 146M 1s 10850K .......... .......... 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16% 58.0M 1s 11550K .......... .......... .......... .......... .......... 16% 52.0M 1s 11600K .......... .......... .......... .......... .......... 16% 307M 1s 11650K .......... .......... .......... .......... .......... 17% 226M 1s 11700K .......... .......... .......... .......... .......... 17% 277M 1s 11750K .......... .......... .......... .......... .......... 17% 190M 1s 11800K .......... .......... .......... .......... .......... 17% 283M 1s 11850K .......... .......... .......... .......... .......... 17% 54.3M 1s 11900K .......... .......... .......... .......... .......... 17% 180M 1s 11950K .......... .......... .......... .......... .......... 17% 171M 1s 12000K .......... .......... .......... .......... .......... 17% 92.3M 1s 12050K .......... .......... .......... .......... .......... 17% 6.08M 1s 12100K .......... .......... .......... .......... .......... 17% 266M 1s 12150K .......... .......... .......... .......... .......... 17% 264M 1s 12200K .......... 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61.5M 1s 13550K .......... .......... .......... .......... .......... 19% 49.0M 1s 13600K .......... .......... .......... .......... .......... 19% 56.7M 1s 13650K .......... .......... .......... .......... .......... 19% 61.8M 1s 13700K .......... .......... .......... .......... .......... 20% 57.7M 1s 13750K .......... .......... .......... .......... .......... 20% 46.5M 1s 13800K .......... .......... .......... .......... .......... 20% 56.6M 1s 13850K .......... .......... .......... .......... .......... 20% 52.2M 1s 13900K .......... .......... .......... .......... .......... 20% 61.8M 1s 13950K .......... .......... .......... .......... .......... 20% 84.1M 1s 14000K .......... .......... .......... .......... .......... 20% 322M 1s 14050K .......... .......... .......... .......... .......... 20% 32.5M 1s 14100K .......... .......... .......... .......... .......... 20% 53.6M 1s 14150K .......... .......... .......... .......... .......... 20% 8.66M 1s 14200K .......... 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.......... 21% 199M 1s 14900K .......... .......... .......... .......... .......... 21% 295M 1s 14950K .......... .......... .......... .......... .......... 21% 179M 1s 15000K .......... .......... .......... .......... .......... 21% 37.3M 1s 15050K .......... .......... .......... .......... .......... 21% 80.0M 1s 15100K .......... .......... .......... .......... .......... 22% 50.3M 1s 15150K .......... .......... .......... .......... .......... 22% 27.1M 1s 15200K .......... .......... .......... .......... .......... 22% 6.07M 1s 15250K .......... .......... .......... .......... .......... 22% 62.5M 1s 15300K .......... .......... .......... .......... .......... 22% 37.6M 1s 15350K .......... .......... .......... .......... .......... 22% 45.6M 1s 15400K .......... .......... .......... .......... .......... 22% 16.2M 1s 15450K .......... .......... .......... .......... .......... 22% 289M 1s 15500K .......... .......... .......... .......... .......... 22% 21.2M 1s 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172M 1s 16900K .......... .......... .......... .......... .......... 24% 167M 1s 16950K .......... .......... .......... .......... .......... 24% 177M 1s 17000K .......... .......... .......... .......... .......... 24% 147M 1s 17050K .......... .......... .......... .......... .......... 24% 189M 1s 17100K .......... .......... .......... .......... .......... 24% 144M 1s 17150K .......... .......... .......... .......... .......... 25% 124M 1s 17200K .......... .......... .......... .......... .......... 25% 11.4M 1s 17250K .......... .......... .......... .......... .......... 25% 188M 1s 17300K .......... .......... .......... .......... .......... 25% 187M 1s 17350K .......... .......... .......... .......... .......... 25% 44.4M 1s 17400K .......... .......... .......... .......... .......... 25% 25.5M 1s 17450K .......... .......... .......... .......... .......... 25% 5.50M 1s 17500K .......... .......... .......... .......... .......... 25% 48.1M 1s 17550K .......... 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1s 18900K .......... .......... .......... .......... .......... 27% 48.7M 1s 18950K .......... .......... .......... .......... .......... 27% 50.1M 1s 19000K .......... .......... .......... .......... .......... 27% 53.4M 1s 19050K .......... .......... .......... .......... .......... 27% 54.1M 1s 19100K .......... .......... .......... .......... .......... 27% 49.4M 1s 19150K .......... .......... .......... .......... .......... 27% 45.4M 1s 19200K .......... .......... .......... .......... .......... 28% 47.2M 1s 19250K .......... .......... .......... .......... .......... 28% 51.0M 1s 19300K .......... .......... .......... .......... .......... 28% 56.9M 1s 19350K .......... .......... .......... .......... .......... 28% 57.9M 1s 19400K .......... .......... .......... .......... .......... 28% 51.7M 1s 19450K .......... .......... .......... .......... .......... 28% 13.0M 1s 19500K .......... .......... .......... .......... .......... 28% 54.6M 1s 19550K .......... .......... .......... .......... .......... 28% 300M 1s 19600K .......... .......... .......... .......... .......... 28% 302M 1s 19650K .......... .......... .......... .......... .......... 28% 321M 1s 19700K .......... .......... .......... .......... .......... 28% 435M 1s 19750K .......... .......... .......... .......... .......... 28% 20.5M 1s 19800K .......... .......... .......... .......... .......... 28% 19.9M 1s 19850K .......... .......... .......... .......... .......... 28% 211M 1s 19900K .......... .......... .......... .......... .......... 29% 351M 1s 19950K .......... .......... .......... .......... .......... 29% 22.1M 1s 20000K .......... .......... .......... .......... .......... 29% 58.1M 1s 20050K .......... .......... .......... .......... .......... 29% 17.9M 1s 20100K .......... .......... .......... .......... .......... 29% 215M 1s 20150K .......... .......... .......... .......... .......... 29% 21.1M 1s 20200K .......... .......... .......... .......... .......... 29% 67.0M 1s 20250K .......... .......... .......... .......... .......... 29% 22.1M 1s 20300K .......... .......... .......... .......... .......... 29% 144M 1s 20350K .......... .......... .......... .......... .......... 29% 152M 1s 20400K .......... .......... .......... .......... .......... 29% 196M 1s 20450K .......... .......... .......... .......... .......... 29% 179M 1s 20500K .......... .......... .......... .......... .......... 29% 99.1M 1s 20550K .......... .......... .......... .......... .......... 29% 18.4M 1s 20600K .......... .......... .......... .......... .......... 30% 288M 1s 20650K .......... .......... .......... .......... .......... 30% 288M 1s 20700K .......... .......... .......... .......... .......... 30% 306M 1s 20750K .......... .......... .......... .......... .......... 30% 93.4M 1s 20800K .......... .......... .......... .......... .......... 30% 314M 1s 20850K .......... .......... .......... .......... .......... 30% 27.8M 1s 20900K .......... .......... .......... .......... .......... 30% 62.3M 1s 20950K .......... .......... .......... .......... .......... 30% 274M 1s 21000K .......... .......... .......... .......... .......... 30% 159M 1s 21050K .......... .......... .......... .......... .......... 30% 44.8M 1s 21100K .......... .......... .......... .......... .......... 30% 52.7M 1s 21150K .......... .......... .......... .......... .......... 30% 34.6M 1s 21200K .......... .......... .......... .......... .......... 30% 26.6M 1s 21250K .......... .......... .......... .......... .......... 31% 157M 1s 21300K .......... .......... .......... .......... .......... 31% 184M 1s 21350K .......... .......... .......... .......... .......... 31% 164M 1s 21400K .......... .......... .......... .......... .......... 31% 9.04M 1s 21450K .......... .......... .......... .......... .......... 31% 10.6M 1s 21500K .......... .......... .......... .......... .......... 31% 179M 1s 21550K .......... .......... 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9.60M 1s 22250K .......... .......... .......... .......... .......... 32% 250M 1s 22300K .......... .......... .......... .......... .......... 32% 14.2M 1s 22350K .......... .......... .......... .......... .......... 32% 82.1M 1s 22400K .......... .......... .......... .......... .......... 32% 132M 1s 22450K .......... .......... .......... .......... .......... 32% 80.5M 1s 22500K .......... .......... .......... .......... .......... 32% 148M 1s 22550K .......... .......... .......... .......... .......... 32% 135M 1s 22600K .......... .......... .......... .......... .......... 32% 147M 1s 22650K .......... .......... .......... .......... .......... 33% 150M 1s 22700K .......... .......... .......... .......... .......... 33% 164M 1s 22750K .......... .......... .......... .......... .......... 33% 164M 1s 22800K .......... .......... .......... .......... .......... 33% 202M 1s 22850K .......... .......... .......... .......... .......... 33% 216M 1s 22900K .......... 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1s 25600K .......... .......... .......... .......... .......... 37% 2.57M 1s 25650K .......... .......... .......... .......... .......... 37% 107M 1s 25700K .......... .......... .......... .......... .......... 37% 149M 1s 25750K .......... .......... .......... .......... .......... 37% 114M 1s 25800K .......... .......... .......... .......... .......... 37% 158M 1s 25850K .......... .......... .......... .......... .......... 37% 160M 1s 25900K .......... .......... .......... .......... .......... 37% 168M 1s 25950K .......... .......... .......... .......... .......... 37% 164M 1s 26000K .......... .......... .......... .......... .......... 37% 199M 1s 26050K .......... .......... .......... .......... .......... 37% 183M 1s 26100K .......... .......... .......... .......... .......... 38% 182M 1s 26150K .......... .......... .......... .......... .......... 38% 204M 1s 26200K .......... .......... .......... .......... .......... 38% 191M 1s 26250K .......... .......... 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50300K .......... .......... .......... .......... .......... 73% 22.7M 0s 50350K .......... .......... .......... .......... .......... 73% 21.2M 0s 50400K .......... .......... .......... .......... .......... 73% 14.1M 0s 50450K .......... .......... .......... .......... .......... 73% 16.1M 0s 50500K .......... .......... .......... .......... .......... 73% 21.6M 0s 50550K .......... .......... .......... .......... .......... 73% 14.2M 0s 50600K .......... .......... .......... .......... .......... 73% 21.6M 0s 50650K .......... .......... .......... .......... .......... 73% 41.7M 0s 50700K .......... .......... .......... .......... .......... 73% 64.1M 0s 50750K .......... .......... .......... .......... .......... 73% 65.0M 0s 50800K .......... .......... .......... .......... .......... 74% 15.6M 0s 50850K .......... .......... .......... .......... .......... 74% 163M 0s 50900K .......... .......... .......... .......... .......... 74% 21.6M 0s 50950K .......... .......... .......... .......... .......... 74% 146M 0s 51000K .......... .......... .......... .......... .......... 74% 169M 0s 51050K .......... .......... .......... .......... .......... 74% 26.1M 0s 51100K .......... .......... .......... .......... .......... 74% 33.5M 0s 51150K .......... .......... .......... .......... .......... 74% 59.9M 0s 51200K .......... .......... .......... .......... .......... 74% 52.8M 0s 51250K .......... .......... .......... .......... .......... 74% 62.8M 0s 51300K .......... .......... .......... .......... .......... 74% 56.5M 0s 51350K .......... .......... .......... .......... .......... 74% 31.5M 0s 51400K .......... .......... .......... .......... .......... 74% 76.4M 0s 51450K .......... .......... .......... .......... .......... 74% 38.0M 0s 51500K .......... .......... .......... .......... .......... 75% 59.3M 0s 51550K .......... .......... .......... .......... .......... 75% 191M 0s 51600K .......... .......... .......... .......... .......... 75% 201M 0s 51650K .......... .......... .......... .......... .......... 75% 17.0M 0s 51700K .......... .......... .......... .......... .......... 75% 56.6M 0s 51750K .......... .......... .......... .......... .......... 75% 41.4M 0s 51800K .......... .......... .......... .......... .......... 75% 77.8M 0s 51850K .......... .......... .......... .......... .......... 75% 33.9M 0s 51900K .......... .......... .......... .......... .......... 75% 55.2M 0s 51950K .......... .......... .......... .......... .......... 75% 189M 0s 52000K .......... .......... .......... .......... .......... 75% 365M 0s 52050K .......... .......... .......... .......... .......... 75% 336M 0s 52100K .......... .......... .......... .......... .......... 75% 254M 0s 52150K .......... .......... .......... .......... .......... 75% 299M 0s 52200K .......... .......... .......... .......... .......... 76% 352M 0s 52250K .......... .......... .......... .......... .......... 76% 362M 0s 52300K .......... .......... .......... .......... .......... 76% 297M 0s 52350K .......... .......... .......... .......... .......... 76% 289M 0s 52400K .......... .......... .......... .......... .......... 76% 317M 0s 52450K .......... .......... .......... .......... .......... 76% 68.8M 0s 52500K .......... .......... .......... .......... .......... 76% 34.9M 0s 52550K .......... .......... .......... .......... .......... 76% 15.9M 0s 52600K .......... .......... .......... .......... .......... 76% 279M 0s 52650K .......... .......... .......... .......... .......... 76% 399M 0s 52700K .......... .......... .......... .......... .......... 76% 29.8M 0s 52750K .......... .......... .......... .......... .......... 76% 261M 0s 52800K .......... .......... .......... .......... .......... 76% 7.38M 0s 52850K .......... .......... .......... .......... .......... 77% 46.7M 0s 52900K .......... .......... .......... .......... .......... 77% 51.3M 0s 52950K .......... .......... .......... .......... .......... 77% 49.3M 0s 53000K .......... .......... .......... .......... .......... 77% 56.5M 0s 53050K .......... .......... .......... .......... .......... 77% 73.5M 0s 53100K .......... .......... .......... .......... .......... 77% 71.7M 0s 53150K .......... .......... .......... .......... .......... 77% 47.5M 0s 53200K .......... .......... .......... .......... .......... 77% 109M 0s 53250K .......... .......... .......... .......... .......... 77% 40.8M 0s 53300K .......... .......... .......... .......... .......... 77% 50.2M 0s 53350K .......... .......... .......... .......... .......... 77% 137M 0s 53400K .......... .......... .......... .......... .......... 77% 54.6M 0s 53450K .......... .......... .......... .......... .......... 77% 53.5M 0s 53500K .......... .......... .......... .......... .......... 77% 12.4M 0s 53550K .......... .......... .......... .......... .......... 78% 2.74M 0s 53600K .......... .......... .......... .......... .......... 78% 51.9M 0s 53650K .......... .......... .......... .......... .......... 78% 33.1M 0s 53700K .......... .......... .......... .......... .......... 78% 61.5M 0s 53750K .......... .......... .......... .......... .......... 78% 59.6M 0s 53800K .......... .......... .......... .......... .......... 78% 57.6M 0s 53850K .......... .......... .......... .......... .......... 78% 63.0M 0s 53900K .......... .......... .......... .......... .......... 78% 73.4M 0s 53950K .......... .......... .......... .......... .......... 78% 57.5M 0s 54000K .......... .......... .......... .......... .......... 78% 73.8M 0s 54050K .......... .......... .......... .......... .......... 78% 67.2M 0s 54100K .......... .......... .......... .......... .......... 78% 64.8M 0s 54150K .......... .......... .......... .......... .......... 78% 55.9M 0s 54200K .......... .......... .......... .......... .......... 78% 75.7M 0s 54250K .......... .......... .......... .......... .......... 79% 89.8M 0s 54300K .......... .......... .......... .......... .......... 79% 60.0M 0s 54350K .......... .......... .......... .......... .......... 79% 64.2M 0s 54400K .......... .......... .......... .......... .......... 79% 60.0M 0s 54450K .......... .......... .......... .......... .......... 79% 65.3M 0s 54500K .......... .......... .......... .......... .......... 79% 69.0M 0s 54550K .......... .......... .......... .......... .......... 79% 65.9M 0s 54600K .......... .......... .......... .......... .......... 79% 63.3M 0s 54650K .......... .......... .......... .......... .......... 79% 66.3M 0s 54700K .......... .......... .......... .......... .......... 79% 76.2M 0s 54750K .......... .......... .......... .......... .......... 79% 72.6M 0s 54800K .......... .......... .......... .......... .......... 79% 66.3M 0s 54850K .......... .......... .......... .......... .......... 79% 68.8M 0s 54900K .......... .......... .......... .......... .......... 79% 65.6M 0s 54950K .......... .......... .......... .......... .......... 80% 52.6M 0s 55000K .......... .......... .......... .......... .......... 80% 8.41M 0s 55050K .......... .......... .......... .......... .......... 80% 65.8M 0s 55100K .......... .......... .......... .......... .......... 80% 66.8M 0s 55150K .......... .......... .......... .......... .......... 80% 54.4M 0s 55200K .......... .......... .......... .......... .......... 80% 88.0M 0s 55250K .......... .......... .......... .......... .......... 80% 49.1M 0s 55300K .......... .......... .......... .......... .......... 80% 66.3M 0s 55350K .......... .......... .......... .......... .......... 80% 52.3M 0s 55400K .......... .......... .......... .......... .......... 80% 69.2M 0s 55450K .......... .......... .......... .......... .......... 80% 82.8M 0s 55500K .......... .......... .......... .......... .......... 80% 58.5M 0s 55550K .......... .......... .......... .......... .......... 80% 65.6M 0s 55600K .......... .......... .......... .......... .......... 81% 57.5M 0s 55650K .......... .......... .......... .......... .......... 81% 96.1M 0s 55700K .......... .......... .......... .......... .......... 81% 50.7M 0s 55750K .......... .......... .......... .......... .......... 81% 53.4M 0s 55800K .......... .......... .......... .......... .......... 81% 65.6M 0s 55850K .......... .......... .......... .......... .......... 81% 65.7M 0s 55900K .......... .......... .......... .......... .......... 81% 71.6M 0s 55950K .......... .......... .......... .......... .......... 81% 53.7M 0s 56000K .......... .......... .......... .......... .......... 81% 64.2M 0s 56050K .......... .......... .......... .......... .......... 81% 67.0M 0s 56100K .......... .......... .......... .......... .......... 81% 54.5M 0s 56150K .......... .......... .......... .......... .......... 81% 47.0M 0s 56200K .......... .......... .......... .......... .......... 81% 70.9M 0s 56250K .......... .......... .......... .......... .......... 81% 57.6M 0s 56300K .......... .......... .......... .......... .......... 82% 10.2M 0s 56350K .......... .......... .......... .......... .......... 82% 39.1M 0s 56400K .......... .......... .......... .......... .......... 82% 67.7M 0s 56450K .......... .......... .......... .......... .......... 82% 303M 0s 56500K .......... .......... .......... .......... .......... 82% 304M 0s 56550K .......... .......... .......... .......... .......... 82% 34.7M 0s 56600K .......... .......... .......... .......... .......... 82% 32.7M 0s 56650K .......... .......... .......... .......... .......... 82% 58.1M 0s 56700K .......... .......... .......... .......... .......... 82% 63.9M 0s 56750K .......... .......... .......... .......... .......... 82% 41.3M 0s 56800K .......... .......... .......... .......... .......... 82% 101M 0s 56850K .......... .......... .......... .......... .......... 82% 46.1M 0s 56900K .......... .......... .......... .......... .......... 82% 67.7M 0s 56950K .......... 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61.1M 0s 58300K .......... .......... .......... .......... .......... 84% 71.1M 0s 58350K .......... .......... .......... .......... .......... 85% 43.5M 0s 58400K .......... .......... .......... .......... .......... 85% 65.4M 0s 58450K .......... .......... .......... .......... .......... 85% 43.1M 0s 58500K .......... .......... .......... .......... .......... 85% 62.0M 0s 58550K .......... .......... .......... .......... .......... 85% 9.70M 0s 58600K .......... .......... .......... .......... .......... 85% 279M 0s 58650K .......... .......... .......... .......... .......... 85% 263M 0s 58700K .......... .......... .......... .......... .......... 85% 236M 0s 58750K .......... .......... .......... .......... .......... 85% 197M 0s 58800K .......... .......... .......... .......... .......... 85% 253M 0s 58850K .......... .......... .......... .......... .......... 85% 250M 0s 58900K .......... .......... .......... .......... .......... 85% 285M 0s 58950K .......... 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Python 3.7.3 installing: ca-certificates-2019.1.23-0 ... installing: libgcc-ng-8.2.0-hdf63c60_1 ... installing: libstdcxx-ng-8.2.0-hdf63c60_1 ... installing: libffi-3.2.1-hd88cf55_4 ... installing: ncurses-6.1-he6710b0_1 ... installing: openssl-1.1.1b-h7b6447c_1 ... installing: xz-5.2.4-h14c3975_4 ... installing: yaml-0.1.7-had09818_2 ... installing: zlib-1.2.11-h7b6447c_3 ... installing: libedit-3.1.20181209-hc058e9b_0 ... installing: readline-7.0-h7b6447c_5 ... installing: tk-8.6.8-hbc83047_0 ... installing: sqlite-3.27.2-h7b6447c_0 ... installing: asn1crypto-0.24.0-py37_0 ... installing: certifi-2019.3.9-py37_0 ... installing: chardet-3.0.4-py37_1 ... installing: idna-2.8-py37_0 ... installing: pycosat-0.6.3-py37h14c3975_0 ... installing: pycparser-2.19-py37_0 ... installing: pysocks-1.6.8-py37_0 ... installing: ruamel_yaml-0.15.46-py37h14c3975_0 ... installing: six-1.12.0-py37_0 ... installing: cffi-1.12.2-py37h2e261b9_1 ... installing: setuptools-41.0.0-py37_0 ... installing: cryptography-2.6.1-py37h1ba5d50_0 ... installing: wheel-0.33.1-py37_0 ... installing: pip-19.0.3-py37_0 ... installing: pyopenssl-19.0.0-py37_0 ... installing: urllib3-1.24.1-py37_0 ... installing: requests-2.21.0-py37_0 ... installing: conda-4.6.14-py37_0 ... installation finished. travis_time:end:0a2fefd6:start=1557617003973608901,finish=1557617016330109701,duration=12356500800 travis_fold:end:install.3 travis_fold:start:install.4 travis_time:start:16968759 $ rm miniconda.sh travis_time:end:16968759:start=1557617016336716246,finish=1557617016352525992,duration=15809746 travis_fold:end:install.4 travis_fold:start:install.5 travis_time:start:00024de0 $ export PATH="$HOME/miniconda/bin:$PATH" travis_time:end:00024de0:start=1557617016358675248,finish=1557617016362161965,duration=3486717 travis_fold:end:install.5 travis_fold:start:install.6 travis_time:start:0763201e $ hash -r travis_time:end:0763201e:start=1557617016369013710,finish=1557617016373696684,duration=4682974 travis_fold:end:install.6 travis_fold:start:install.7 travis_time:start:09efe740 $ conda config --set always_yes yes --set changeps1 no travis_time:end:09efe740:start=1557617016379210284,finish=1557617016521360265,duration=142149981 travis_fold:end:install.7 travis_fold:start:install.8 travis_time:start:05769c0c $ conda update -q conda Collecting package metadata: ...working... done Solving environment: ...working... done # All requested packages already installed. travis_time:end:05769c0c:start=1557617016527948552,finish=1557617021474980232,duration=4947031680 travis_fold:end:install.8 travis_time:start:073cb19e $ echo "Building" Building travis_time:end:073cb19e:start=1557617021481434414,finish=1557617021484654645,duration=3220231 The command "echo "Building"" exited with 0. travis_time:start:05029c77 $ conda install conda-build anaconda-client conda-verify Collecting package metadata: ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /home/travis/miniconda added / updated specs: - anaconda-client - conda-build - conda-verify The following packages will be downloaded: package | build ---------------------------|----------------- anaconda-client-1.7.2 | py37_0 140 KB attrs-19.1.0 | py37_1 56 KB beautifulsoup4-4.7.1 | py37_1 143 KB bzip2-1.0.6 | h14c3975_5 414 KB click-7.0 | py37_0 118 KB clyent-1.2.2 | py37_1 18 KB conda-build-3.17.8 | py37_0 505 KB conda-verify-3.1.1 | py37_0 33 KB decorator-4.4.0 | py37_1 18 KB filelock-3.0.10 | py37_0 13 KB future-0.17.1 | py37_0 699 KB glob2-0.6 | py37_1 17 KB icu-58.2 | h9c2bf20_1 22.5 MB ipython_genutils-0.2.0 | py37_0 39 KB jinja2-2.10.1 | py37_0 188 KB jsonschema-3.0.1 | py37_0 88 KB jupyter_core-4.4.0 | py37_0 63 KB libarchive-3.3.3 | h5d8350f_5 1.5 MB liblief-0.9.0 | h7725739_2 4.4 MB libxml2-2.9.9 | he19cac6_0 2.0 MB lz4-c-1.8.1.2 | h14c3975_0 158 KB lzo-2.10 | h49e0be7_2 313 KB markupsafe-1.1.1 | py37h7b6447c_0 29 KB nbformat-4.4.0 | py37_0 141 KB patchelf-0.9 | he6710b0_3 71 KB pkginfo-1.5.0.1 | py37_0 43 KB psutil-5.6.2 | py37h7b6447c_0 326 KB py-lief-0.9.0 | py37h7725739_2 1.5 MB pyrsistent-0.14.11 | py37h7b6447c_0 90 KB python-dateutil-2.8.0 | py37_0 281 KB python-libarchive-c-2.8 | py37_6 20 KB pytz-2019.1 | py_0 236 KB pyyaml-5.1 | py37h7b6447c_0 188 KB soupsieve-1.8 | py37_0 104 KB tqdm-4.31.1 | py37_1 69 KB traitlets-4.3.2 | py37_0 133 KB zstd-1.3.7 | h0b5b093_0 887 KB ------------------------------------------------------------ Total: 37.4 MB The following NEW packages will be INSTALLED: anaconda-client pkgs/main/linux-64::anaconda-client-1.7.2-py37_0 attrs pkgs/main/linux-64::attrs-19.1.0-py37_1 beautifulsoup4 pkgs/main/linux-64::beautifulsoup4-4.7.1-py37_1 bzip2 pkgs/main/linux-64::bzip2-1.0.6-h14c3975_5 click pkgs/main/linux-64::click-7.0-py37_0 clyent pkgs/main/linux-64::clyent-1.2.2-py37_1 conda-build pkgs/main/linux-64::conda-build-3.17.8-py37_0 conda-verify pkgs/main/linux-64::conda-verify-3.1.1-py37_0 decorator pkgs/main/linux-64::decorator-4.4.0-py37_1 filelock pkgs/main/linux-64::filelock-3.0.10-py37_0 future pkgs/main/linux-64::future-0.17.1-py37_0 glob2 pkgs/main/linux-64::glob2-0.6-py37_1 icu pkgs/main/linux-64::icu-58.2-h9c2bf20_1 ipython_genutils pkgs/main/linux-64::ipython_genutils-0.2.0-py37_0 jinja2 pkgs/main/linux-64::jinja2-2.10.1-py37_0 jsonschema pkgs/main/linux-64::jsonschema-3.0.1-py37_0 jupyter_core pkgs/main/linux-64::jupyter_core-4.4.0-py37_0 libarchive pkgs/main/linux-64::libarchive-3.3.3-h5d8350f_5 liblief pkgs/main/linux-64::liblief-0.9.0-h7725739_2 libxml2 pkgs/main/linux-64::libxml2-2.9.9-he19cac6_0 lz4-c pkgs/main/linux-64::lz4-c-1.8.1.2-h14c3975_0 lzo pkgs/main/linux-64::lzo-2.10-h49e0be7_2 markupsafe pkgs/main/linux-64::markupsafe-1.1.1-py37h7b6447c_0 nbformat pkgs/main/linux-64::nbformat-4.4.0-py37_0 patchelf pkgs/main/linux-64::patchelf-0.9-he6710b0_3 pkginfo pkgs/main/linux-64::pkginfo-1.5.0.1-py37_0 psutil pkgs/main/linux-64::psutil-5.6.2-py37h7b6447c_0 py-lief pkgs/main/linux-64::py-lief-0.9.0-py37h7725739_2 pyrsistent pkgs/main/linux-64::pyrsistent-0.14.11-py37h7b6447c_0 python-dateutil pkgs/main/linux-64::python-dateutil-2.8.0-py37_0 python-libarchive~ pkgs/main/linux-64::python-libarchive-c-2.8-py37_6 pytz pkgs/main/noarch::pytz-2019.1-py_0 pyyaml pkgs/main/linux-64::pyyaml-5.1-py37h7b6447c_0 soupsieve pkgs/main/linux-64::soupsieve-1.8-py37_0 tqdm pkgs/main/linux-64::tqdm-4.31.1-py37_1 traitlets pkgs/main/linux-64::traitlets-4.3.2-py37_0 zstd pkgs/main/linux-64::zstd-1.3.7-h0b5b093_0 Downloading and Extracting Packages decorator-4.4.0 | 18 KB | | 0% decorator-4.4.0 | 18 KB | ######5 | 66% decorator-4.4.0 | 18 KB | ########## | 100% icu-58.2 | 22.5 MB | | 0% icu-58.2 | 22.5 MB | 8 | 9% icu-58.2 | 22.5 MB | ##9 | 30% icu-58.2 | 22.5 MB | ####3 | 44% icu-58.2 | 22.5 MB | #####8 | 58% icu-58.2 | 22.5 MB | #######1 | 72% icu-58.2 | 22.5 MB | ########3 | 84% icu-58.2 | 22.5 MB | #########2 | 92% icu-58.2 | 22.5 MB | #########8 | 98% icu-58.2 | 22.5 MB | ########## | 100% libxml2-2.9.9 | 2.0 MB | | 0% libxml2-2.9.9 | 2.0 MB | #######8 | 78% libxml2-2.9.9 | 2.0 MB | ########## | 100% pyrsistent-0.14.11 | 90 KB | | 0% pyrsistent-0.14.11 | 90 KB | ########## | 100% py-lief-0.9.0 | 1.5 MB | | 0% py-lief-0.9.0 | 1.5 MB | #######8 | 79% py-lief-0.9.0 | 1.5 MB | ########## | 100% libarchive-3.3.3 | 1.5 MB | | 0% libarchive-3.3.3 | 1.5 MB | ######## | 80% libarchive-3.3.3 | 1.5 MB | ########## | 100% python-libarchive-c- | 20 KB | | 0% python-libarchive-c- | 20 KB | ########## | 100% filelock-3.0.10 | 13 KB | | 0% filelock-3.0.10 | 13 KB | ########## | 100% ipython_genutils-0.2 | 39 KB | | 0% ipython_genutils-0.2 | 39 KB | ########## | 100% zstd-1.3.7 | 887 KB | | 0% zstd-1.3.7 | 887 KB | ########5 | 85% zstd-1.3.7 | 887 KB | ########## | 100% clyent-1.2.2 | 18 KB | | 0% clyent-1.2.2 | 18 KB | ########## | 100% psutil-5.6.2 | 326 KB | | 0% psutil-5.6.2 | 326 KB | ########## | 100% patchelf-0.9 | 71 KB | | 0% patchelf-0.9 | 71 KB | ########## | 100% nbformat-4.4.0 | 141 KB | | 0% nbformat-4.4.0 | 141 KB | ########## | 100% future-0.17.1 | 699 KB | | 0% future-0.17.1 | 699 KB | ########5 | 86% future-0.17.1 | 699 KB | ########## | 100% markupsafe-1.1.1 | 29 KB | | 0% markupsafe-1.1.1 | 29 KB | ########## | 100% anaconda-client-1.7. | 140 KB | | 0% anaconda-client-1.7. | 140 KB | ########## | 100% liblief-0.9.0 | 4.4 MB | | 0% liblief-0.9.0 | 4.4 MB | #####7 | 58% liblief-0.9.0 | 4.4 MB | #######7 | 78% liblief-0.9.0 | 4.4 MB | #########5 | 96% liblief-0.9.0 | 4.4 MB | ########## | 100% lzo-2.10 | 313 KB | | 0% lzo-2.10 | 313 KB | ########## | 100% bzip2-1.0.6 | 414 KB | | 0% bzip2-1.0.6 | 414 KB | ########## | 100% tqdm-4.31.1 | 69 KB | | 0% tqdm-4.31.1 | 69 KB | ########## | 100% conda-build-3.17.8 | 505 KB | | 0% conda-build-3.17.8 | 505 KB | #########4 | 95% conda-build-3.17.8 | 505 KB | ########## | 100% pkginfo-1.5.0.1 | 43 KB | | 0% pkginfo-1.5.0.1 | 43 KB | ########## | 100% soupsieve-1.8 | 104 KB | | 0% soupsieve-1.8 | 104 KB | ########## | 100% jupyter_core-4.4.0 | 63 KB | | 0% jupyter_core-4.4.0 | 63 KB | ########## | 100% click-7.0 | 118 KB | | 0% click-7.0 | 118 KB | ########## | 100% jinja2-2.10.1 | 188 KB | | 0% jinja2-2.10.1 | 188 KB | ########## | 100% attrs-19.1.0 | 56 KB | | 0% attrs-19.1.0 | 56 KB | ########## | 100% pytz-2019.1 | 236 KB | | 0% pytz-2019.1 | 236 KB | ########## | 100% jsonschema-3.0.1 | 88 KB | | 0% jsonschema-3.0.1 | 88 KB | ########## | 100% beautifulsoup4-4.7.1 | 143 KB | | 0% beautifulsoup4-4.7.1 | 143 KB | ########## | 100% conda-verify-3.1.1 | 33 KB | | 0% conda-verify-3.1.1 | 33 KB | ########## | 100% python-dateutil-2.8. | 281 KB | | 0% python-dateutil-2.8. | 281 KB | ########## | 100% traitlets-4.3.2 | 133 KB | | 0% traitlets-4.3.2 | 133 KB | ########## | 100% glob2-0.6 | 17 KB | | 0% glob2-0.6 | 17 KB | ########## | 100% lz4-c-1.8.1.2 | 158 KB | | 0% lz4-c-1.8.1.2 | 158 KB | ########## | 100% pyyaml-5.1 | 188 KB | | 0% pyyaml-5.1 | 188 KB | ########## | 100% Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done travis_time:end:05029c77:start=1557617021491320535,finish=1557617042146666523,duration=20655345988 The command "conda install conda-build anaconda-client conda-verify" exited with 0. travis_time:start:1365ca3e $ conda config --add channels conda-forge travis_time:end:1365ca3e:start=1557617042153007843,finish=1557617042287679612,duration=134671769 The command "conda config --add channels conda-forge" exited with 0. travis_time:start:2d06e53b $ conda config --add channels [secure] travis_time:end:2d06e53b:start=1557617042293496365,finish=1557617042428944613,duration=135448248 The command "conda config --add channels [secure]" exited with 0. travis_time:start:103a4250 $ if [[ "$TRAVIS_PULL_REQUEST" != "false" ]]; then bash -x ./conda_build.sh; else bash -x ./conda_upload.sh; fi +conda config --set anaconda_upload yes +conda-build --token [secure] --user [secure] . No numpy version specified in conda_build_config.yaml. Falling back to default numpy value of 1.11 WARNING:conda_build.metadata:No numpy version specified in conda_build_config.yaml. Falling back to default numpy value of 1.11 Cloning into bare repository '/home/travis/miniconda/conda-bld/git_cache/github.com/pylada/pylada-light.git'... Cloning into '/home/travis/miniconda/conda-bld/pylada_1557617043166/work'... done. Your branch is up to date with 'origin/master'. commit edc22942551ecd2a3612874114322e90f0b9643b Merge: 17f8939 6649645 Author: Mayeul d'Avezac <2745737+mdavezac@users.noreply.github.com> Date: Thu Jan 31 12:22:48 2019 +0000 Merge pull request #45 from pylada/felixfixto44 Python 2 is still alive! v1.0-124-gedc2294 On branch master Your branch is up to date with 'origin/master'. nothing to commit, working tree clean checkout: 'HEAD' ==> git log -n1 <== ==> git describe --tags --dirty <== ==> git status <== Adding in variants from internal_defaults INFO:conda_build.variants:Adding in variants from internal_defaults Attempting to finalize metadata for pylada INFO:conda_build.metadata:Attempting to finalize metadata for pylada Collecting package metadata: ...working... done Solving environment: ...working... done Collecting package metadata: ...working... done Solving environment: ...working... done BUILD START: ['pylada-1.0-h1c2f66e_124.tar.bz2'] Collecting package metadata: ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /home/travis/miniconda/conda-bld/pylada_1557617043166/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_plac The following NEW packages will be INSTALLED: libgcc-ng: 8.2.0-hdf63c60_1 libgfortran-ng: 7.3.0-hdf63c60_0 libstdcxx-ng: 8.2.0-hdf63c60_1 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Collecting package metadata: ...working... done Solving environment: ...working... done Collecting package metadata: ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /home/travis/miniconda/conda-bld/pylada_1557617043166/_build_env The following NEW packages will be INSTALLED: atomicwrites: 1.3.0-py_0 conda-forge attrs: 19.1.0-py_0 conda-forge backcall: 0.1.0-py_0 conda-forge binutils_impl_linux-64: 2.31.1-h6176602_1 binutils_linux-64: 2.31.1-h6176602_7 bleach: 3.1.0-py_0 conda-forge bzip2: 1.0.6-h14c3975_1002 conda-forge ca-certificates: 2019.3.9-hecc5488_0 conda-forge certifi: 2019.3.9-py36_0 conda-forge cmake: 3.14.3-hf94ab9c_0 conda-forge curl: 7.64.1-hf8cf82a_0 conda-forge cython: 0.29.7-py36he1b5a44_0 conda-forge dbus: 1.13.6-he372182_0 conda-forge decorator: 4.4.0-py_0 conda-forge defusedxml: 0.5.0-py_1 conda-forge eigen: 3.3.7-h6bb024c_1000 conda-forge entrypoints: 0.3-py36_1000 conda-forge expat: 2.2.5-hf484d3e_1002 conda-forge f90nml: 1.0.2-py36_1000 conda-forge fontconfig: 2.13.1-he4413a7_1000 conda-forge freetype: 2.10.0-he983fc9_0 conda-forge gcc_impl_linux-64: 7.3.0-habb00fd_1 conda-forge gcc_linux-64: 7.3.0-h553295d_7 conda-forge gettext: 0.19.8.1-hc5be6a0_1002 conda-forge gfortran_impl_linux-64: 7.3.0-hdf63c60_1 gfortran_linux-64: 7.3.0-h553295d_7 glib: 2.58.3-hf63aee3_1001 conda-forge glob2: 0.6-py_0 conda-forge gst-plugins-base: 1.14.4-hdf3bae2_1001 conda-forge gstreamer: 1.14.4-h66beb1c_1001 conda-forge gxx_impl_linux-64: 7.3.0-hdf63c60_1 conda-forge gxx_linux-64: 7.3.0-h553295d_7 conda-forge icu: 58.2-hf484d3e_1000 conda-forge ipykernel: 5.1.0-py36h24bf2e0_1002 conda-forge ipython: 7.5.0-py36h24bf2e0_0 conda-forge ipython_genutils: 0.2.0-py_1 conda-forge ipywidgets: 7.4.2-py_0 conda-forge jedi: 0.13.3-py36_0 conda-forge jinja2: 2.10.1-py_0 conda-forge jpeg: 9c-h14c3975_1001 conda-forge jsonschema: 3.0.1-py36_0 conda-forge jupyter: 1.0.0-py_2 conda-forge jupyter_client: 5.2.4-py_3 conda-forge jupyter_console: 6.0.0-py_0 conda-forge jupyter_core: 4.4.0-py_0 conda-forge krb5: 1.16.3-h05b26f9_1001 conda-forge libblas: 3.8.0-8_openblas conda-forge libcblas: 3.8.0-8_openblas conda-forge libcurl: 7.64.1-hda55be3_0 conda-forge libedit: 3.1.20170329-hf8c457e_1001 conda-forge libffi: 3.2.1-he1b5a44_1006 conda-forge libgcc-ng: 8.2.0-hdf63c60_1 libgfortran-ng: 7.3.0-hdf63c60_0 libiconv: 1.15-h516909a_1005 conda-forge liblapack: 3.8.0-8_openblas conda-forge libpng: 1.6.37-hed695b0_0 conda-forge libsodium: 1.0.16-h14c3975_1001 conda-forge libssh2: 1.8.2-h22169c7_2 conda-forge libstdcxx-ng: 8.2.0-hdf63c60_1 libuuid: 2.32.1-h14c3975_1000 conda-forge libuv: 1.28.0-h516909a_0 conda-forge libxcb: 1.13-h14c3975_1002 conda-forge libxml2: 2.9.9-h13577e0_0 conda-forge mako: 1.0.7-py_1 conda-forge markupsafe: 1.1.1-py36h14c3975_0 conda-forge mistune: 0.8.4-py36h14c3975_1000 conda-forge more-itertools: 4.3.0-py36_1000 conda-forge mpi: 1.0-openmpi conda-forge mpi4py: 3.0.1-py36hd955b32_0 conda-forge nbconvert: 5.5.0-py_0 conda-forge nbformat: 4.4.0-py_1 conda-forge ncurses: 6.1-hf484d3e_1002 conda-forge notebook: 5.7.8-py36_0 conda-forge numpy: 1.11.3-py36he5ce36f_1207 conda-forge openblas: 0.3.6-h6e990d7_1 conda-forge openmpi: 3.1.4-hc99cbb1_0 conda-forge openssl: 1.1.1b-h14c3975_1 conda-forge pandoc: 2.7.2-0 conda-forge pandocfilters: 1.4.2-py_1 conda-forge parse: 1.12.0-py_0 conda-forge parse_type: 0.4.2-py36_1000 conda-forge parso: 0.4.0-py_0 conda-forge pcre: 8.41-hf484d3e_1003 conda-forge pexpect: 4.7.0-py36_0 conda-forge pickleshare: 0.7.5-py36_1000 conda-forge pip: 19.1-py36_0 conda-forge pluggy: 0.11.0-py_0 conda-forge prometheus_client: 0.6.0-py_0 conda-forge prompt_toolkit: 2.0.9-py_0 conda-forge pthread-stubs: 0.4-h14c3975_1001 conda-forge ptyprocess: 0.6.0-py_1001 conda-forge py: 1.8.0-py_0 conda-forge pygments: 2.4.0-py_0 conda-forge pyqt: 5.9.2-py36hcca6a23_0 conda-forge pyrsistent: 0.15.1-py36h516909a_0 conda-forge pytest: 4.4.2-py36_0 conda-forge pytest-bdd: 3.1.0-py36_0 [secure] python: 3.6.7-h381d211_1004 conda-forge python-dateutil: 2.8.0-py_0 conda-forge pyzmq: 18.0.1-py36hc4ba49a_1 conda-forge qt: 5.9.7-h52cfd70_1 conda-forge qtconsole: 4.4.4-py_0 conda-forge quantities: 0.12.3-pyh24bf2e0_0 conda-forge readline: 7.0-hf8c457e_1001 conda-forge rhash: 1.3.6-h14c3975_1001 conda-forge scipy: 1.2.1-py36h09a28d5_1 conda-forge send2trash: 1.5.0-py_0 conda-forge setuptools: 41.0.1-py36_0 conda-forge sip: 4.19.8-py36hf484d3e_1000 conda-forge six: 1.12.0-py36_1000 conda-forge sqlite: 3.26.0-h67949de_1001 conda-forge terminado: 0.8.2-py36_0 conda-forge testpath: 0.4.2-py_1001 conda-forge tk: 8.6.9-h84994c4_1001 conda-forge tornado: 6.0.2-py36h516909a_0 conda-forge traitlets: 4.3.2-py36_1000 conda-forge wcwidth: 0.1.7-py_1 conda-forge webencodings: 0.5.1-py_1 conda-forge wheel: 0.33.4-py36_0 conda-forge widgetsnbextension: 3.4.2-py36_1000 conda-forge xorg-libxau: 1.0.9-h14c3975_0 conda-forge xorg-libxdmcp: 1.1.3-h516909a_0 conda-forge xz: 5.2.4-h14c3975_1001 conda-forge zeromq: 4.3.1-hf484d3e_1000 conda-forge zlib: 1.2.11-h14c3975_1004 conda-forge Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... b'Enabling notebook extension jupyter-js-widgets/extension...\n - Validating: \x1b[32mOK\x1b[0m\n' done CMake Warning (dev) at build/external/src/GreatCMakeCookOff/cmake/GreatCMakeCookOffConfig.cmake:2 (set): implicitly converting 'DOC' to 'STRING' type. Call Stack (most recent call first): cmake_modules/LookUp-GreatCMakeCookOff.cmake:49 (find_package) CMakeLists.txt:31 (include) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at build/external/src/GreatCMakeCookOff/cmake/GreatCMakeCookOffConfig.cmake:4 (set): implicitly converting 'DOC' to 'STRING' type. Call Stack (most recent call first): cmake_modules/LookUp-GreatCMakeCookOff.cmake:49 (find_package) CMakeLists.txt:31 (include) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at build/external/src/GreatCMakeCookOff/cmake/GreatCMakeCookOffConfig.cmake:6 (set): implicitly converting 'DOC' to 'STRING' type. Call Stack (most recent call first): cmake_modules/LookUp-GreatCMakeCookOff.cmake:49 (find_package) CMakeLists.txt:31 (include) This warning is for project developers. Use -Wno-dev to suppress it. source tree in: /home/travis/miniconda/conda-bld/pylada_1557617043166/work export PREFIX=/home/travis/miniconda/conda-bld/pylada_1557617043166/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_plac export BUILD_PREFIX=/home/travis/miniconda/conda-bld/pylada_1557617043166/_build_env export SRC_DIR=/home/travis/miniconda/conda-bld/pylada_1557617043166/work INFO: activate-binutils_linux-64.sh made the following environmental changes: +ADDR2LINE=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-addr2line +AR=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-ar +AS=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-as +CXXFILT=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-c++filt +ELFEDIT=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-elfedit +GPROF=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-gprof +HOST=x86_64-conda_cos6-linux-gnu +LD_GOLD=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-ld.gold +LD=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-ld +NM=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-nm +OBJCOPY=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-objcopy +OBJDUMP=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-objdump +RANLIB=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-ranlib +READELF=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-readelf +SIZE=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-size +STRINGS=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-strings +STRIP=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-strip INFO: activate-gcc_linux-64.sh made the following environmental changes: +CC=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-cc +CFLAGS=-march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I$PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/pylada-1.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix +CMAKE_PREFIX_PATH=:$PREFIX:$BUILD_PREFIX/x86_64-conda_cos6-linux-gnu/sysroot/usr +_CONDA_PYTHON_SYSCONFIGDATA_NAME=_sysconfigdata_x86_64_conda_cos6_linux_gnu +CPPFLAGS=-DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -I$PREFIX +CPP=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-cpp +DEBUG_CFLAGS=-march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-all -fno-plt -Og -g -Wall -Wextra -fvar-tracking-assignments -ffunction-sections -pipe -I$PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/pylada-1.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix +DEBUG_CPPFLAGS=-D_DEBUG -D_FORTIFY_SOURCE=2 -Og -I$PREFIX +GCC_AR=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-gcc-ar +GCC=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-gcc +GCC_NM=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-gcc-nm +GCC_RANLIB=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-gcc-ranlib +LDFLAGS=-Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,$PREFIX/lib -Wl,-rpath-link,$PREFIX/lib -L$PREFIX/lib INFO: activate-gfortran_linux-64.sh made the following environmental changes: +DEBUG_FFLAGS=-fopenmp -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I$PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/pylada-1.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -fopenmp -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-all -fno-plt -Og -g -Wall -Wextra -fcheck=all -fbacktrace -fimplicit-none -fvar-tracking-assignments -ffunction-sections -pipe +DEBUG_FORTRANFLAGS=-fopenmp -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I$PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/pylada-1.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -fopenmp -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-all -fno-plt -Og -g -Wall -Wextra -fcheck=all -fbacktrace -fimplicit-none -fvar-tracking-assignments -ffunction-sections -pipe +F77=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-gfortran +F90=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-gfortran +F95=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-f95 +FC=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-gfortran +FFLAGS=-fopenmp -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I$PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/pylada-1.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix +FORTRANFLAGS=-fopenmp -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I$PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/pylada-1.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix +GFORTRAN=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-gfortran INFO: activate-gxx_linux-64.sh made the following environmental changes: +CXXFLAGS=-fvisibility-inlines-hidden -std=c++17 -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I$PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/pylada-1.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix +CXX=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-c++ +DEBUG_CXXFLAGS=-fvisibility-inlines-hidden -std=c++17 -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-all -fno-plt -Og -g -Wall -Wextra -fvar-tracking-assignments -ffunction-sections -pipe -I$PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/pylada-1.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix +GXX=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-g++ -- The C compiler identification is GNU 7.3.0 -- The CXX compiler identification is GNU 7.3.0 -- The Fortran compiler identification is GNU 7.3.0 -- Check for working C compiler: $BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-cc -- Check for working C compiler: $BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: $BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-c++ -- Check for working CXX compiler: $BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check for working Fortran compiler: $BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-gfortran -- Check for working Fortran compiler: $BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-gfortran -- works -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Checking whether $BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-gfortran supports Fortran 90 -- Checking whether $BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-gfortran supports Fortran 90 -- yes -- [GreatCMakeCookOff] not found. Will attempt to clone it. -- Found Git: /usr/bin/git (found version "2.15.1") -- [GreatCMakeCookOff] downloaded to $SRC_DIR/build/external/src/GreatCMakeCookOff -- Found Eigen3 -- Found PythonInterp: $BUILD_PREFIX/bin/python (found version "3.6.7") -- Found pytest: $BUILD_PREFIX/lib/python3.6/site-packages (found version "4.4.2") -- Found nbconvert: $BUILD_PREFIX/lib/python3.6/site-packages/nbconvert (found version "5.5.0") -- Found nbformat: $BUILD_PREFIX/lib/python3.6/site-packages/nbformat (found version "4.4.0") -- Found pytest_bdd: $BUILD_PREFIX/lib/python3.6/site-packages/pytest_bdd (found version "3.1.0") -- Found mpi4py: $BUILD_PREFIX/lib/python3.6/site-packages/mpi4py (found version "3.0.1") -- Found IPython: $BUILD_PREFIX/lib/python3.6/site-packages/IPython (found version "7.5.0") -- Found numpy: $BUILD_PREFIX/lib/python3.6/site-packages/numpy (found version "1.11.3") -- Found quantities: $BUILD_PREFIX/lib/python3.6/site-packages/quantities (found version "0.12.3") -- Found f90nml: $BUILD_PREFIX/lib/python3.6/site-packages/f90nml-1.0.2-py3.6.egg/f90nml (found version "1.0.2") -- Found six: $BUILD_PREFIX/lib/python3.6/site-packages (found version "1.12.0") /home/travis/miniconda/conda-bld/pylada_1557617043166/_build_env/lib/python3.6/site-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /home/travis/miniconda/conda-bld/pylada_1557617043166/work/crystal/cutilities.pyx tree = Parsing.p_module(s, pxd, full_module_name) -- Found traitlets: $BUILD_PREFIX/lib/python3.6/site-packages/traitlets (found version "4.3.2") -- Found cython: $BUILD_PREFIX/lib/python3.6/site-packages (found version "0.29.7") -- Found NumpyLibrary: $BUILD_PREFIX/lib/python3.6/site-packages/numpy/core/include (found version "1.11.3") -- Python install path (PYTHON_PKG_DIR): $PREFIX/lib/python3.6/site-packages -- Configuring done -- Generating done -- Build files have been written to: $SRC_DIR/build $BUILD_PREFIX/bin/cmake -S$SRC_DIR -B$SRC_DIR/build --check-build-system CMakeFiles/Makefile.cmake 0 $BUILD_PREFIX/bin/cmake -E cmake_progress_start $SRC_DIR/build/CMakeFiles $SRC_DIR/build/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory `$SRC_DIR/build' make -f CMakeFiles/lookup_dependencies.dir/build.make CMakeFiles/lookup_dependencies.dir/depend make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build && $BUILD_PREFIX/bin/cmake -E cmake_depends "Unix Makefiles" $SRC_DIR $SRC_DIR $SRC_DIR/build $SRC_DIR/build $SRC_DIR/build/CMakeFiles/lookup_dependencies.dir/DependInfo.cmake --color= Dependee "$SRC_DIR/build/CMakeFiles/lookup_dependencies.dir/DependInfo.cmake" is newer than depender "$SRC_DIR/build/CMakeFiles/lookup_dependencies.dir/depend.internal". Dependee "$SRC_DIR/build/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "$SRC_DIR/build/CMakeFiles/lookup_dependencies.dir/depend.internal". Scanning dependencies of target lookup_dependencies make[2]: Leaving directory `$SRC_DIR/build' make -f CMakeFiles/lookup_dependencies.dir/build.make CMakeFiles/lookup_dependencies.dir/build make[2]: Entering directory `$SRC_DIR/build' make[2]: Nothing to be done for `CMakeFiles/lookup_dependencies.dir/build'. make[2]: Leaving directory `$SRC_DIR/build' [ 0%] Built target lookup_dependencies make -f errors/CMakeFiles/pylada_error.dir/build.make errors/CMakeFiles/pylada_error.dir/depend make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build && $BUILD_PREFIX/bin/cmake -E cmake_depends "Unix Makefiles" $SRC_DIR $SRC_DIR/errors $SRC_DIR/build $SRC_DIR/build/errors $SRC_DIR/build/errors/CMakeFiles/pylada_error.dir/DependInfo.cmake --color= Dependee "$SRC_DIR/build/errors/CMakeFiles/pylada_error.dir/DependInfo.cmake" is newer than depender "$SRC_DIR/build/errors/CMakeFiles/pylada_error.dir/depend.internal". Dependee "$SRC_DIR/build/errors/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "$SRC_DIR/build/errors/CMakeFiles/pylada_error.dir/depend.internal". Scanning dependencies of target pylada_error make[2]: Leaving directory `$SRC_DIR/build' make -f errors/CMakeFiles/pylada_error.dir/build.make errors/CMakeFiles/pylada_error.dir/build make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build/errors && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/errors/error.py $SRC_DIR/build/python_package/pylada/error.py make[2]: Leaving directory `$SRC_DIR/build' [ 0%] Built target pylada_error make -f crystal/CMakeFiles/cutilities.dir/build.make crystal/CMakeFiles/cutilities.dir/depend make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build && $BUILD_PREFIX/bin/cmake -E cmake_depends "Unix Makefiles" $SRC_DIR $SRC_DIR/crystal $SRC_DIR/build $SRC_DIR/build/crystal $SRC_DIR/build/crystal/CMakeFiles/cutilities.dir/DependInfo.cmake --color= Dependee "$SRC_DIR/build/crystal/CMakeFiles/cutilities.dir/DependInfo.cmake" is newer than depender "$SRC_DIR/build/crystal/CMakeFiles/cutilities.dir/depend.internal". Dependee "$SRC_DIR/build/crystal/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "$SRC_DIR/build/crystal/CMakeFiles/cutilities.dir/depend.internal". Scanning dependencies of target cutilities make[2]: Leaving directory `$SRC_DIR/build' make -f crystal/CMakeFiles/cutilities.dir/build.make crystal/CMakeFiles/cutilities.dir/build make[2]: Entering directory `$SRC_DIR/build' [ 2%] Building CXX object crystal/CMakeFiles/cutilities.dir/smith_normal_form.cc.o cd $SRC_DIR/build/crystal && $BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-c++ -I$SRC_DIR -I$SRC_DIR/build -I$BUILD_PREFIX/include/python3.6m -I$BUILD_PREFIX/lib/python3.6/site-packages/numpy/core/include -isystem $BUILD_PREFIX/include/eigen3 -fvisibility-inlines-hidden -std=c++11 -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I$PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/pylada-1.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -fPIC -std=gnu++11 -o CMakeFiles/cutilities.dir/smith_normal_form.cc.o -c $SRC_DIR/crystal/smith_normal_form.cc [ 5%] Building CXX object crystal/CMakeFiles/cutilities.dir/gruber.cc.o cd $SRC_DIR/build/crystal && $BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-c++ -I$SRC_DIR -I$SRC_DIR/build -I$BUILD_PREFIX/include/python3.6m -I$BUILD_PREFIX/lib/python3.6/site-packages/numpy/core/include -isystem $BUILD_PREFIX/include/eigen3 -fvisibility-inlines-hidden -std=c++11 -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I$PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/pylada-1.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -fPIC -std=gnu++11 -o CMakeFiles/cutilities.dir/gruber.cc.o -c $SRC_DIR/crystal/gruber.cc [ 8%] Building CXX object crystal/CMakeFiles/cutilities.dir/noopt.cc.o cd $SRC_DIR/build/crystal && $BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-c++ -I$SRC_DIR -I$SRC_DIR/build -I$BUILD_PREFIX/include/python3.6m -I$BUILD_PREFIX/lib/python3.6/site-packages/numpy/core/include -isystem $BUILD_PREFIX/include/eigen3 -fvisibility-inlines-hidden -std=c++11 -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I$PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/pylada-1.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -fPIC -std=gnu++11 -o CMakeFiles/cutilities.dir/noopt.cc.o -c $SRC_DIR/crystal/noopt.cc [ 11%] Linking CXX static library libcutilities.a cd $SRC_DIR/build/crystal && $BUILD_PREFIX/bin/cmake -P CMakeFiles/cutilities.dir/cmake_clean_target.cmake cd $SRC_DIR/build/crystal && $BUILD_PREFIX/bin/cmake -E cmake_link_script CMakeFiles/cutilities.dir/link.txt --verbose=1 /usr/bin/ar qc libcutilities.a CMakeFiles/cutilities.dir/smith_normal_form.cc.o CMakeFiles/cutilities.dir/gruber.cc.o CMakeFiles/cutilities.dir/noopt.cc.o /usr/bin/ranlib libcutilities.a make[2]: Leaving directory `$SRC_DIR/build' [ 11%] Built target cutilities make -f crystal/CMakeFiles/pylada.crystal.cutilities-cython.dir/build.make crystal/CMakeFiles/pylada.crystal.cutilities-cython.dir/depend make[2]: Entering directory `$SRC_DIR/build' [ 14%] Generating c/c++ source cutilities.pyx with cython () cd $SRC_DIR/crystal && $SRC_DIR/build/localpython.sh -m cython --cplus cutilities.pyx -o $SRC_DIR/build/crystal/cython_cutilities.cc -I$SRC_DIR -I$SRC_DIR/build -I$BUILD_PREFIX/include/eigen3 -I$BUILD_PREFIX/include/python3.6m -I$BUILD_PREFIX/lib/python3.6/site-packages/numpy/core/include -I$BUILD_PREFIX/include/python3.6m -I$BUILD_PREFIX/lib/python3.6/site-packages/numpy/core/include -I$BUILD_PREFIX/include/python3.6m -I$BUILD_PREFIX/lib/python3.6/site-packages/numpy/core/include -I$BUILD_PREFIX/include/python3.6m -I$BUILD_PREFIX/lib/python3.6/site-packages/numpy/core/include cd $SRC_DIR/build && $BUILD_PREFIX/bin/cmake -E cmake_depends "Unix Makefiles" $SRC_DIR $SRC_DIR/crystal $SRC_DIR/build $SRC_DIR/build/crystal $SRC_DIR/build/crystal/CMakeFiles/pylada.crystal.cutilities-cython.dir/DependInfo.cmake --color= Dependee "$SRC_DIR/build/crystal/CMakeFiles/pylada.crystal.cutilities-cython.dir/DependInfo.cmake" is newer than depender "$SRC_DIR/build/crystal/CMakeFiles/pylada.crystal.cutilities-cython.dir/depend.internal". Dependee "$SRC_DIR/build/crystal/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "$SRC_DIR/build/crystal/CMakeFiles/pylada.crystal.cutilities-cython.dir/depend.internal". Scanning dependencies of target pylada.crystal.cutilities-cython make[2]: Leaving directory `$SRC_DIR/build' In file included from /home/travis/miniconda/conda-bld/pylada_1557617043166/_build_env/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1777:0, from /home/travis/miniconda/conda-bld/pylada_1557617043166/_build_env/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /home/travis/miniconda/conda-bld/pylada_1557617043166/_build_env/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /home/travis/miniconda/conda-bld/pylada_1557617043166/work/build/crystal/cython_cutilities.cc:607: /home/travis/miniconda/conda-bld/pylada_1557617043166/_build_env/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ /home/travis/miniconda/conda-bld/pylada_1557617043166/_build_env/lib/python3.6/site-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /home/travis/miniconda/conda-bld/pylada_1557617043166/work/crystal/_map_sites.pyx tree = Parsing.p_module(s, pxd, full_module_name) /home/travis/miniconda/conda-bld/pylada_1557617043166/_build_env/lib/python3.6/site-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /home/travis/miniconda/conda-bld/pylada_1557617043166/work/crystal/_coordination_shells.pyx tree = Parsing.p_module(s, pxd, full_module_name) make -f crystal/CMakeFiles/pylada.crystal.cutilities-cython.dir/build.make crystal/CMakeFiles/pylada.crystal.cutilities-cython.dir/build make[2]: Entering directory `$SRC_DIR/build' [ 17%] Building CXX object crystal/CMakeFiles/pylada.crystal.cutilities-cython.dir/cython_cutilities.cc.o cd $SRC_DIR/build/crystal && $BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-c++ -Dpylada_crystal_cutilities_cython_EXPORTS -I$SRC_DIR -I$SRC_DIR/build -I$BUILD_PREFIX/include/python3.6m -I$BUILD_PREFIX/lib/python3.6/site-packages/numpy/core/include -isystem $BUILD_PREFIX/include/eigen3 -fvisibility-inlines-hidden -std=c++11 -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I$PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/pylada-1.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -fPIC -o CMakeFiles/pylada.crystal.cutilities-cython.dir/cython_cutilities.cc.o -c $SRC_DIR/build/crystal/cython_cutilities.cc [ 20%] Linking CXX shared module ../python_package/pylada/crystal/cutilities.so cd $SRC_DIR/build/crystal && $BUILD_PREFIX/bin/cmake -E cmake_link_script CMakeFiles/pylada.crystal.cutilities-cython.dir/link.txt --verbose=1 $BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-c++ -fPIC -fvisibility-inlines-hidden -std=c++11 -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I$PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/pylada-1.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,$PREFIX/lib -Wl,-rpath-link,$PREFIX/lib -L$PREFIX/lib -shared -o ../python_package/pylada/crystal/cutilities.so CMakeFiles/pylada.crystal.cutilities-cython.dir/cython_cutilities.cc.o libcutilities.a make[2]: Leaving directory `$SRC_DIR/build' [ 20%] Built target pylada.crystal.cutilities-cython make -f crystal/CMakeFiles/pylada.crystal._map_sites-cython.dir/build.make crystal/CMakeFiles/pylada.crystal._map_sites-cython.dir/depend make[2]: Entering directory `$SRC_DIR/build' [ 22%] Generating c/c++ source _map_sites.pyx with cython () cd $SRC_DIR/crystal && $SRC_DIR/build/localpython.sh -m cython --cplus _map_sites.pyx -o $SRC_DIR/build/crystal/cython__map_sites.cc -I$SRC_DIR -I$SRC_DIR/build -I$BUILD_PREFIX/include/eigen3 -I$BUILD_PREFIX/include/python3.6m -I$BUILD_PREFIX/lib/python3.6/site-packages/numpy/core/include cd $SRC_DIR/build && $BUILD_PREFIX/bin/cmake -E cmake_depends "Unix Makefiles" $SRC_DIR $SRC_DIR/crystal $SRC_DIR/build $SRC_DIR/build/crystal $SRC_DIR/build/crystal/CMakeFiles/pylada.crystal._map_sites-cython.dir/DependInfo.cmake --color= Dependee "$SRC_DIR/build/crystal/CMakeFiles/pylada.crystal._map_sites-cython.dir/DependInfo.cmake" is newer than depender "$SRC_DIR/build/crystal/CMakeFiles/pylada.crystal._map_sites-cython.dir/depend.internal". Dependee "$SRC_DIR/build/crystal/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "$SRC_DIR/build/crystal/CMakeFiles/pylada.crystal._map_sites-cython.dir/depend.internal". Scanning dependencies of target pylada.crystal._map_sites-cython make[2]: Leaving directory `$SRC_DIR/build' make -f crystal/CMakeFiles/pylada.crystal._map_sites-cython.dir/build.make crystal/CMakeFiles/pylada.crystal._map_sites-cython.dir/build make[2]: Entering directory `$SRC_DIR/build' [ 25%] Building CXX object crystal/CMakeFiles/pylada.crystal._map_sites-cython.dir/cython__map_sites.cc.o cd $SRC_DIR/build/crystal && $BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-c++ -Dpylada_crystal__map_sites_cython_EXPORTS -I$SRC_DIR -I$SRC_DIR/build -I$BUILD_PREFIX/include/python3.6m -I$BUILD_PREFIX/lib/python3.6/site-packages/numpy/core/include -isystem $BUILD_PREFIX/include/eigen3 -fvisibility-inlines-hidden -std=c++11 -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I$PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/pylada-1.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -fPIC -o CMakeFiles/pylada.crystal._map_sites-cython.dir/cython__map_sites.cc.o -c $SRC_DIR/build/crystal/cython__map_sites.cc [ 28%] Linking CXX shared module ../python_package/pylada/crystal/_map_sites.so cd $SRC_DIR/build/crystal && $BUILD_PREFIX/bin/cmake -E cmake_link_script CMakeFiles/pylada.crystal._map_sites-cython.dir/link.txt --verbose=1 $BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-c++ -fPIC -fvisibility-inlines-hidden -std=c++11 -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I$PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/pylada-1.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,$PREFIX/lib -Wl,-rpath-link,$PREFIX/lib -L$PREFIX/lib -shared -o ../python_package/pylada/crystal/_map_sites.so CMakeFiles/pylada.crystal._map_sites-cython.dir/cython__map_sites.cc.o make[2]: Leaving directory `$SRC_DIR/build' [ 28%] Built target pylada.crystal._map_sites-cython make -f crystal/CMakeFiles/pylada.crystal._coordination_shells-cython.dir/build.make crystal/CMakeFiles/pylada.crystal._coordination_shells-cython.dir/depend make[2]: Entering directory `$SRC_DIR/build' [ 31%] Generating c/c++ source _coordination_shells.pyx with cython () cd $SRC_DIR/crystal && $SRC_DIR/build/localpython.sh -m cython --cplus _coordination_shells.pyx -o $SRC_DIR/build/crystal/cython__coordination_shells.cc -I$SRC_DIR -I$SRC_DIR/build -I$BUILD_PREFIX/include/eigen3 cd $SRC_DIR/build && $BUILD_PREFIX/bin/cmake -E cmake_depends "Unix Makefiles" $SRC_DIR $SRC_DIR/crystal $SRC_DIR/build $SRC_DIR/build/crystal $SRC_DIR/build/crystal/CMakeFiles/pylada.crystal._coordination_shells-cython.dir/DependInfo.cmake --color= Dependee "$SRC_DIR/build/crystal/CMakeFiles/pylada.crystal._coordination_shells-cython.dir/DependInfo.cmake" is newer than depender "$SRC_DIR/build/crystal/CMakeFiles/pylada.crystal._coordination_shells-cython.dir/depend.internal". Dependee "$SRC_DIR/build/crystal/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "$SRC_DIR/build/crystal/CMakeFiles/pylada.crystal._coordination_shells-cython.dir/depend.internal". Scanning dependencies of target pylada.crystal._coordination_shells-cython make[2]: Leaving directory `$SRC_DIR/build' make -f crystal/CMakeFiles/pylada.crystal._coordination_shells-cython.dir/build.make crystal/CMakeFiles/pylada.crystal._coordination_shells-cython.dir/build make[2]: Entering directory `$SRC_DIR/build' [ 34%] Building CXX object crystal/CMakeFiles/pylada.crystal._coordination_shells-cython.dir/cython__coordination_shells.cc.o cd $SRC_DIR/build/crystal && $BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-c++ -Dpylada_crystal__coordination_shells_cython_EXPORTS -I$SRC_DIR -I$SRC_DIR/build -I$BUILD_PREFIX/include/python3.6m -I$BUILD_PREFIX/lib/python3.6/site-packages/numpy/core/include -isystem $BUILD_PREFIX/include/eigen3 -fvisibility-inlines-hidden -std=c++11 -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I$PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/pylada-1.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -fPIC -o CMakeFiles/pylada.crystal._coordination_shells-cython.dir/cython__coordination_shells.cc.o -c $SRC_DIR/build/crystal/cython__coordination_shells.cc [ 37%] Linking CXX shared module ../python_package/pylada/crystal/_coordination_shells.so cd $SRC_DIR/build/crystal && $BUILD_PREFIX/bin/cmake -E cmake_link_script CMakeFiles/pylada.crystal._coordination_shells-cython.dir/link.txt --verbose=1 $BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-c++ -fPIC -fvisibility-inlines-hidden -std=c++11 -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I$PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/pylada-1.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,$PREFIX/lib -Wl,-rpath-link,$PREFIX/lib -L$PREFIX/lib -shared -o ../python_package/pylada/crystal/_coordination_shells.so CMakeFiles/pylada.crystal._coordination_shells-cython.dir/cython__coordination_shells.cc.o /home/travis/miniconda/conda-bld/pylada_1557617043166/_build_env/lib/python3.6/site-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /home/travis/miniconda/conda-bld/pylada_1557617043166/work/crystal/_space_group.pyx tree = Parsing.p_module(s, pxd, full_module_name) In file included from /home/travis/miniconda/conda-bld/pylada_1557617043166/_build_env/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1777:0, from /home/travis/miniconda/conda-bld/pylada_1557617043166/_build_env/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /home/travis/miniconda/conda-bld/pylada_1557617043166/_build_env/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /home/travis/miniconda/conda-bld/pylada_1557617043166/work/build/crystal/cython__space_group.cc:607: /home/travis/miniconda/conda-bld/pylada_1557617043166/_build_env/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ /home/travis/miniconda/conda-bld/pylada_1557617043166/_build_env/lib/python3.6/site-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /home/travis/miniconda/conda-bld/pylada_1557617043166/work/crystal/_primitive.pyx tree = Parsing.p_module(s, pxd, full_module_name) make[2]: Leaving directory `$SRC_DIR/build' [ 37%] Built target pylada.crystal._coordination_shells-cython make -f crystal/CMakeFiles/pylada.crystal._space_group-cython.dir/build.make crystal/CMakeFiles/pylada.crystal._space_group-cython.dir/depend make[2]: Entering directory `$SRC_DIR/build' [ 40%] Generating c/c++ source _space_group.pyx with cython () cd $SRC_DIR/crystal && $SRC_DIR/build/localpython.sh -m cython --cplus _space_group.pyx -o $SRC_DIR/build/crystal/cython__space_group.cc -I$SRC_DIR -I$SRC_DIR/build -I$BUILD_PREFIX/include/eigen3 -I$BUILD_PREFIX/include/python3.6m -I$BUILD_PREFIX/lib/python3.6/site-packages/numpy/core/include -I$BUILD_PREFIX/include/python3.6m -I$BUILD_PREFIX/lib/python3.6/site-packages/numpy/core/include -I$BUILD_PREFIX/include/python3.6m -I$BUILD_PREFIX/lib/python3.6/site-packages/numpy/core/include cd $SRC_DIR/build && $BUILD_PREFIX/bin/cmake -E cmake_depends "Unix Makefiles" $SRC_DIR $SRC_DIR/crystal $SRC_DIR/build $SRC_DIR/build/crystal $SRC_DIR/build/crystal/CMakeFiles/pylada.crystal._space_group-cython.dir/DependInfo.cmake --color= Dependee "$SRC_DIR/build/crystal/CMakeFiles/pylada.crystal._space_group-cython.dir/DependInfo.cmake" is newer than depender "$SRC_DIR/build/crystal/CMakeFiles/pylada.crystal._space_group-cython.dir/depend.internal". Dependee "$SRC_DIR/build/crystal/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "$SRC_DIR/build/crystal/CMakeFiles/pylada.crystal._space_group-cython.dir/depend.internal". Scanning dependencies of target pylada.crystal._space_group-cython make[2]: Leaving directory `$SRC_DIR/build' make -f crystal/CMakeFiles/pylada.crystal._space_group-cython.dir/build.make crystal/CMakeFiles/pylada.crystal._space_group-cython.dir/build make[2]: Entering directory `$SRC_DIR/build' [ 42%] Building CXX object crystal/CMakeFiles/pylada.crystal._space_group-cython.dir/cython__space_group.cc.o cd $SRC_DIR/build/crystal && $BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-c++ -Dpylada_crystal__space_group_cython_EXPORTS -I$SRC_DIR -I$SRC_DIR/build -I$BUILD_PREFIX/include/python3.6m -I$BUILD_PREFIX/lib/python3.6/site-packages/numpy/core/include -isystem $BUILD_PREFIX/include/eigen3 -fvisibility-inlines-hidden -std=c++11 -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I$PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/pylada-1.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -fPIC -o CMakeFiles/pylada.crystal._space_group-cython.dir/cython__space_group.cc.o -c $SRC_DIR/build/crystal/cython__space_group.cc [ 45%] Linking CXX shared module ../python_package/pylada/crystal/_space_group.so cd $SRC_DIR/build/crystal && $BUILD_PREFIX/bin/cmake -E cmake_link_script CMakeFiles/pylada.crystal._space_group-cython.dir/link.txt --verbose=1 $BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-c++ -fPIC -fvisibility-inlines-hidden -std=c++11 -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I$PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/pylada-1.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,$PREFIX/lib -Wl,-rpath-link,$PREFIX/lib -L$PREFIX/lib -shared -o ../python_package/pylada/crystal/_space_group.so CMakeFiles/pylada.crystal._space_group-cython.dir/cython__space_group.cc.o make[2]: Leaving directory `$SRC_DIR/build' [ 45%] Built target pylada.crystal._space_group-cython make -f crystal/CMakeFiles/pylada.crystal._primitive-cython.dir/build.make crystal/CMakeFiles/pylada.crystal._primitive-cython.dir/depend make[2]: Entering directory `$SRC_DIR/build' [ 48%] Generating c/c++ source _primitive.pyx with cython () cd $SRC_DIR/crystal && $SRC_DIR/build/localpython.sh -m cython --cplus _primitive.pyx -o $SRC_DIR/build/crystal/cython__primitive.cc -I$SRC_DIR -I$SRC_DIR/build -I$BUILD_PREFIX/include/eigen3 -I$BUILD_PREFIX/include/python3.6m -I$BUILD_PREFIX/lib/python3.6/site-packages/numpy/core/include -I$BUILD_PREFIX/include/python3.6m -I$BUILD_PREFIX/lib/python3.6/site-packages/numpy/core/include cd $SRC_DIR/build && $BUILD_PREFIX/bin/cmake -E cmake_depends "Unix Makefiles" $SRC_DIR $SRC_DIR/crystal $SRC_DIR/build $SRC_DIR/build/crystal $SRC_DIR/build/crystal/CMakeFiles/pylada.crystal._primitive-cython.dir/DependInfo.cmake --color= Dependee "$SRC_DIR/build/crystal/CMakeFiles/pylada.crystal._primitive-cython.dir/DependInfo.cmake" is newer than depender "$SRC_DIR/build/crystal/CMakeFiles/pylada.crystal._primitive-cython.dir/depend.internal". Dependee "$SRC_DIR/build/crystal/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "$SRC_DIR/build/crystal/CMakeFiles/pylada.crystal._primitive-cython.dir/depend.internal". Scanning dependencies of target pylada.crystal._primitive-cython make[2]: Leaving directory `$SRC_DIR/build' make -f crystal/CMakeFiles/pylada.crystal._primitive-cython.dir/build.make crystal/CMakeFiles/pylada.crystal._primitive-cython.dir/build make[2]: Entering directory `$SRC_DIR/build' [ 51%] Building CXX object crystal/CMakeFiles/pylada.crystal._primitive-cython.dir/cython__primitive.cc.o cd $SRC_DIR/build/crystal && $BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-c++ -Dpylada_crystal__primitive_cython_EXPORTS -I$SRC_DIR -I$SRC_DIR/build -I$BUILD_PREFIX/include/python3.6m -I$BUILD_PREFIX/lib/python3.6/site-packages/numpy/core/include -isystem $BUILD_PREFIX/include/eigen3 -fvisibility-inlines-hidden -std=c++11 -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I$PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/pylada-1.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -fPIC -o CMakeFiles/pylada.crystal._primitive-cython.dir/cython__primitive.cc.o -c $SRC_DIR/build/crystal/cython__primitive.cc [ 54%] Linking CXX shared module ../python_package/pylada/crystal/_primitive.so cd $SRC_DIR/build/crystal && $BUILD_PREFIX/bin/cmake -E cmake_link_script CMakeFiles/pylada.crystal._primitive-cython.dir/link.txt --verbose=1 $BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-c++ -fPIC -fvisibility-inlines-hidden -std=c++11 -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I$PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/pylada-1.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,$PREFIX/lib -Wl,-rpath-link,$PREFIX/lib -L$PREFIX/lib -shared -o ../python_package/pylada/crystal/_primitive.so CMakeFiles/pylada.crystal._primitive-cython.dir/cython__primitive.cc.o make[2]: Leaving directory `$SRC_DIR/build' [ 54%] Built target pylada.crystal._primitive-cython make -f crystal/CMakeFiles/pylada.crystal.dir/build.make crystal/CMakeFiles/pylada.crystal.dir/depend make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build && $BUILD_PREFIX/bin/cmake -E cmake_depends "Unix Makefiles" $SRC_DIR $SRC_DIR/crystal $SRC_DIR/build $SRC_DIR/build/crystal $SRC_DIR/build/crystal/CMakeFiles/pylada.crystal.dir/DependInfo.cmake --color= Dependee "$SRC_DIR/build/crystal/CMakeFiles/pylada.crystal.dir/DependInfo.cmake" is newer than depender "$SRC_DIR/build/crystal/CMakeFiles/pylada.crystal.dir/depend.internal". Dependee "$SRC_DIR/build/crystal/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "$SRC_DIR/build/crystal/CMakeFiles/pylada.crystal.dir/depend.internal". Scanning dependencies of target pylada.crystal make[2]: Leaving directory `$SRC_DIR/build' make -f crystal/CMakeFiles/pylada.crystal.dir/build.make crystal/CMakeFiles/pylada.crystal.dir/build make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build/crystal && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/crystal/A2BX4.py $SRC_DIR/build/python_package/pylada/crystal/A2BX4.py cd $SRC_DIR/build/crystal && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/crystal/ABX.py $SRC_DIR/build/python_package/pylada/crystal/ABX.py /home/travis/miniconda/conda-bld/pylada_1557617043166/_build_env/lib/python3.6/site-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /home/travis/miniconda/conda-bld/pylada_1557617043166/work/crystal/defects/cutilities.pyx tree = Parsing.p_module(s, pxd, full_module_name) cd $SRC_DIR/build/crystal && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/crystal/__init__.py $SRC_DIR/build/python_package/pylada/crystal/__init__.py cd $SRC_DIR/build/crystal && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/crystal/atom.py $SRC_DIR/build/python_package/pylada/crystal/atom.py cd $SRC_DIR/build/crystal && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/crystal/binary.py $SRC_DIR/build/python_package/pylada/crystal/binary.py cd $SRC_DIR/build/crystal && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/crystal/bravais.py $SRC_DIR/build/python_package/pylada/crystal/bravais.py cd $SRC_DIR/build/crystal && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/crystal/hart_forcade.py $SRC_DIR/build/python_package/pylada/crystal/hart_forcade.py cd $SRC_DIR/build/crystal && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/crystal/iterator.py $SRC_DIR/build/python_package/pylada/crystal/iterator.py cd $SRC_DIR/build/crystal && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/crystal/make_surface.py $SRC_DIR/build/python_package/pylada/crystal/make_surface.py cd $SRC_DIR/build/crystal && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/crystal/read.py $SRC_DIR/build/python_package/pylada/crystal/read.py cd $SRC_DIR/build/crystal && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/crystal/readCif.py $SRC_DIR/build/python_package/pylada/crystal/readCif.py cd $SRC_DIR/build/crystal && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/crystal/structure.py $SRC_DIR/build/python_package/pylada/crystal/structure.py cd $SRC_DIR/build/crystal && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/crystal/utilities.py $SRC_DIR/build/python_package/pylada/crystal/utilities.py cd $SRC_DIR/build/crystal && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/crystal/write.py $SRC_DIR/build/python_package/pylada/crystal/write.py make[2]: Leaving directory `$SRC_DIR/build' [ 54%] Built target pylada.crystal make -f crystal/defects/CMakeFiles/third_order.dir/build.make crystal/defects/CMakeFiles/third_order.dir/depend make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build && $BUILD_PREFIX/bin/cmake -E cmake_depends "Unix Makefiles" $SRC_DIR $SRC_DIR/crystal/defects $SRC_DIR/build $SRC_DIR/build/crystal/defects $SRC_DIR/build/crystal/defects/CMakeFiles/third_order.dir/DependInfo.cmake --color= Dependee "$SRC_DIR/build/crystal/defects/CMakeFiles/third_order.dir/DependInfo.cmake" is newer than depender "$SRC_DIR/build/crystal/defects/CMakeFiles/third_order.dir/depend.internal". Dependee "$SRC_DIR/build/crystal/defects/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "$SRC_DIR/build/crystal/defects/CMakeFiles/third_order.dir/depend.internal". Scanning dependencies of target third_order make[2]: Leaving directory `$SRC_DIR/build' make -f crystal/defects/CMakeFiles/third_order.dir/build.make crystal/defects/CMakeFiles/third_order.dir/build make[2]: Entering directory `$SRC_DIR/build' [ 57%] Building CXX object crystal/defects/CMakeFiles/third_order.dir/third_order.cc.o cd $SRC_DIR/build/crystal/defects && $BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-c++ -I$SRC_DIR -I$SRC_DIR/build -I$BUILD_PREFIX/include/python3.6m -I$BUILD_PREFIX/lib/python3.6/site-packages/numpy/core/include -isystem $BUILD_PREFIX/include/eigen3 -fvisibility-inlines-hidden -std=c++11 -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I$PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/pylada-1.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -fPIC -o CMakeFiles/third_order.dir/third_order.cc.o -c $SRC_DIR/crystal/defects/third_order.cc [ 60%] Linking CXX static library libthird_order.a cd $SRC_DIR/build/crystal/defects && $BUILD_PREFIX/bin/cmake -P CMakeFiles/third_order.dir/cmake_clean_target.cmake cd $SRC_DIR/build/crystal/defects && $BUILD_PREFIX/bin/cmake -E cmake_link_script CMakeFiles/third_order.dir/link.txt --verbose=1 /usr/bin/ar qc libthird_order.a CMakeFiles/third_order.dir/third_order.cc.o /usr/bin/ranlib libthird_order.a make[2]: Leaving directory `$SRC_DIR/build' [ 60%] Built target third_order make -f crystal/defects/CMakeFiles/pylada.crystal.defects.cutilities-cython.dir/build.make crystal/defects/CMakeFiles/pylada.crystal.defects.cutilities-cython.dir/depend make[2]: Entering directory `$SRC_DIR/build' [ 62%] Generating c/c++ source cutilities.pyx with cython () cd $SRC_DIR/crystal/defects && $SRC_DIR/build/localpython.sh -m cython --cplus cutilities.pyx -o $SRC_DIR/build/crystal/defects/cython_cutilities.cc -I$SRC_DIR -I$SRC_DIR/build -I$BUILD_PREFIX/include/eigen3 -I$BUILD_PREFIX/include/python3.6m -I$BUILD_PREFIX/lib/python3.6/site-packages/numpy/core/include -I$BUILD_PREFIX/include/python3.6m -I$BUILD_PREFIX/lib/python3.6/site-packages/numpy/core/include -I$BUILD_PREFIX/include/python3.6m -I$BUILD_PREFIX/lib/python3.6/site-packages/numpy/core/include -I$BUILD_PREFIX/include/python3.6m -I$BUILD_PREFIX/lib/python3.6/site-packages/numpy/core/include -I$BUILD_PREFIX/include/python3.6m -I$BUILD_PREFIX/lib/python3.6/site-packages/numpy/core/include cd $SRC_DIR/build && $BUILD_PREFIX/bin/cmake -E cmake_depends "Unix Makefiles" $SRC_DIR $SRC_DIR/crystal/defects $SRC_DIR/build $SRC_DIR/build/crystal/defects $SRC_DIR/build/crystal/defects/CMakeFiles/pylada.crystal.defects.cutilities-cython.dir/DependInfo.cmake --color= Dependee "$SRC_DIR/build/crystal/defects/CMakeFiles/pylada.crystal.defects.cutilities-cython.dir/DependInfo.cmake" is newer than depender "$SRC_DIR/build/crystal/defects/CMakeFiles/pylada.crystal.defects.cutilities-cython.dir/depend.internal". Dependee "$SRC_DIR/build/crystal/defects/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "$SRC_DIR/build/crystal/defects/CMakeFiles/pylada.crystal.defects.cutilities-cython.dir/depend.internal". Scanning dependencies of target pylada.crystal.defects.cutilities-cython make[2]: Leaving directory `$SRC_DIR/build' make -f crystal/defects/CMakeFiles/pylada.crystal.defects.cutilities-cython.dir/build.make crystal/defects/CMakeFiles/pylada.crystal.defects.cutilities-cython.dir/build make[2]: Entering directory `$SRC_DIR/build' [ 65%] Building CXX object crystal/defects/CMakeFiles/pylada.crystal.defects.cutilities-cython.dir/cython_cutilities.cc.o cd $SRC_DIR/build/crystal/defects && $BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-c++ -Dpylada_crystal_defects_cutilities_cython_EXPORTS -I$SRC_DIR -I$SRC_DIR/build -I$BUILD_PREFIX/include/python3.6m -I$BUILD_PREFIX/lib/python3.6/site-packages/numpy/core/include -isystem $BUILD_PREFIX/include/eigen3 -fvisibility-inlines-hidden -std=c++11 -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I$PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/pylada-1.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -fPIC -o CMakeFiles/pylada.crystal.defects.cutilities-cython.dir/cython_cutilities.cc.o -c $SRC_DIR/build/crystal/defects/cython_cutilities.cc [ 68%] Linking CXX shared module ../../python_package/pylada/crystal/defects/cutilities.so cd $SRC_DIR/build/crystal/defects && $BUILD_PREFIX/bin/cmake -E cmake_link_script CMakeFiles/pylada.crystal.defects.cutilities-cython.dir/link.txt --verbose=1 $BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-c++ -fPIC -fvisibility-inlines-hidden -std=c++11 -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I$PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/pylada-1.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,$PREFIX/lib -Wl,-rpath-link,$PREFIX/lib -L$PREFIX/lib -shared -o ../../python_package/pylada/crystal/defects/cutilities.so CMakeFiles/pylada.crystal.defects.cutilities-cython.dir/cython_cutilities.cc.o libthird_order.a make[2]: Leaving directory `$SRC_DIR/build' [ 68%] Built target pylada.crystal.defects.cutilities-cython f951: Warning: Nonexistent include directory '/home/travis/miniconda/conda-bld/pylada_1557617043166/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_plac/include' [-Wmissing-include-dirs] make -f crystal/defects/CMakeFiles/pylada.crystal.defects.dir/build.make crystal/defects/CMakeFiles/pylada.crystal.defects.dir/depend make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build && $BUILD_PREFIX/bin/cmake -E cmake_depends "Unix Makefiles" $SRC_DIR $SRC_DIR/crystal/defects $SRC_DIR/build $SRC_DIR/build/crystal/defects $SRC_DIR/build/crystal/defects/CMakeFiles/pylada.crystal.defects.dir/DependInfo.cmake --color= Dependee "$SRC_DIR/build/crystal/defects/CMakeFiles/pylada.crystal.defects.dir/DependInfo.cmake" is newer than depender "$SRC_DIR/build/crystal/defects/CMakeFiles/pylada.crystal.defects.dir/depend.internal". Dependee "$SRC_DIR/build/crystal/defects/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "$SRC_DIR/build/crystal/defects/CMakeFiles/pylada.crystal.defects.dir/depend.internal". Scanning dependencies of target pylada.crystal.defects make[2]: Leaving directory `$SRC_DIR/build' make -f crystal/defects/CMakeFiles/pylada.crystal.defects.dir/build.make crystal/defects/CMakeFiles/pylada.crystal.defects.dir/build make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build/crystal/defects && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/crystal/defects/__init__.py $SRC_DIR/build/python_package/pylada/crystal/defects/__init__.py make[2]: Leaving directory `$SRC_DIR/build' [ 68%] Built target pylada.crystal.defects make -f crystal/tests/CMakeFiles/pylada.crystal.tests.dir/build.make crystal/tests/CMakeFiles/pylada.crystal.tests.dir/depend make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build && $BUILD_PREFIX/bin/cmake -E cmake_depends "Unix Makefiles" $SRC_DIR $SRC_DIR/crystal/tests $SRC_DIR/build $SRC_DIR/build/crystal/tests $SRC_DIR/build/crystal/tests/CMakeFiles/pylada.crystal.tests.dir/DependInfo.cmake --color= Dependee "$SRC_DIR/build/crystal/tests/CMakeFiles/pylada.crystal.tests.dir/DependInfo.cmake" is newer than depender "$SRC_DIR/build/crystal/tests/CMakeFiles/pylada.crystal.tests.dir/depend.internal". Dependee "$SRC_DIR/build/crystal/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "$SRC_DIR/build/crystal/tests/CMakeFiles/pylada.crystal.tests.dir/depend.internal". Scanning dependencies of target pylada.crystal.tests make[2]: Leaving directory `$SRC_DIR/build' make -f crystal/tests/CMakeFiles/pylada.crystal.tests.dir/build.make crystal/tests/CMakeFiles/pylada.crystal.tests.dir/build make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build/crystal/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/crystal/tests/test_atom.py $SRC_DIR/build/python_package/pylada/crystal/tests/test_atom.py cd $SRC_DIR/build/crystal/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/crystal/tests/test_cellinvariants.py $SRC_DIR/build/python_package/pylada/crystal/tests/test_cellinvariants.py cd $SRC_DIR/build/crystal/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/crystal/tests/test_coordination_shells.py $SRC_DIR/build/python_package/pylada/crystal/tests/test_coordination_shells.py cd $SRC_DIR/build/crystal/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/crystal/tests/test_cutilities.py $SRC_DIR/build/python_package/pylada/crystal/tests/test_cutilities.py cd $SRC_DIR/build/crystal/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/crystal/tests/test_hart-forcade.py $SRC_DIR/build/python_package/pylada/crystal/tests/test_hart-forcade.py cd $SRC_DIR/build/crystal/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/crystal/tests/test_map_sites.py $SRC_DIR/build/python_package/pylada/crystal/tests/test_map_sites.py cd $SRC_DIR/build/crystal/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/crystal/tests/test_neighbors.py $SRC_DIR/build/python_package/pylada/crystal/tests/test_neighbors.py cd $SRC_DIR/build/crystal/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/crystal/tests/test_primitive.py $SRC_DIR/build/python_package/pylada/crystal/tests/test_primitive.py cd $SRC_DIR/build/crystal/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/crystal/tests/test_space_group.py $SRC_DIR/build/python_package/pylada/crystal/tests/test_space_group.py cd $SRC_DIR/build/crystal/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/crystal/tests/test_splitconfigs.py $SRC_DIR/build/python_package/pylada/crystal/tests/test_splitconfigs.py cd $SRC_DIR/build/crystal/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/crystal/tests/test_structure.py $SRC_DIR/build/python_package/pylada/crystal/tests/test_structure.py cd $SRC_DIR/build/crystal/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/crystal/tests/test_supercell.py $SRC_DIR/build/python_package/pylada/crystal/tests/test_supercell.py cd $SRC_DIR/build/crystal/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/crystal/tests/test_third_order.py $SRC_DIR/build/python_package/pylada/crystal/tests/test_third_order.py cd $SRC_DIR/build/crystal/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/crystal/tests/test_utilities.py $SRC_DIR/build/python_package/pylada/crystal/tests/test_utilities.py cd $SRC_DIR/build/crystal/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/crystal/tests/test_which_site.py $SRC_DIR/build/python_package/pylada/crystal/tests/test_which_site.py cd $SRC_DIR/build/crystal/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/crystal/tests/test_write_gulp.py $SRC_DIR/build/python_package/pylada/crystal/tests/test_write_gulp.py make[2]: Leaving directory `$SRC_DIR/build' [ 68%] Built target pylada.crystal.tests make -f ewald/CMakeFiles/ewaldf90.dir/build.make ewald/CMakeFiles/ewaldf90.dir/depend make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build && $BUILD_PREFIX/bin/cmake -E cmake_depends "Unix Makefiles" $SRC_DIR $SRC_DIR/ewald $SRC_DIR/build $SRC_DIR/build/ewald $SRC_DIR/build/ewald/CMakeFiles/ewaldf90.dir/DependInfo.cmake --color= Dependee "$SRC_DIR/build/ewald/CMakeFiles/ewaldf90.dir/DependInfo.cmake" is newer than depender "$SRC_DIR/build/ewald/CMakeFiles/ewaldf90.dir/depend.internal". 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Scanning dependencies of target ewaldf90 make[2]: Leaving directory `$SRC_DIR/build' make -f ewald/CMakeFiles/ewaldf90.dir/build.make ewald/CMakeFiles/ewaldf90.dir/build make[2]: Entering directory `$SRC_DIR/build' [ 71%] Building Fortran object ewald/CMakeFiles/ewaldf90.dir/ep_com.f90.o cd $SRC_DIR/build/ewald && $BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-gfortran -I$SRC_DIR -I$SRC_DIR/build -I$BUILD_PREFIX/include/python3.6m -I$BUILD_PREFIX/lib/python3.6/site-packages/numpy/core/include -I$BUILD_PREFIX/include/eigen3 -fopenmp -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I$PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/pylada-1.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -fPIC -c $SRC_DIR/ewald/ep_com.f90 -o CMakeFiles/ewaldf90.dir/ep_com.f90.o $BUILD_PREFIX/bin/cmake -E cmake_copy_f90_mod ewald/ep_param.mod ewald/CMakeFiles/ewaldf90.dir/ep_param.mod.stamp GNU $BUILD_PREFIX/bin/cmake -E touch ewald/CMakeFiles/ewaldf90.dir/ep_com.f90.o.provides.build [ 74%] Building CXX object ewald/CMakeFiles/ewaldf90.dir/erfc.cc.o cd $SRC_DIR/build/ewald && $BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-c++ -I$SRC_DIR -I$SRC_DIR/build -I$BUILD_PREFIX/include/python3.6m -I$BUILD_PREFIX/lib/python3.6/site-packages/numpy/core/include -isystem $BUILD_PREFIX/include/eigen3 -fvisibility-inlines-hidden -std=c++11 -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I$PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/pylada-1.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -fPIC -std=gnu++11 -o CMakeFiles/ewaldf90.dir/erfc.cc.o -c $SRC_DIR/ewald/erfc.cc [ 77%] Building Fortran object ewald/CMakeFiles/ewaldf90.dir/ewaldf.f90.o cd $SRC_DIR/build/ewald && $BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-gfortran -I$SRC_DIR -I$SRC_DIR/build -I$BUILD_PREFIX/include/python3.6m -I$BUILD_PREFIX/lib/python3.6/site-packages/numpy/core/include -I$BUILD_PREFIX/include/eigen3 -fopenmp -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I$PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/pylada-1.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -fPIC -c $SRC_DIR/ewald/ewaldf.f90 -o CMakeFiles/ewaldf90.dir/ewaldf.f90.o f951: Warning: Nonexistent include directory '/home/travis/miniconda/conda-bld/pylada_1557617043166/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_plac/include' [-Wmissing-include-dirs] /home/travis/miniconda/conda-bld/pylada_1557617043166/_build_env/lib/python3.6/site-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /home/travis/miniconda/conda-bld/pylada_1557617043166/work/ewald/ewald.pyx tree = Parsing.p_module(s, pxd, full_module_name) [ 80%] Building CXX object ewald/CMakeFiles/ewaldf90.dir/ewald.cc.o cd $SRC_DIR/build/ewald && $BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-c++ -I$SRC_DIR -I$SRC_DIR/build -I$BUILD_PREFIX/include/python3.6m -I$BUILD_PREFIX/lib/python3.6/site-packages/numpy/core/include -isystem $BUILD_PREFIX/include/eigen3 -fvisibility-inlines-hidden -std=c++11 -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I$PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/pylada-1.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -fPIC -std=gnu++11 -o CMakeFiles/ewaldf90.dir/ewald.cc.o -c $SRC_DIR/ewald/ewald.cc [ 82%] Linking CXX static library libewaldf90.a cd $SRC_DIR/build/ewald && $BUILD_PREFIX/bin/cmake -P CMakeFiles/ewaldf90.dir/cmake_clean_target.cmake cd $SRC_DIR/build/ewald && $BUILD_PREFIX/bin/cmake -E cmake_link_script CMakeFiles/ewaldf90.dir/link.txt --verbose=1 /usr/bin/ar qc libewaldf90.a CMakeFiles/ewaldf90.dir/ep_com.f90.o CMakeFiles/ewaldf90.dir/erfc.cc.o CMakeFiles/ewaldf90.dir/ewaldf.f90.o CMakeFiles/ewaldf90.dir/ewald.cc.o /usr/bin/ranlib libewaldf90.a make[2]: Leaving directory `$SRC_DIR/build' [ 82%] Built target ewaldf90 make -f ewald/CMakeFiles/pylada.ewald-cython.dir/build.make ewald/CMakeFiles/pylada.ewald-cython.dir/depend make[2]: Entering directory `$SRC_DIR/build' [ 85%] Generating c/c++ source ewald.pyx with cython () cd $SRC_DIR/ewald && $SRC_DIR/build/localpython.sh -m cython --cplus ewald.pyx -o $SRC_DIR/build/ewald/cython_ewald.cc -I$SRC_DIR -I$SRC_DIR/build -I$BUILD_PREFIX/include/eigen3 cd $SRC_DIR/build && $BUILD_PREFIX/bin/cmake -E cmake_depends "Unix Makefiles" $SRC_DIR $SRC_DIR/ewald $SRC_DIR/build $SRC_DIR/build/ewald $SRC_DIR/build/ewald/CMakeFiles/pylada.ewald-cython.dir/DependInfo.cmake --color= Dependee "$SRC_DIR/build/ewald/CMakeFiles/pylada.ewald-cython.dir/DependInfo.cmake" is newer than depender "$SRC_DIR/build/ewald/CMakeFiles/pylada.ewald-cython.dir/depend.internal". 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Scanning dependencies of target pylada.ewald-cython make[2]: Leaving directory `$SRC_DIR/build' make -f ewald/CMakeFiles/pylada.ewald-cython.dir/build.make ewald/CMakeFiles/pylada.ewald-cython.dir/build make[2]: Entering directory `$SRC_DIR/build' [ 88%] Building CXX object ewald/CMakeFiles/pylada.ewald-cython.dir/cython_ewald.cc.o cd $SRC_DIR/build/ewald && $BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-c++ -Dpylada_ewald_cython_EXPORTS -I$SRC_DIR -I$SRC_DIR/build -I$BUILD_PREFIX/include/python3.6m -I$BUILD_PREFIX/lib/python3.6/site-packages/numpy/core/include -isystem $BUILD_PREFIX/include/eigen3 -fvisibility-inlines-hidden -std=c++11 -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I$PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/pylada-1.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -fPIC -o CMakeFiles/pylada.ewald-cython.dir/cython_ewald.cc.o -c $SRC_DIR/build/ewald/cython_ewald.cc [ 91%] Linking CXX shared module ../python_package/pylada/ewald.so cd $SRC_DIR/build/ewald && $BUILD_PREFIX/bin/cmake -E cmake_link_script CMakeFiles/pylada.ewald-cython.dir/link.txt --verbose=1 $BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-c++ -fPIC -fvisibility-inlines-hidden -std=c++11 -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I$PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/pylada-1.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,$PREFIX/lib -Wl,-rpath-link,$PREFIX/lib -L$PREFIX/lib -shared -o ../python_package/pylada/ewald.so CMakeFiles/pylada.ewald-cython.dir/cython_ewald.cc.o libewaldf90.a -lgfortran -lgomp -lquadmath -lpthread make[2]: Leaving directory `$SRC_DIR/build' [ 91%] Built target pylada.ewald-cython make -f python/CMakeFiles/pylada.dir/build.make python/CMakeFiles/pylada.dir/depend make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build && $BUILD_PREFIX/bin/cmake -E cmake_depends "Unix Makefiles" $SRC_DIR $SRC_DIR/python $SRC_DIR/build $SRC_DIR/build/python $SRC_DIR/build/python/CMakeFiles/pylada.dir/DependInfo.cmake --color= Dependee "$SRC_DIR/build/python/CMakeFiles/pylada.dir/DependInfo.cmake" is newer than depender "$SRC_DIR/build/python/CMakeFiles/pylada.dir/depend.internal". 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Dependee "$SRC_DIR/build/tools/input/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "$SRC_DIR/build/tools/input/CMakeFiles/pylada.tools.input.dir/depend.internal". Scanning dependencies of target pylada.tools.input make[2]: Leaving directory `$SRC_DIR/build' make -f tools/input/CMakeFiles/pylada.tools.input.dir/build.make tools/input/CMakeFiles/pylada.tools.input.dir/build make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build/tools/input && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/tools/input/__init__.py $SRC_DIR/build/python_package/pylada/tools/input/__init__.py cd $SRC_DIR/build/tools/input && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/tools/input/block.py $SRC_DIR/build/python_package/pylada/tools/input/block.py cd $SRC_DIR/build/tools/input && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/tools/input/keywords.py $SRC_DIR/build/python_package/pylada/tools/input/keywords.py cd $SRC_DIR/build/tools/input && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/tools/input/listblock.py $SRC_DIR/build/python_package/pylada/tools/input/listblock.py cd $SRC_DIR/build/tools/input && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/tools/input/tree.py $SRC_DIR/build/python_package/pylada/tools/input/tree.py make[2]: Leaving directory `$SRC_DIR/build' [ 91%] Built target pylada.tools.input make -f tools/input/tests/CMakeFiles/pylada.tools.input.tests.dir/build.make tools/input/tests/CMakeFiles/pylada.tools.input.tests.dir/depend make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build && $BUILD_PREFIX/bin/cmake -E cmake_depends "Unix Makefiles" $SRC_DIR $SRC_DIR/tools/input/tests $SRC_DIR/build $SRC_DIR/build/tools/input/tests $SRC_DIR/build/tools/input/tests/CMakeFiles/pylada.tools.input.tests.dir/DependInfo.cmake --color= Dependee "$SRC_DIR/build/tools/input/tests/CMakeFiles/pylada.tools.input.tests.dir/DependInfo.cmake" is newer than depender "$SRC_DIR/build/tools/input/tests/CMakeFiles/pylada.tools.input.tests.dir/depend.internal". Dependee "$SRC_DIR/build/tools/input/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "$SRC_DIR/build/tools/input/tests/CMakeFiles/pylada.tools.input.tests.dir/depend.internal". Scanning dependencies of target pylada.tools.input.tests make[2]: Leaving directory `$SRC_DIR/build' make -f tools/input/tests/CMakeFiles/pylada.tools.input.tests.dir/build.make tools/input/tests/CMakeFiles/pylada.tools.input.tests.dir/build make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build/tools/input/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/tools/input/tests/test_keywords.py $SRC_DIR/build/python_package/pylada/tools/input/tests/test_keywords.py cd $SRC_DIR/build/tools/input/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/tools/input/tests/test_listblock.py $SRC_DIR/build/python_package/pylada/tools/input/tests/test_listblock.py cd $SRC_DIR/build/tools/input/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/tools/input/tests/test_tree.py $SRC_DIR/build/python_package/pylada/tools/input/tests/test_tree.py make[2]: Leaving directory `$SRC_DIR/build' [ 91%] Built target pylada.tools.input.tests make -f tools/tests/CMakeFiles/pylada.tools.tests.dir/build.make tools/tests/CMakeFiles/pylada.tools.tests.dir/depend make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build && $BUILD_PREFIX/bin/cmake -E cmake_depends "Unix Makefiles" $SRC_DIR $SRC_DIR/tools/tests $SRC_DIR/build $SRC_DIR/build/tools/tests $SRC_DIR/build/tools/tests/CMakeFiles/pylada.tools.tests.dir/DependInfo.cmake --color= Dependee "$SRC_DIR/build/tools/tests/CMakeFiles/pylada.tools.tests.dir/DependInfo.cmake" is newer than depender "$SRC_DIR/build/tools/tests/CMakeFiles/pylada.tools.tests.dir/depend.internal". Dependee "$SRC_DIR/build/tools/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "$SRC_DIR/build/tools/tests/CMakeFiles/pylada.tools.tests.dir/depend.internal". Scanning dependencies of target pylada.tools.tests make[2]: Leaving directory `$SRC_DIR/build' make -f tools/tests/CMakeFiles/pylada.tools.tests.dir/build.make tools/tests/CMakeFiles/pylada.tools.tests.dir/build make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build/tools/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/tools/tests/dummy.py $SRC_DIR/build/python_package/pylada/tools/tests/dummy.py cd $SRC_DIR/build/tools/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/tools/tests/test_makeclass.py $SRC_DIR/build/python_package/pylada/tools/tests/test_makeclass.py make[2]: Leaving directory `$SRC_DIR/build' [ 91%] Built target pylada.tools.tests make -f ewald/tests/CMakeFiles/pylada.ewald.tests.dir/build.make ewald/tests/CMakeFiles/pylada.ewald.tests.dir/depend make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build && $BUILD_PREFIX/bin/cmake -E cmake_depends "Unix Makefiles" $SRC_DIR $SRC_DIR/ewald/tests $SRC_DIR/build $SRC_DIR/build/ewald/tests $SRC_DIR/build/ewald/tests/CMakeFiles/pylada.ewald.tests.dir/DependInfo.cmake --color= Dependee "$SRC_DIR/build/ewald/tests/CMakeFiles/pylada.ewald.tests.dir/DependInfo.cmake" is newer than depender "$SRC_DIR/build/ewald/tests/CMakeFiles/pylada.ewald.tests.dir/depend.internal". Dependee "$SRC_DIR/build/ewald/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "$SRC_DIR/build/ewald/tests/CMakeFiles/pylada.ewald.tests.dir/depend.internal". Scanning dependencies of target pylada.ewald.tests make[2]: Leaving directory `$SRC_DIR/build' make -f ewald/tests/CMakeFiles/pylada.ewald.tests.dir/build.make ewald/tests/CMakeFiles/pylada.ewald.tests.dir/build /home/travis/miniconda/conda-bld/pylada_1557617043166/_build_env/lib/python3.6/site-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /home/travis/miniconda/conda-bld/pylada_1557617043166/work/decorations/_cutilities.pyx tree = Parsing.p_module(s, pxd, full_module_name) In file included from /home/travis/miniconda/conda-bld/pylada_1557617043166/_build_env/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1777:0, from /home/travis/miniconda/conda-bld/pylada_1557617043166/_build_env/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /home/travis/miniconda/conda-bld/pylada_1557617043166/_build_env/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /home/travis/miniconda/conda-bld/pylada_1557617043166/work/build/decorations/cython__cutilities.cc:607: /home/travis/miniconda/conda-bld/pylada_1557617043166/_build_env/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build/ewald/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/ewald/tests/test_ewald.py $SRC_DIR/build/python_package/pylada/ewald/tests/test_ewald.py make[2]: Leaving directory `$SRC_DIR/build' [ 91%] Built target pylada.ewald.tests make -f decorations/CMakeFiles/pylada.decorations._cutilities-cython.dir/build.make decorations/CMakeFiles/pylada.decorations._cutilities-cython.dir/depend make[2]: Entering directory `$SRC_DIR/build' [ 94%] Generating c/c++ source _cutilities.pyx with cython () cd $SRC_DIR/decorations && $SRC_DIR/build/localpython.sh -m cython --cplus _cutilities.pyx -o $SRC_DIR/build/decorations/cython__cutilities.cc -I$SRC_DIR -I$SRC_DIR/build -I$BUILD_PREFIX/include/eigen3 cd $SRC_DIR/build && $BUILD_PREFIX/bin/cmake -E cmake_depends "Unix Makefiles" $SRC_DIR $SRC_DIR/decorations $SRC_DIR/build $SRC_DIR/build/decorations $SRC_DIR/build/decorations/CMakeFiles/pylada.decorations._cutilities-cython.dir/DependInfo.cmake --color= Dependee "$SRC_DIR/build/decorations/CMakeFiles/pylada.decorations._cutilities-cython.dir/DependInfo.cmake" is newer than depender "$SRC_DIR/build/decorations/CMakeFiles/pylada.decorations._cutilities-cython.dir/depend.internal". Dependee "$SRC_DIR/build/decorations/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "$SRC_DIR/build/decorations/CMakeFiles/pylada.decorations._cutilities-cython.dir/depend.internal". Scanning dependencies of target pylada.decorations._cutilities-cython make[2]: Leaving directory `$SRC_DIR/build' make -f decorations/CMakeFiles/pylada.decorations._cutilities-cython.dir/build.make decorations/CMakeFiles/pylada.decorations._cutilities-cython.dir/build make[2]: Entering directory `$SRC_DIR/build' [ 97%] Building CXX object decorations/CMakeFiles/pylada.decorations._cutilities-cython.dir/cython__cutilities.cc.o cd $SRC_DIR/build/decorations && $BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-c++ -Dpylada_decorations__cutilities_cython_EXPORTS -I$SRC_DIR -I$SRC_DIR/build -I$BUILD_PREFIX/include/python3.6m -I$BUILD_PREFIX/lib/python3.6/site-packages/numpy/core/include -isystem $BUILD_PREFIX/include/eigen3 -fvisibility-inlines-hidden -std=c++11 -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I$PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/pylada-1.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -fPIC -o CMakeFiles/pylada.decorations._cutilities-cython.dir/cython__cutilities.cc.o -c $SRC_DIR/build/decorations/cython__cutilities.cc [100%] Linking CXX shared module ../python_package/pylada/decorations/_cutilities.so cd $SRC_DIR/build/decorations && $BUILD_PREFIX/bin/cmake -E cmake_link_script CMakeFiles/pylada.decorations._cutilities-cython.dir/link.txt --verbose=1 $BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-c++ -fPIC -fvisibility-inlines-hidden -std=c++11 -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I$PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/pylada-1.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,$PREFIX/lib -Wl,-rpath-link,$PREFIX/lib -L$PREFIX/lib -shared -o ../python_package/pylada/decorations/_cutilities.so CMakeFiles/pylada.decorations._cutilities-cython.dir/cython__cutilities.cc.o make[2]: Leaving directory `$SRC_DIR/build' [100%] Built target pylada.decorations._cutilities-cython make -f decorations/CMakeFiles/pylada.decorations.dir/build.make decorations/CMakeFiles/pylada.decorations.dir/depend make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build && $BUILD_PREFIX/bin/cmake -E cmake_depends "Unix Makefiles" $SRC_DIR $SRC_DIR/decorations $SRC_DIR/build $SRC_DIR/build/decorations $SRC_DIR/build/decorations/CMakeFiles/pylada.decorations.dir/DependInfo.cmake --color= Dependee "$SRC_DIR/build/decorations/CMakeFiles/pylada.decorations.dir/DependInfo.cmake" is newer than depender "$SRC_DIR/build/decorations/CMakeFiles/pylada.decorations.dir/depend.internal". 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Scanning dependencies of target pylada.decorations make[2]: Leaving directory `$SRC_DIR/build' make -f decorations/CMakeFiles/pylada.decorations.dir/build.make decorations/CMakeFiles/pylada.decorations.dir/build make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build/decorations && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/decorations/__init__.py $SRC_DIR/build/python_package/pylada/decorations/__init__.py cd $SRC_DIR/build/decorations && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/decorations/transforms.py $SRC_DIR/build/python_package/pylada/decorations/transforms.py cd $SRC_DIR/build/decorations && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/decorations/defects.py $SRC_DIR/build/python_package/pylada/decorations/defects.py make[2]: Leaving directory `$SRC_DIR/build' [100%] Built target pylada.decorations make -f decorations/tests/CMakeFiles/pylada.decorations.tests.dir/build.make decorations/tests/CMakeFiles/pylada.decorations.tests.dir/depend make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build && $BUILD_PREFIX/bin/cmake -E cmake_depends "Unix Makefiles" $SRC_DIR $SRC_DIR/decorations/tests $SRC_DIR/build $SRC_DIR/build/decorations/tests $SRC_DIR/build/decorations/tests/CMakeFiles/pylada.decorations.tests.dir/DependInfo.cmake --color= Dependee "$SRC_DIR/build/decorations/tests/CMakeFiles/pylada.decorations.tests.dir/DependInfo.cmake" is newer than depender "$SRC_DIR/build/decorations/tests/CMakeFiles/pylada.decorations.tests.dir/depend.internal". 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Scanning dependencies of target pylada.decorations.tests make[2]: Leaving directory `$SRC_DIR/build' make -f decorations/tests/CMakeFiles/pylada.decorations.tests.dir/build.make decorations/tests/CMakeFiles/pylada.decorations.tests.dir/build make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build/decorations/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/decorations/tests/diamondsets.py $SRC_DIR/build/python_package/pylada/decorations/tests/diamondsets.py cd $SRC_DIR/build/decorations/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/decorations/tests/fccsets.py $SRC_DIR/build/python_package/pylada/decorations/tests/fccsets.py cd $SRC_DIR/build/decorations/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/decorations/tests/ternarysets.py $SRC_DIR/build/python_package/pylada/decorations/tests/ternarysets.py cd $SRC_DIR/build/decorations/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/decorations/tests/test_defects.py $SRC_DIR/build/python_package/pylada/decorations/tests/test_defects.py cd $SRC_DIR/build/decorations/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/decorations/tests/test_fciterator.py $SRC_DIR/build/python_package/pylada/decorations/tests/test_fciterator.py cd $SRC_DIR/build/decorations/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/decorations/tests/test_generator.py $SRC_DIR/build/python_package/pylada/decorations/tests/test_generator.py cd $SRC_DIR/build/decorations/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/decorations/tests/test_lexcompare.py $SRC_DIR/build/python_package/pylada/decorations/tests/test_lexcompare.py cd $SRC_DIR/build/decorations/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/decorations/tests/test_ndimiterator.py $SRC_DIR/build/python_package/pylada/decorations/tests/test_ndimiterator.py cd $SRC_DIR/build/decorations/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/decorations/tests/test_supercells.py $SRC_DIR/build/python_package/pylada/decorations/tests/test_supercells.py cd $SRC_DIR/build/decorations/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/decorations/tests/test_transform.py $SRC_DIR/build/python_package/pylada/decorations/tests/test_transform.py cd $SRC_DIR/build/decorations/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/decorations/tests/zincblendesets.py $SRC_DIR/build/python_package/pylada/decorations/tests/zincblendesets.py make[2]: Leaving directory `$SRC_DIR/build' [100%] Built target pylada.decorations.tests make -f config/CMakeFiles/pylada.config.dir/build.make config/CMakeFiles/pylada.config.dir/depend make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build && $BUILD_PREFIX/bin/cmake -E cmake_depends "Unix Makefiles" $SRC_DIR $SRC_DIR/config $SRC_DIR/build $SRC_DIR/build/config $SRC_DIR/build/config/CMakeFiles/pylada.config.dir/DependInfo.cmake --color= Dependee "$SRC_DIR/build/config/CMakeFiles/pylada.config.dir/DependInfo.cmake" is newer than depender "$SRC_DIR/build/config/CMakeFiles/pylada.config.dir/depend.internal". Dependee "$SRC_DIR/build/config/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "$SRC_DIR/build/config/CMakeFiles/pylada.config.dir/depend.internal". Scanning dependencies of target pylada.config make[2]: Leaving directory `$SRC_DIR/build' make -f config/CMakeFiles/pylada.config.dir/build.make config/CMakeFiles/pylada.config.dir/build make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build/config && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/config/general.py $SRC_DIR/build/python_package/pylada/config/general.py cd $SRC_DIR/build/config && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/config/mpi.py $SRC_DIR/build/python_package/pylada/config/mpi.py cd $SRC_DIR/build/config && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/config/vasp.py $SRC_DIR/build/python_package/pylada/config/vasp.py cd $SRC_DIR/build/config && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/config/ipython.py $SRC_DIR/build/python_package/pylada/config/ipython.py cd $SRC_DIR/build/config && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/config/logging.py $SRC_DIR/build/python_package/pylada/config/logging.py cd $SRC_DIR/build/config && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/config/espresso.py $SRC_DIR/build/python_package/pylada/config/espresso.py make[2]: Leaving directory `$SRC_DIR/build' [100%] Built target pylada.config make -f periodic_table/CMakeFiles/pylada.periodic_table.dir/build.make periodic_table/CMakeFiles/pylada.periodic_table.dir/depend make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build && $BUILD_PREFIX/bin/cmake -E cmake_depends "Unix Makefiles" $SRC_DIR $SRC_DIR/periodic_table $SRC_DIR/build $SRC_DIR/build/periodic_table $SRC_DIR/build/periodic_table/CMakeFiles/pylada.periodic_table.dir/DependInfo.cmake --color= Dependee "$SRC_DIR/build/periodic_table/CMakeFiles/pylada.periodic_table.dir/DependInfo.cmake" is newer than depender "$SRC_DIR/build/periodic_table/CMakeFiles/pylada.periodic_table.dir/depend.internal". 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Scanning dependencies of target pylada.periodic_table make[2]: Leaving directory `$SRC_DIR/build' make -f periodic_table/CMakeFiles/pylada.periodic_table.dir/build.make periodic_table/CMakeFiles/pylada.periodic_table.dir/build make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build/periodic_table && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/periodic_table/__init__.py $SRC_DIR/build/python_package/pylada/periodic_table/__init__.py cd $SRC_DIR/build/periodic_table && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/periodic_table/_create_data.py $SRC_DIR/build/python_package/pylada/periodic_table/_create_data.py cd $SRC_DIR/build/periodic_table && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/periodic_table/_element.py $SRC_DIR/build/python_package/pylada/periodic_table/_element.py cd $SRC_DIR/build/periodic_table && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/periodic_table/_elements.py $SRC_DIR/build/python_package/pylada/periodic_table/_elements.py make[2]: Leaving directory `$SRC_DIR/build' [100%] Built target pylada.periodic_table make -f vasp/CMakeFiles/pylada.vasp.dir/build.make vasp/CMakeFiles/pylada.vasp.dir/depend make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build && $BUILD_PREFIX/bin/cmake -E cmake_depends "Unix Makefiles" $SRC_DIR $SRC_DIR/vasp $SRC_DIR/build $SRC_DIR/build/vasp $SRC_DIR/build/vasp/CMakeFiles/pylada.vasp.dir/DependInfo.cmake --color= Dependee "$SRC_DIR/build/vasp/CMakeFiles/pylada.vasp.dir/DependInfo.cmake" is newer than depender "$SRC_DIR/build/vasp/CMakeFiles/pylada.vasp.dir/depend.internal". 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Scanning dependencies of target pylada.vasp make[2]: Leaving directory `$SRC_DIR/build' make -f vasp/CMakeFiles/pylada.vasp.dir/build.make vasp/CMakeFiles/pylada.vasp.dir/build make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build/vasp && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/__init__.py $SRC_DIR/build/python_package/pylada/vasp/__init__.py cd $SRC_DIR/build/vasp && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/emass.py $SRC_DIR/build/python_package/pylada/vasp/emass.py cd $SRC_DIR/build/vasp && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/files.py $SRC_DIR/build/python_package/pylada/vasp/files.py cd $SRC_DIR/build/vasp && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/functional.py $SRC_DIR/build/python_package/pylada/vasp/functional.py cd $SRC_DIR/build/vasp && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/keywords.py $SRC_DIR/build/python_package/pylada/vasp/keywords.py cd $SRC_DIR/build/vasp && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/relax.py $SRC_DIR/build/python_package/pylada/vasp/relax.py cd $SRC_DIR/build/vasp && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/specie.py $SRC_DIR/build/python_package/pylada/vasp/specie.py make[2]: Leaving directory `$SRC_DIR/build' [100%] Built target pylada.vasp make -f vasp/incar/CMakeFiles/pylada.vasp.incar.dir/build.make vasp/incar/CMakeFiles/pylada.vasp.incar.dir/depend make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build && $BUILD_PREFIX/bin/cmake -E cmake_depends "Unix Makefiles" $SRC_DIR $SRC_DIR/vasp/incar $SRC_DIR/build $SRC_DIR/build/vasp/incar $SRC_DIR/build/vasp/incar/CMakeFiles/pylada.vasp.incar.dir/DependInfo.cmake --color= Dependee "$SRC_DIR/build/vasp/incar/CMakeFiles/pylada.vasp.incar.dir/DependInfo.cmake" is newer than depender "$SRC_DIR/build/vasp/incar/CMakeFiles/pylada.vasp.incar.dir/depend.internal". Dependee "$SRC_DIR/build/vasp/incar/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "$SRC_DIR/build/vasp/incar/CMakeFiles/pylada.vasp.incar.dir/depend.internal". Scanning dependencies of target pylada.vasp.incar make[2]: Leaving directory `$SRC_DIR/build' make -f vasp/incar/CMakeFiles/pylada.vasp.incar.dir/build.make vasp/incar/CMakeFiles/pylada.vasp.incar.dir/build make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build/vasp/incar && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/incar/__init__.py $SRC_DIR/build/python_package/pylada/vasp/incar/__init__.py cd $SRC_DIR/build/vasp/incar && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/incar/_params.py $SRC_DIR/build/python_package/pylada/vasp/incar/_params.py make[2]: Leaving directory `$SRC_DIR/build' [100%] Built target pylada.vasp.incar make -f vasp/incar/tests/CMakeFiles/pylada.vasp.incar.tests.dir/build.make vasp/incar/tests/CMakeFiles/pylada.vasp.incar.tests.dir/depend make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build && $BUILD_PREFIX/bin/cmake -E cmake_depends "Unix Makefiles" $SRC_DIR $SRC_DIR/vasp/incar/tests $SRC_DIR/build $SRC_DIR/build/vasp/incar/tests $SRC_DIR/build/vasp/incar/tests/CMakeFiles/pylada.vasp.incar.tests.dir/DependInfo.cmake --color= Dependee "$SRC_DIR/build/vasp/incar/tests/CMakeFiles/pylada.vasp.incar.tests.dir/DependInfo.cmake" is newer than depender "$SRC_DIR/build/vasp/incar/tests/CMakeFiles/pylada.vasp.incar.tests.dir/depend.internal". Dependee "$SRC_DIR/build/vasp/incar/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "$SRC_DIR/build/vasp/incar/tests/CMakeFiles/pylada.vasp.incar.tests.dir/depend.internal". Scanning dependencies of target pylada.vasp.incar.tests make[2]: Leaving directory `$SRC_DIR/build' make -f vasp/incar/tests/CMakeFiles/pylada.vasp.incar.tests.dir/build.make vasp/incar/tests/CMakeFiles/pylada.vasp.incar.tests.dir/build make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build/vasp/incar/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/incar/tests/restart_class.py $SRC_DIR/build/python_package/pylada/vasp/incar/tests/restart_class.py cd $SRC_DIR/build/vasp/incar/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/incar/tests/test_choices.py $SRC_DIR/build/python_package/pylada/vasp/incar/tests/test_choices.py cd $SRC_DIR/build/vasp/incar/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/incar/tests/test_incar_algo.py $SRC_DIR/build/python_package/pylada/vasp/incar/tests/test_incar_algo.py cd $SRC_DIR/build/vasp/incar/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/incar/tests/test_magmom.py $SRC_DIR/build/python_package/pylada/vasp/incar/tests/test_magmom.py cd $SRC_DIR/build/vasp/incar/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/incar/tests/test_nelect.py $SRC_DIR/build/python_package/pylada/vasp/incar/tests/test_nelect.py cd $SRC_DIR/build/vasp/incar/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/incar/tests/test_npar.py $SRC_DIR/build/python_package/pylada/vasp/incar/tests/test_npar.py cd $SRC_DIR/build/vasp/incar/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/incar/tests/test_others.py $SRC_DIR/build/python_package/pylada/vasp/incar/tests/test_others.py cd $SRC_DIR/build/vasp/incar/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/incar/tests/test_relax.py $SRC_DIR/build/python_package/pylada/vasp/incar/tests/test_relax.py cd $SRC_DIR/build/vasp/incar/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/incar/tests/test_restart.py $SRC_DIR/build/python_package/pylada/vasp/incar/tests/test_restart.py cd $SRC_DIR/build/vasp/incar/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/incar/tests/test_smearing.py $SRC_DIR/build/python_package/pylada/vasp/incar/tests/test_smearing.py cd $SRC_DIR/build/vasp/incar/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/incar/tests/test_uparams.py $SRC_DIR/build/python_package/pylada/vasp/incar/tests/test_uparams.py make[2]: Leaving directory `$SRC_DIR/build' [100%] Built target pylada.vasp.incar.tests make -f vasp/extract/CMakeFiles/pylada.vasp.extract.dir/build.make vasp/extract/CMakeFiles/pylada.vasp.extract.dir/depend make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build && $BUILD_PREFIX/bin/cmake -E cmake_depends "Unix Makefiles" $SRC_DIR $SRC_DIR/vasp/extract $SRC_DIR/build $SRC_DIR/build/vasp/extract $SRC_DIR/build/vasp/extract/CMakeFiles/pylada.vasp.extract.dir/DependInfo.cmake --color= Dependee "$SRC_DIR/build/vasp/extract/CMakeFiles/pylada.vasp.extract.dir/DependInfo.cmake" is newer than depender "$SRC_DIR/build/vasp/extract/CMakeFiles/pylada.vasp.extract.dir/depend.internal". Dependee "$SRC_DIR/build/vasp/extract/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "$SRC_DIR/build/vasp/extract/CMakeFiles/pylada.vasp.extract.dir/depend.internal". Scanning dependencies of target pylada.vasp.extract make[2]: Leaving directory `$SRC_DIR/build' make -f vasp/extract/CMakeFiles/pylada.vasp.extract.dir/build.make vasp/extract/CMakeFiles/pylada.vasp.extract.dir/build make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build/vasp/extract && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/extract/__init__.py $SRC_DIR/build/python_package/pylada/vasp/extract/__init__.py cd $SRC_DIR/build/vasp/extract && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/extract/base.py $SRC_DIR/build/python_package/pylada/vasp/extract/base.py cd $SRC_DIR/build/vasp/extract && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/extract/mixin.py $SRC_DIR/build/python_package/pylada/vasp/extract/mixin.py make[2]: Leaving directory `$SRC_DIR/build' [100%] Built target pylada.vasp.extract make -f vasp/extract/tests/CMakeFiles/pylada.vasp.extract.tests.dir/build.make vasp/extract/tests/CMakeFiles/pylada.vasp.extract.tests.dir/depend make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build && $BUILD_PREFIX/bin/cmake -E cmake_depends "Unix Makefiles" $SRC_DIR $SRC_DIR/vasp/extract/tests $SRC_DIR/build $SRC_DIR/build/vasp/extract/tests $SRC_DIR/build/vasp/extract/tests/CMakeFiles/pylada.vasp.extract.tests.dir/DependInfo.cmake --color= Dependee "$SRC_DIR/build/vasp/extract/tests/CMakeFiles/pylada.vasp.extract.tests.dir/DependInfo.cmake" is newer than depender "$SRC_DIR/build/vasp/extract/tests/CMakeFiles/pylada.vasp.extract.tests.dir/depend.internal". Dependee "$SRC_DIR/build/vasp/extract/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "$SRC_DIR/build/vasp/extract/tests/CMakeFiles/pylada.vasp.extract.tests.dir/depend.internal". Scanning dependencies of target pylada.vasp.extract.tests make[2]: Leaving directory `$SRC_DIR/build' make -f vasp/extract/tests/CMakeFiles/pylada.vasp.extract.tests.dir/build.make vasp/extract/tests/CMakeFiles/pylada.vasp.extract.tests.dir/build make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build/vasp/extract/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/extract/tests/test_common.py $SRC_DIR/build/python_package/pylada/vasp/extract/tests/test_common.py cd $SRC_DIR/build/vasp/extract/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/extract/tests/test_dft.py $SRC_DIR/build/python_package/pylada/vasp/extract/tests/test_dft.py make[2]: Leaving directory `$SRC_DIR/build' [100%] Built target pylada.vasp.extract.tests make -f vasp/nlep/CMakeFiles/pylada.vasp.nlep.dir/build.make vasp/nlep/CMakeFiles/pylada.vasp.nlep.dir/depend make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build && $BUILD_PREFIX/bin/cmake -E cmake_depends "Unix Makefiles" $SRC_DIR $SRC_DIR/vasp/nlep $SRC_DIR/build $SRC_DIR/build/vasp/nlep $SRC_DIR/build/vasp/nlep/CMakeFiles/pylada.vasp.nlep.dir/DependInfo.cmake --color= Dependee "$SRC_DIR/build/vasp/nlep/CMakeFiles/pylada.vasp.nlep.dir/DependInfo.cmake" is newer than depender "$SRC_DIR/build/vasp/nlep/CMakeFiles/pylada.vasp.nlep.dir/depend.internal". Dependee "$SRC_DIR/build/vasp/nlep/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "$SRC_DIR/build/vasp/nlep/CMakeFiles/pylada.vasp.nlep.dir/depend.internal". Scanning dependencies of target pylada.vasp.nlep make[2]: Leaving directory `$SRC_DIR/build' make -f vasp/nlep/CMakeFiles/pylada.vasp.nlep.dir/build.make vasp/nlep/CMakeFiles/pylada.vasp.nlep.dir/build make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build/vasp/nlep && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/nlep/__init__.py $SRC_DIR/build/python_package/pylada/vasp/nlep/__init__.py cd $SRC_DIR/build/vasp/nlep && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/nlep/input_generic.py $SRC_DIR/build/python_package/pylada/vasp/nlep/input_generic.py cd $SRC_DIR/build/vasp/nlep && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/nlep/mpopt.py $SRC_DIR/build/python_package/pylada/vasp/nlep/mpopt.py cd $SRC_DIR/build/vasp/nlep && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/nlep/nlep.py $SRC_DIR/build/python_package/pylada/vasp/nlep/nlep.py cd $SRC_DIR/build/vasp/nlep && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/nlep/nlep_defaults.py $SRC_DIR/build/python_package/pylada/vasp/nlep/nlep_defaults.py cd $SRC_DIR/build/vasp/nlep && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/nlep/plotbs.py $SRC_DIR/build/python_package/pylada/vasp/nlep/plotbs.py cd $SRC_DIR/build/vasp/nlep && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/nlep/plotfit.py $SRC_DIR/build/python_package/pylada/vasp/nlep/plotfit.py cd $SRC_DIR/build/vasp/nlep && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/nlep/postprocessing.py $SRC_DIR/build/python_package/pylada/vasp/nlep/postprocessing.py cd $SRC_DIR/build/vasp/nlep && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/nlep/system_params.py $SRC_DIR/build/python_package/pylada/vasp/nlep/system_params.py cd $SRC_DIR/build/vasp/nlep && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/nlep/systems.py $SRC_DIR/build/python_package/pylada/vasp/nlep/systems.py make[2]: Leaving directory `$SRC_DIR/build' [100%] Built target pylada.vasp.nlep make -f vasp/tests/CMakeFiles/pylada.vasp.tests.dir/build.make vasp/tests/CMakeFiles/pylada.vasp.tests.dir/depend make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build && $BUILD_PREFIX/bin/cmake -E cmake_depends "Unix Makefiles" $SRC_DIR $SRC_DIR/vasp/tests $SRC_DIR/build $SRC_DIR/build/vasp/tests $SRC_DIR/build/vasp/tests/CMakeFiles/pylada.vasp.tests.dir/DependInfo.cmake --color= Dependee "$SRC_DIR/build/vasp/tests/CMakeFiles/pylada.vasp.tests.dir/DependInfo.cmake" is newer than depender "$SRC_DIR/build/vasp/tests/CMakeFiles/pylada.vasp.tests.dir/depend.internal". Dependee "$SRC_DIR/build/vasp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "$SRC_DIR/build/vasp/tests/CMakeFiles/pylada.vasp.tests.dir/depend.internal". Scanning dependencies of target pylada.vasp.tests make[2]: Leaving directory `$SRC_DIR/build' make -f vasp/tests/CMakeFiles/pylada.vasp.tests.dir/build.make vasp/tests/CMakeFiles/pylada.vasp.tests.dir/build make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build/vasp/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/tests/test_algo.py $SRC_DIR/build/python_package/pylada/vasp/tests/test_algo.py cd $SRC_DIR/build/vasp/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/tests/test_copyfiles.py $SRC_DIR/build/python_package/pylada/vasp/tests/test_copyfiles.py cd $SRC_DIR/build/vasp/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/tests/test_ediff.py $SRC_DIR/build/python_package/pylada/vasp/tests/test_ediff.py cd $SRC_DIR/build/vasp/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/tests/test_encut.py $SRC_DIR/build/python_package/pylada/vasp/tests/test_encut.py cd $SRC_DIR/build/vasp/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/tests/test_incar.py $SRC_DIR/build/python_package/pylada/vasp/tests/test_incar.py cd $SRC_DIR/build/vasp/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/tests/test_lsorbit.py $SRC_DIR/build/python_package/pylada/vasp/tests/test_lsorbit.py cd $SRC_DIR/build/vasp/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/tests/test_magmom_attribute.py $SRC_DIR/build/python_package/pylada/vasp/tests/test_magmom_attribute.py cd $SRC_DIR/build/vasp/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/tests/test_parse.py $SRC_DIR/build/python_package/pylada/vasp/tests/test_parse.py cd $SRC_DIR/build/vasp/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/tests/test_relax_attribute.py $SRC_DIR/build/python_package/pylada/vasp/tests/test_relax_attribute.py cd $SRC_DIR/build/vasp/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/tests/test_run.py $SRC_DIR/build/python_package/pylada/vasp/tests/test_run.py cd $SRC_DIR/build/vasp/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/tests/test_runepi.py $SRC_DIR/build/python_package/pylada/vasp/tests/test_runepi.py cd $SRC_DIR/build/vasp/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/tests/test_runepidoc.py $SRC_DIR/build/python_package/pylada/vasp/tests/test_runepidoc.py cd $SRC_DIR/build/vasp/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/tests/test_runmass.py $SRC_DIR/build/python_package/pylada/vasp/tests/test_runmass.py cd $SRC_DIR/build/vasp/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/tests/test_runrelax.py $SRC_DIR/build/python_package/pylada/vasp/tests/test_runrelax.py cd $SRC_DIR/build/vasp/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/tests/test_species.py $SRC_DIR/build/python_package/pylada/vasp/tests/test_species.py cd $SRC_DIR/build/vasp/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/tests/test_system.py $SRC_DIR/build/python_package/pylada/vasp/tests/test_system.py cd $SRC_DIR/build/vasp/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/tests/test_uparams_attribute.py $SRC_DIR/build/python_package/pylada/vasp/tests/test_uparams_attribute.py cd $SRC_DIR/build/vasp/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/tests/test_vasp_keywords.py $SRC_DIR/build/python_package/pylada/vasp/tests/test_vasp_keywords.py cd $SRC_DIR/build/vasp/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/tests/test_vasp_nelect.py $SRC_DIR/build/python_package/pylada/vasp/tests/test_vasp_nelect.py cd $SRC_DIR/build/vasp/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/vasp/tests/test_vasp_restart.py $SRC_DIR/build/python_package/pylada/vasp/tests/test_vasp_restart.py make[2]: Leaving directory `$SRC_DIR/build' [100%] Built target pylada.vasp.tests make -f process/CMakeFiles/pylada.process.dir/build.make process/CMakeFiles/pylada.process.dir/depend make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build && $BUILD_PREFIX/bin/cmake -E cmake_depends "Unix Makefiles" $SRC_DIR $SRC_DIR/process $SRC_DIR/build $SRC_DIR/build/process $SRC_DIR/build/process/CMakeFiles/pylada.process.dir/DependInfo.cmake --color= Dependee "$SRC_DIR/build/process/CMakeFiles/pylada.process.dir/DependInfo.cmake" is newer than depender "$SRC_DIR/build/process/CMakeFiles/pylada.process.dir/depend.internal". Dependee "$SRC_DIR/build/process/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "$SRC_DIR/build/process/CMakeFiles/pylada.process.dir/depend.internal". Scanning dependencies of target pylada.process make[2]: Leaving directory `$SRC_DIR/build' make -f process/CMakeFiles/pylada.process.dir/build.make process/CMakeFiles/pylada.process.dir/build make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build/process && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/process/__init__.py $SRC_DIR/build/python_package/pylada/process/__init__.py cd $SRC_DIR/build/process && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/process/call.py $SRC_DIR/build/python_package/pylada/process/call.py cd $SRC_DIR/build/process && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/process/dummy.py $SRC_DIR/build/python_package/pylada/process/dummy.py cd $SRC_DIR/build/process && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/process/iterator.py $SRC_DIR/build/python_package/pylada/process/iterator.py cd $SRC_DIR/build/process && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/process/jobfolder.py $SRC_DIR/build/python_package/pylada/process/jobfolder.py cd $SRC_DIR/build/process && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/process/mpi.py $SRC_DIR/build/python_package/pylada/process/mpi.py cd $SRC_DIR/build/process && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/process/pool.py $SRC_DIR/build/python_package/pylada/process/pool.py cd $SRC_DIR/build/process && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/process/process.py $SRC_DIR/build/python_package/pylada/process/process.py cd $SRC_DIR/build/process && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/process/program.py $SRC_DIR/build/python_package/pylada/process/program.py cd $SRC_DIR/build/process && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/process/shared.py $SRC_DIR/build/python_package/pylada/process/shared.py make[2]: Leaving directory `$SRC_DIR/build' [100%] Built target pylada.process make -f process/tests/CMakeFiles/pylada.process.tests.dir/build.make process/tests/CMakeFiles/pylada.process.tests.dir/depend make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build && $BUILD_PREFIX/bin/cmake -E cmake_depends "Unix Makefiles" $SRC_DIR $SRC_DIR/process/tests $SRC_DIR/build $SRC_DIR/build/process/tests $SRC_DIR/build/process/tests/CMakeFiles/pylada.process.tests.dir/DependInfo.cmake --color= Dependee "$SRC_DIR/build/process/tests/CMakeFiles/pylada.process.tests.dir/DependInfo.cmake" is newer than depender "$SRC_DIR/build/process/tests/CMakeFiles/pylada.process.tests.dir/depend.internal". Dependee "$SRC_DIR/build/process/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "$SRC_DIR/build/process/tests/CMakeFiles/pylada.process.tests.dir/depend.internal". Scanning dependencies of target pylada.process.tests make[2]: Leaving directory `$SRC_DIR/build' make -f process/tests/CMakeFiles/pylada.process.tests.dir/build.make process/tests/CMakeFiles/pylada.process.tests.dir/build make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build/process/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/process/tests/fixtures.py $SRC_DIR/build/python_package/pylada/process/tests/fixtures.py cd $SRC_DIR/build/process/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/process/tests/functional.py $SRC_DIR/build/python_package/pylada/process/tests/functional.py cd $SRC_DIR/build/process/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/process/tests/globalcomm.py $SRC_DIR/build/python_package/pylada/process/tests/globalcomm.py cd $SRC_DIR/build/process/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/process/tests/mpi.py $SRC_DIR/build/python_package/pylada/process/tests/mpi.py cd $SRC_DIR/build/process/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/process/tests/placement.py $SRC_DIR/build/python_package/pylada/process/tests/placement.py cd $SRC_DIR/build/process/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/process/tests/test_call.py $SRC_DIR/build/python_package/pylada/process/tests/test_call.py cd $SRC_DIR/build/process/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/process/tests/test_iterator.py $SRC_DIR/build/python_package/pylada/process/tests/test_iterator.py cd $SRC_DIR/build/process/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/process/tests/test_program.py $SRC_DIR/build/python_package/pylada/process/tests/test_program.py cd $SRC_DIR/build/process/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/process/tests/test_jobfolder.py $SRC_DIR/build/python_package/pylada/process/tests/test_jobfolder.py cd $SRC_DIR/build/process/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/process/tests/test_pool.py $SRC_DIR/build/python_package/pylada/process/tests/test_pool.py make[2]: Leaving directory `$SRC_DIR/build' [100%] Built target pylada.process.tests make -f jobfolder/CMakeFiles/pylada.jobfolder.dir/build.make jobfolder/CMakeFiles/pylada.jobfolder.dir/depend make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build && $BUILD_PREFIX/bin/cmake -E cmake_depends "Unix Makefiles" $SRC_DIR $SRC_DIR/jobfolder $SRC_DIR/build $SRC_DIR/build/jobfolder $SRC_DIR/build/jobfolder/CMakeFiles/pylada.jobfolder.dir/DependInfo.cmake --color= Dependee "$SRC_DIR/build/jobfolder/CMakeFiles/pylada.jobfolder.dir/DependInfo.cmake" is newer than depender "$SRC_DIR/build/jobfolder/CMakeFiles/pylada.jobfolder.dir/depend.internal". Dependee "$SRC_DIR/build/jobfolder/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "$SRC_DIR/build/jobfolder/CMakeFiles/pylada.jobfolder.dir/depend.internal". Scanning dependencies of target pylada.jobfolder make[2]: Leaving directory `$SRC_DIR/build' make -f jobfolder/CMakeFiles/pylada.jobfolder.dir/build.make jobfolder/CMakeFiles/pylada.jobfolder.dir/build make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build/jobfolder && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/jobfolder/__init__.py $SRC_DIR/build/python_package/pylada/jobfolder/__init__.py cd $SRC_DIR/build/jobfolder && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/jobfolder/extract.py $SRC_DIR/build/python_package/pylada/jobfolder/extract.py cd $SRC_DIR/build/jobfolder && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/jobfolder/forwarding_dict.py $SRC_DIR/build/python_package/pylada/jobfolder/forwarding_dict.py cd $SRC_DIR/build/jobfolder && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/jobfolder/jobfolder.py $SRC_DIR/build/python_package/pylada/jobfolder/jobfolder.py cd $SRC_DIR/build/jobfolder && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/jobfolder/manipulator.py $SRC_DIR/build/python_package/pylada/jobfolder/manipulator.py cd $SRC_DIR/build/jobfolder && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/jobfolder/massextract.py $SRC_DIR/build/python_package/pylada/jobfolder/massextract.py cd $SRC_DIR/build/jobfolder && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/jobfolder/ordered_dict.py $SRC_DIR/build/python_package/pylada/jobfolder/ordered_dict.py make[2]: Leaving directory `$SRC_DIR/build' [100%] Built target pylada.jobfolder make -f jobfolder/tests/CMakeFiles/pylada.jobfolder.tests.dir/build.make jobfolder/tests/CMakeFiles/pylada.jobfolder.tests.dir/depend make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build && $BUILD_PREFIX/bin/cmake -E cmake_depends "Unix Makefiles" $SRC_DIR $SRC_DIR/jobfolder/tests $SRC_DIR/build $SRC_DIR/build/jobfolder/tests $SRC_DIR/build/jobfolder/tests/CMakeFiles/pylada.jobfolder.tests.dir/DependInfo.cmake --color= Dependee "$SRC_DIR/build/jobfolder/tests/CMakeFiles/pylada.jobfolder.tests.dir/DependInfo.cmake" is newer than depender "$SRC_DIR/build/jobfolder/tests/CMakeFiles/pylada.jobfolder.tests.dir/depend.internal". Dependee "$SRC_DIR/build/jobfolder/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "$SRC_DIR/build/jobfolder/tests/CMakeFiles/pylada.jobfolder.tests.dir/depend.internal". Scanning dependencies of target pylada.jobfolder.tests make[2]: Leaving directory `$SRC_DIR/build' make -f jobfolder/tests/CMakeFiles/pylada.jobfolder.tests.dir/build.make jobfolder/tests/CMakeFiles/pylada.jobfolder.tests.dir/build make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build/jobfolder/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/jobfolder/tests/dummy.py $SRC_DIR/build/python_package/pylada/jobfolder/tests/dummy.py cd $SRC_DIR/build/jobfolder/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/jobfolder/tests/test_collect.py $SRC_DIR/build/python_package/pylada/jobfolder/tests/test_collect.py cd $SRC_DIR/build/jobfolder/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/jobfolder/tests/test_forwardingdict.py $SRC_DIR/build/python_package/pylada/jobfolder/tests/test_forwardingdict.py cd $SRC_DIR/build/jobfolder/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/jobfolder/tests/test_jobfolder.py $SRC_DIR/build/python_package/pylada/jobfolder/tests/test_jobfolder.py cd $SRC_DIR/build/jobfolder/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/jobfolder/tests/test_jobparams.py $SRC_DIR/build/python_package/pylada/jobfolder/tests/test_jobparams.py make[2]: Leaving directory `$SRC_DIR/build' [100%] Built target pylada.jobfolder.tests make -f ipython/CMakeFiles/pylada.ipython.dir/build.make ipython/CMakeFiles/pylada.ipython.dir/depend make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build && $BUILD_PREFIX/bin/cmake -E cmake_depends "Unix Makefiles" $SRC_DIR $SRC_DIR/ipython $SRC_DIR/build $SRC_DIR/build/ipython $SRC_DIR/build/ipython/CMakeFiles/pylada.ipython.dir/DependInfo.cmake --color= Dependee "$SRC_DIR/build/ipython/CMakeFiles/pylada.ipython.dir/DependInfo.cmake" is newer than depender "$SRC_DIR/build/ipython/CMakeFiles/pylada.ipython.dir/depend.internal". Dependee "$SRC_DIR/build/ipython/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "$SRC_DIR/build/ipython/CMakeFiles/pylada.ipython.dir/depend.internal". Scanning dependencies of target pylada.ipython make[2]: Leaving directory `$SRC_DIR/build' make -f ipython/CMakeFiles/pylada.ipython.dir/build.make ipython/CMakeFiles/pylada.ipython.dir/build make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build/ipython && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/ipython/__init__.py $SRC_DIR/build/python_package/pylada/ipython/__init__.py cd $SRC_DIR/build/ipython && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/ipython/explore.py $SRC_DIR/build/python_package/pylada/ipython/explore.py cd $SRC_DIR/build/ipython && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/ipython/export.py $SRC_DIR/build/python_package/pylada/ipython/export.py cd $SRC_DIR/build/ipython && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/ipython/extension.py $SRC_DIR/build/python_package/pylada/ipython/extension.py cd $SRC_DIR/build/ipython && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/ipython/goto.py $SRC_DIR/build/python_package/pylada/ipython/goto.py cd $SRC_DIR/build/ipython && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/ipython/jmol.py $SRC_DIR/build/python_package/pylada/ipython/jmol.py cd $SRC_DIR/build/ipython && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/ipython/listfolders.py $SRC_DIR/build/python_package/pylada/ipython/listfolders.py cd $SRC_DIR/build/ipython && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/ipython/magics.py $SRC_DIR/build/python_package/pylada/ipython/magics.py cd $SRC_DIR/build/ipython && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/ipython/manipfolders.py $SRC_DIR/build/python_package/pylada/ipython/manipfolders.py cd $SRC_DIR/build/ipython && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/ipython/record.py $SRC_DIR/build/python_package/pylada/ipython/record.py cd $SRC_DIR/build/ipython && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/ipython/savefolders.py $SRC_DIR/build/python_package/pylada/ipython/savefolders.py cd $SRC_DIR/build/ipython && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/ipython/showme.py $SRC_DIR/build/python_package/pylada/ipython/showme.py make[2]: Leaving directory `$SRC_DIR/build' [100%] Built target pylada.ipython make -f ipython/launch/CMakeFiles/pylada.ipython.launch.dir/build.make ipython/launch/CMakeFiles/pylada.ipython.launch.dir/depend make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build && $BUILD_PREFIX/bin/cmake -E cmake_depends "Unix Makefiles" $SRC_DIR $SRC_DIR/ipython/launch $SRC_DIR/build $SRC_DIR/build/ipython/launch $SRC_DIR/build/ipython/launch/CMakeFiles/pylada.ipython.launch.dir/DependInfo.cmake --color= Dependee "$SRC_DIR/build/ipython/launch/CMakeFiles/pylada.ipython.launch.dir/DependInfo.cmake" is newer than depender "$SRC_DIR/build/ipython/launch/CMakeFiles/pylada.ipython.launch.dir/depend.internal". Dependee "$SRC_DIR/build/ipython/launch/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "$SRC_DIR/build/ipython/launch/CMakeFiles/pylada.ipython.launch.dir/depend.internal". Scanning dependencies of target pylada.ipython.launch make[2]: Leaving directory `$SRC_DIR/build' make -f ipython/launch/CMakeFiles/pylada.ipython.launch.dir/build.make ipython/launch/CMakeFiles/pylada.ipython.launch.dir/build make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build/ipython/launch && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/ipython/launch/__init__.py $SRC_DIR/build/python_package/pylada/ipython/launch/__init__.py cd $SRC_DIR/build/ipython/launch && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/ipython/launch/array.py $SRC_DIR/build/python_package/pylada/ipython/launch/array.py cd $SRC_DIR/build/ipython/launch && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/ipython/launch/array_script.py $SRC_DIR/build/python_package/pylada/ipython/launch/array_script.py cd $SRC_DIR/build/ipython/launch && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/ipython/launch/asone.py $SRC_DIR/build/python_package/pylada/ipython/launch/asone.py cd $SRC_DIR/build/ipython/launch && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/ipython/launch/asone_script.py $SRC_DIR/build/python_package/pylada/ipython/launch/asone_script.py cd $SRC_DIR/build/ipython/launch && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/ipython/launch/interactive.py $SRC_DIR/build/python_package/pylada/ipython/launch/interactive.py cd $SRC_DIR/build/ipython/launch && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/ipython/launch/scattered.py $SRC_DIR/build/python_package/pylada/ipython/launch/scattered.py cd $SRC_DIR/build/ipython/launch && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/ipython/launch/scattered_script.py $SRC_DIR/build/python_package/pylada/ipython/launch/scattered_script.py cd $SRC_DIR/build/ipython/launch && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/ipython/launch/single.py $SRC_DIR/build/python_package/pylada/ipython/launch/single.py make[2]: Leaving directory `$SRC_DIR/build' [100%] Built target pylada.ipython.launch make -f ipython/tests/CMakeFiles/pylada.ipython.tests.dir/build.make ipython/tests/CMakeFiles/pylada.ipython.tests.dir/depend make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build && $BUILD_PREFIX/bin/cmake -E cmake_depends "Unix Makefiles" $SRC_DIR $SRC_DIR/ipython/tests $SRC_DIR/build $SRC_DIR/build/ipython/tests $SRC_DIR/build/ipython/tests/CMakeFiles/pylada.ipython.tests.dir/DependInfo.cmake --color= Dependee "$SRC_DIR/build/ipython/tests/CMakeFiles/pylada.ipython.tests.dir/DependInfo.cmake" is newer than depender "$SRC_DIR/build/ipython/tests/CMakeFiles/pylada.ipython.tests.dir/depend.internal". Dependee "$SRC_DIR/build/ipython/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "$SRC_DIR/build/ipython/tests/CMakeFiles/pylada.ipython.tests.dir/depend.internal". Scanning dependencies of target pylada.ipython.tests make[2]: Leaving directory `$SRC_DIR/build' make -f ipython/tests/CMakeFiles/pylada.ipython.tests.dir/build.make ipython/tests/CMakeFiles/pylada.ipython.tests.dir/build make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build/ipython/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/ipython/tests/dummy.py $SRC_DIR/build/python_package/pylada/ipython/tests/dummy.py cd $SRC_DIR/build/ipython/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/ipython/tests/explore.py $SRC_DIR/build/python_package/pylada/ipython/tests/explore.py cd $SRC_DIR/build/ipython/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/ipython/tests/goto.py $SRC_DIR/build/python_package/pylada/ipython/tests/goto.py make[2]: Leaving directory `$SRC_DIR/build' [100%] Built target pylada.ipython.tests make -f espresso/CMakeFiles/pylada.espresso.dir/build.make espresso/CMakeFiles/pylada.espresso.dir/depend make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build && $BUILD_PREFIX/bin/cmake -E cmake_depends "Unix Makefiles" $SRC_DIR $SRC_DIR/espresso $SRC_DIR/build $SRC_DIR/build/espresso $SRC_DIR/build/espresso/CMakeFiles/pylada.espresso.dir/DependInfo.cmake --color= Dependee "$SRC_DIR/build/espresso/CMakeFiles/pylada.espresso.dir/DependInfo.cmake" is newer than depender "$SRC_DIR/build/espresso/CMakeFiles/pylada.espresso.dir/depend.internal". Dependee "$SRC_DIR/build/espresso/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "$SRC_DIR/build/espresso/CMakeFiles/pylada.espresso.dir/depend.internal". Scanning dependencies of target pylada.espresso make[2]: Leaving directory `$SRC_DIR/build' make -f espresso/CMakeFiles/pylada.espresso.dir/build.make espresso/CMakeFiles/pylada.espresso.dir/build make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build/espresso && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/espresso/__init__.py $SRC_DIR/build/python_package/pylada/espresso/__init__.py cd $SRC_DIR/build/espresso && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/espresso/card.py $SRC_DIR/build/python_package/pylada/espresso/card.py cd $SRC_DIR/build/espresso && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/espresso/extract.py $SRC_DIR/build/python_package/pylada/espresso/extract.py cd $SRC_DIR/build/espresso && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/espresso/functional.py $SRC_DIR/build/python_package/pylada/espresso/functional.py cd $SRC_DIR/build/espresso && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/espresso/misc.py $SRC_DIR/build/python_package/pylada/espresso/misc.py cd $SRC_DIR/build/espresso && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/espresso/namelists.py $SRC_DIR/build/python_package/pylada/espresso/namelists.py cd $SRC_DIR/build/espresso && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/espresso/pwscf_namelists.py $SRC_DIR/build/python_package/pylada/espresso/pwscf_namelists.py cd $SRC_DIR/build/espresso && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/espresso/specie.py $SRC_DIR/build/python_package/pylada/espresso/specie.py cd $SRC_DIR/build/espresso && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/espresso/structure_handling.py $SRC_DIR/build/python_package/pylada/espresso/structure_handling.py cd $SRC_DIR/build/espresso && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/espresso/trait_types.py $SRC_DIR/build/python_package/pylada/espresso/trait_types.py make[2]: Leaving directory `$SRC_DIR/build' [100%] Built target pylada.espresso make -f espresso/tests/CMakeFiles/pylada.espresso.tests.dir/build.make espresso/tests/CMakeFiles/pylada.espresso.tests.dir/depend make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build && $BUILD_PREFIX/bin/cmake -E cmake_depends "Unix Makefiles" $SRC_DIR $SRC_DIR/espresso/tests $SRC_DIR/build $SRC_DIR/build/espresso/tests $SRC_DIR/build/espresso/tests/CMakeFiles/pylada.espresso.tests.dir/DependInfo.cmake --color= Dependee "$SRC_DIR/build/espresso/tests/CMakeFiles/pylada.espresso.tests.dir/DependInfo.cmake" is newer than depender "$SRC_DIR/build/espresso/tests/CMakeFiles/pylada.espresso.tests.dir/depend.internal". Dependee "$SRC_DIR/build/espresso/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "$SRC_DIR/build/espresso/tests/CMakeFiles/pylada.espresso.tests.dir/depend.internal". Scanning dependencies of target pylada.espresso.tests make[2]: Leaving directory `$SRC_DIR/build' make -f espresso/tests/CMakeFiles/pylada.espresso.tests.dir/build.make espresso/tests/CMakeFiles/pylada.espresso.tests.dir/build make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build/espresso/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/espresso/tests/dummy_pwscf.py $SRC_DIR/build/python_package/pylada/espresso/tests/dummy_pwscf.py cd $SRC_DIR/build/espresso/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/espresso/tests/extract.py $SRC_DIR/build/python_package/pylada/espresso/tests/extract.py cd $SRC_DIR/build/espresso/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/espresso/tests/fixtures.py $SRC_DIR/build/python_package/pylada/espresso/tests/fixtures.py cd $SRC_DIR/build/espresso/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/espresso/tests/test_card.py $SRC_DIR/build/python_package/pylada/espresso/tests/test_card.py cd $SRC_DIR/build/espresso/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/espresso/tests/test_extract.py $SRC_DIR/build/python_package/pylada/espresso/tests/test_extract.py cd $SRC_DIR/build/espresso/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/espresso/tests/test_namelists.py $SRC_DIR/build/python_package/pylada/espresso/tests/test_namelists.py cd $SRC_DIR/build/espresso/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/espresso/tests/test_pwscf.py $SRC_DIR/build/python_package/pylada/espresso/tests/test_pwscf.py cd $SRC_DIR/build/espresso/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/espresso/tests/test_structure.py $SRC_DIR/build/python_package/pylada/espresso/tests/test_structure.py cd $SRC_DIR/build/espresso/tests && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/espresso/tests/test_trait_types.py $SRC_DIR/build/python_package/pylada/espresso/tests/test_trait_types.py make[2]: Leaving directory `$SRC_DIR/build' [100%] Built target pylada.espresso.tests make -f espresso/tests/bdd/CMakeFiles/pylada.espresso.tests.bdd.dir/build.make espresso/tests/bdd/CMakeFiles/pylada.espresso.tests.bdd.dir/depend make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build && $BUILD_PREFIX/bin/cmake -E cmake_depends "Unix Makefiles" $SRC_DIR $SRC_DIR/espresso/tests/bdd $SRC_DIR/build $SRC_DIR/build/espresso/tests/bdd $SRC_DIR/build/espresso/tests/bdd/CMakeFiles/pylada.espresso.tests.bdd.dir/DependInfo.cmake --color= Dependee "$SRC_DIR/build/espresso/tests/bdd/CMakeFiles/pylada.espresso.tests.bdd.dir/DependInfo.cmake" is newer than depender "$SRC_DIR/build/espresso/tests/bdd/CMakeFiles/pylada.espresso.tests.bdd.dir/depend.internal". Dependee "$SRC_DIR/build/espresso/tests/bdd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "$SRC_DIR/build/espresso/tests/bdd/CMakeFiles/pylada.espresso.tests.bdd.dir/depend.internal". Scanning dependencies of target pylada.espresso.tests.bdd make[2]: Leaving directory `$SRC_DIR/build' make -f espresso/tests/bdd/CMakeFiles/pylada.espresso.tests.bdd.dir/build.make espresso/tests/bdd/CMakeFiles/pylada.espresso.tests.bdd.dir/build make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build/espresso/tests/bdd && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/espresso/tests/bdd/fixtures.py $SRC_DIR/build/python_package/pylada/espresso/tests/bdd/fixtures.py cd $SRC_DIR/build/espresso/tests/bdd && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/espresso/tests/bdd/test_restart.py $SRC_DIR/build/python_package/pylada/espresso/tests/bdd/test_restart.py cd $SRC_DIR/build/espresso/tests/bdd && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/espresso/tests/bdd/test_single_run.py $SRC_DIR/build/python_package/pylada/espresso/tests/bdd/test_single_run.py cd $SRC_DIR/build/espresso/tests/bdd && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/espresso/tests/bdd/test_writing_input.py $SRC_DIR/build/python_package/pylada/espresso/tests/bdd/test_writing_input.py make[2]: Leaving directory `$SRC_DIR/build' [100%] Built target pylada.espresso.tests.bdd make -f notebooks/CMakeFiles/pylada.notebooks.tests.dir/build.make notebooks/CMakeFiles/pylada.notebooks.tests.dir/depend make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build && $BUILD_PREFIX/bin/cmake -E cmake_depends "Unix Makefiles" $SRC_DIR $SRC_DIR/notebooks $SRC_DIR/build $SRC_DIR/build/notebooks $SRC_DIR/build/notebooks/CMakeFiles/pylada.notebooks.tests.dir/DependInfo.cmake --color= Dependee "$SRC_DIR/build/notebooks/CMakeFiles/pylada.notebooks.tests.dir/DependInfo.cmake" is newer than depender "$SRC_DIR/build/notebooks/CMakeFiles/pylada.notebooks.tests.dir/depend.internal". Dependee "$SRC_DIR/build/notebooks/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "$SRC_DIR/build/notebooks/CMakeFiles/pylada.notebooks.tests.dir/depend.internal". Scanning dependencies of target pylada.notebooks.tests make[2]: Leaving directory `$SRC_DIR/build' make -f notebooks/CMakeFiles/pylada.notebooks.tests.dir/build.make notebooks/CMakeFiles/pylada.notebooks.tests.dir/build make[2]: Entering directory `$SRC_DIR/build' cd $SRC_DIR/build/notebooks && $BUILD_PREFIX/bin/cmake -E copy_if_different $SRC_DIR/notebooks/test_notebooks.py $SRC_DIR/build/python_package/pylada/notebooks/tests/test_notebooks.py make[2]: Leaving directory `$SRC_DIR/build' [100%] Built target pylada.notebooks.tests make[1]: Leaving directory `$SRC_DIR/build' $BUILD_PREFIX/bin/cmake -E cmake_progress_start $SRC_DIR/build/CMakeFiles 0 UpdateCTestConfiguration from :$SRC_DIR/build/DartConfiguration.tcl UpdateCTestConfiguration from :$SRC_DIR/build/DartConfiguration.tcl Test project $SRC_DIR/build Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: pylada.crystal.atom 1: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/crystal/tests/test_atom.py" 1: Test timeout computed to be: 10000000 1: ============================= test session starts ============================== 1: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 1: rootdir: $SRC_DIR 1: plugins: bdd-3.1.0 1: collected 6 items 1: 1: ../../python_package/pylada/crystal/tests/test_atom.py ...... [100%] 1: 1: =============================== warnings summary =============================== 1: $SRC_DIR/build/python_package/pylada/vasp/extract/base.py:963 1: $SRC_DIR/build/python_package/pylada/vasp/extract/base.py:963: DeprecationWarning: invalid escape sequence \s 1: regex = """^\s*ZVAL\s*=\s*(.*)$""" 1: 1: $SRC_DIR/build/python_package/pylada/vasp/extract/base.py:989 1: $SRC_DIR/build/python_package/pylada/vasp/extract/base.py:989: DeprecationWarning: invalid escape sequence \s 1: regex = """^\s*NELECT\s*=\s*(\S+)\s+total\s+number\s+of\s+electrons\s*$""" 1: 1: $SRC_DIR/build/python_package/pylada/vasp/extract/base.py:1073 1: $SRC_DIR/build/python_package/pylada/vasp/extract/base.py:1073: DeprecationWarning: invalid escape sequence \s 1: """\s*NELMIN\s*=\s*\d+\s*;"""\ 1: 1: $SRC_DIR/build/python_package/pylada/vasp/extract/base.py:1074 1: $SRC_DIR/build/python_package/pylada/vasp/extract/base.py:1074: DeprecationWarning: invalid escape sequence \s 1: """\s*NELMDL\s*=\s*(-?\d+)""" 1: 1: $SRC_DIR/build/python_package/pylada/vasp/extract/base.py:1093 1: $SRC_DIR/build/python_package/pylada/vasp/extract/base.py:1093: DeprecationWarning: invalid escape sequence \s 1: result = self._find_first_OUTCAR("""NBANDS\s*=\s*(\d+)""") 1: 1: $SRC_DIR/build/python_package/pylada/vasp/extract/base.py:1102 1: $SRC_DIR/build/python_package/pylada/vasp/extract/base.py:1102: DeprecationWarning: invalid escape sequence \s 1: result = self._find_first_OUTCAR("""running\s+on\s+(\d+)\s+nodes""") 1: 1: $SRC_DIR/build/python_package/pylada/vasp/extract/base.py:1158 1: $SRC_DIR/build/python_package/pylada/vasp/extract/base.py:1158: DeprecationWarning: invalid escape sequence \s 1: """ Greps total energy extrapolated to $\sigma=0$ from OUTCAR. """ 1: 1: $SRC_DIR/build/python_package/pylada/vasp/extract/base.py:1162 1: $SRC_DIR/build/python_package/pylada/vasp/extract/base.py:1162: DeprecationWarning: invalid escape sequence \s 1: regex = """energy\s+without\s+entropy\s*=\s*(\S+)\s+energy\(sigma->0\)\s+=\s+(\S+)""" 1: 1: $SRC_DIR/build/python_package/pylada/vasp/extract/base.py:1171 1: $SRC_DIR/build/python_package/pylada/vasp/extract/base.py:1171: DeprecationWarning: invalid escape sequence \s 1: """ Greps total energy extrapolated to $\sigma=0$ from OUTCAR. """ 1: 1: $SRC_DIR/build/python_package/pylada/vasp/extract/base.py:1176 1: $SRC_DIR/build/python_package/pylada/vasp/extract/base.py:1176: DeprecationWarning: invalid escape sequence \s 1: regex = """energy\s+without\s+entropy\s*=\s*(\S+)\s+energy\(sigma->0\)\s+=\s+(\S+)""" 1: 1: $SRC_DIR/build/python_package/pylada/vasp/extract/base.py:1193 1: $SRC_DIR/build/python_package/pylada/vasp/extract/base.py:1193: DeprecationWarning: invalid escape sequence \s 1: regex = """energy\s+without\s+entropy =\s*(\S+)\s+energy\(sigma->0\)\s+=\s+(\S+)""" 1: 1: $SRC_DIR/build/python_package/pylada/vasp/extract/base.py:1309 1: $SRC_DIR/build/python_package/pylada/vasp/extract/base.py:1309: DeprecationWarning: invalid escape sequence \s 1: regex = """energy\s+without\s+entropy=\s*(\S+)\s+energy\(sigma->0\)\s+=\s+(\S+)""" 1: 1: $SRC_DIR/build/python_package/pylada/vasp/extract/base.py:1325 1: $SRC_DIR/build/python_package/pylada/vasp/extract/base.py:1325: DeprecationWarning: invalid escape sequence \s 1: regex = """energy\s+without\s+entropy=\s*(\S+)\s+energy\(sigma->0\)\s+=\s+(\S+)""" 1: 1: $SRC_DIR/build/python_package/pylada/vasp/extract/base.py:1435 1: $SRC_DIR/build/python_package/pylada/vasp/extract/base.py:1435: DeprecationWarning: invalid escape sequence \s 1: "\s*dimension x,y,z NGX =\s+(\d+)\s+NGY =\s+(\d+)\s+NGZ =\s+(\d+)" 1: 1: $SRC_DIR/build/python_package/pylada/vasp/extract/base.py:1453 1: $SRC_DIR/build/python_package/pylada/vasp/extract/base.py:1453: DeprecationWarning: invalid escape sequence \s 1: "\s*dimension x,y,z NGX =\s+(\d+)\s+NGY =\s+(\d+)\s+NGZ =\s+(\d+)" 1: 1: $SRC_DIR/build/python_package/pylada/vasp/extract/base.py:1698 1: $SRC_DIR/build/python_package/pylada/vasp/extract/base.py:1698: DeprecationWarning: invalid escape sequence \s 1: = """\s*Total\s+(\S+)\s+(\S+)\s+(\S+)\s+(\S+)\s+(\S+)\s+(\S+)\s*\n""" \ 1: 1: $SRC_DIR/build/python_package/pylada/vasp/extract/base.py:1699 1: $SRC_DIR/build/python_package/pylada/vasp/extract/base.py:1699: DeprecationWarning: invalid escape sequence \s 1: """\s*in kB\s+(\S+)\s+(\S+)\s+(\S+)\s+(\S+)\s+(\S+)\s+(\S+)\s*\n""" 1: 1: $SRC_DIR/build/python_package/pylada/vasp/extract/base.py:1737 1: $SRC_DIR/build/python_package/pylada/vasp/extract/base.py:1737: DeprecationWarning: invalid escape sequence \s 1: pattern = """ *POSITION\s*TOTAL-FORCE\s*\(eV\/Angst\)\s*\n""" \ 1: 1: $SRC_DIR/build/python_package/pylada/vasp/extract/base.py:1738 1: $SRC_DIR/build/python_package/pylada/vasp/extract/base.py:1738: DeprecationWarning: invalid escape sequence \s 1: """\s*-+\s*\n""" \ 1: 1: $SRC_DIR/build/python_package/pylada/vasp/extract/base.py:1739 1: $SRC_DIR/build/python_package/pylada/vasp/extract/base.py:1739: DeprecationWarning: invalid escape sequence \s 1: """(?:\s+\S+\s+\S+\s+\S+\s+\S+\s+\S+\s+\S+\s*\n)+""" \ 1: 1: $SRC_DIR/build/python_package/pylada/vasp/extract/base.py:1740 1: $SRC_DIR/build/python_package/pylada/vasp/extract/base.py:1740: DeprecationWarning: invalid escape sequence \s 1: """\s*-+\s*\n""" \ 1: 1: $SRC_DIR/build/python_package/pylada/vasp/extract/base.py:1741 1: $SRC_DIR/build/python_package/pylada/vasp/extract/base.py:1741: DeprecationWarning: invalid escape sequence \s 1: """\s*total drift""" 1: 1: $SRC_DIR/build/python_package/pylada/jobfolder/manipulator.py:170 1: $SRC_DIR/build/python_package/pylada/jobfolder/manipulator.py:170: DeprecationWarning: invalid escape sequence \S 1: if match("_cached_attr\S+", name): 1: 1: $SRC_DIR/build/python_package/pylada/jobfolder/extract.py:203 1: $SRC_DIR/build/python_package/pylada/jobfolder/extract.py:203: DeprecationWarning: invalid escape sequence \Z 1: if pattern[-1] in ('/', '\Z', '$'): 1: 1: $SRC_DIR/build/python_package/pylada/vasp/specie.py:214 1: $SRC_DIR/build/python_package/pylada/vasp/specie.py:214: DeprecationWarning: invalid escape sequence \s 1: r = re.compile("ENMAX\s+=\s+(\S+);\s+ENMIN") 1: 1: -- Docs: https://docs.pytest.org/en/latest/warnings.html 1: ==================== 6 passed, 25 warnings in 0.45 seconds ===================== 1/82 Test #1: pylada.crystal.atom ....................... Passed 1.09 sec test 2 Start 2: pylada.crystal.cellinvariants 2: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/crystal/tests/test_cellinvariants.py" 2: Test timeout computed to be: 10000000 2: ============================= test session starts ============================== 2: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 2: rootdir: $SRC_DIR 2: plugins: bdd-3.1.0 2: collected 12 items 2: 2: ../../python_package/pylada/crystal/tests/test_cellinvariants.py ....... [ 58%] 2: ..... [100%] 2: 2: ========================== 12 passed in 1.82 seconds =========================== 2/82 Test #2: pylada.crystal.cellinvariants ............. Passed 2.34 sec test 3 Start 3: pylada.crystal.coordination_shells 3: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/crystal/tests/test_coordination_shells.py" 3: Test timeout computed to be: 10000000 3: ============================= test session starts ============================== 3: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 3: rootdir: $SRC_DIR 3: plugins: bdd-3.1.0 3: collected 1 item 3: 3: ../../python_package/pylada/crystal/tests/test_coordination_shells.py . [100%] 3: 3: =========================== 1 passed in 2.59 seconds =========================== 3/82 Test #3: pylada.crystal.coordination_shells ........ Passed 3.07 sec test 4 Start 4: pylada.crystal.cutilities 4: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/crystal/tests/test_cutilities.py" 4: Test timeout computed to be: 10000000 4: ============================= test session starts ============================== 4: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 4: rootdir: $SRC_DIR 4: plugins: bdd-3.1.0 4: collected 5 items 4: 4: ../../python_package/pylada/crystal/tests/test_cutilities.py ..... [100%] 4: 4: =========================== 5 passed in 6.32 seconds =========================== 4/82 Test #4: pylada.crystal.cutilities ................. Passed 6.93 sec test 5 Start 5: pylada.crystal.hart-forcade 5: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/crystal/tests/test_hart-forcade.py" 5: Test timeout computed to be: 10000000 5: ============================= test session starts ============================== 5: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 5: rootdir: $SRC_DIR 5: plugins: bdd-3.1.0 5: collected 4 items 5: 5: ../../python_package/pylada/crystal/tests/test_hart-forcade.py .... [100%] 5: 5: =========================== 4 passed in 3.33 seconds =========================== 5/82 Test #5: pylada.crystal.hart-forcade ............... Passed 3.82 sec test 6 Start 6: pylada.crystal.map_sites 6: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/crystal/tests/test_map_sites.py" 6: Test timeout computed to be: 10000000 6: ============================= test session starts ============================== 6: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 6: rootdir: $SRC_DIR 6: plugins: bdd-3.1.0 6: collected 4 items 6: 6: ../../python_package/pylada/crystal/tests/test_map_sites.py ...F [100%] 6: 6: =================================== FAILURES =================================== 6: ___________________ test_map_sites_perturbed_structure[0.36] ___________________ 6: 6: u = 0.36 6: 6: @mark.parametrize('u', (0.25, 0.36)) 6: def test_map_sites_perturbed_structure(u): 6: from numpy.random import random 6: from pylada.crystal import map_sites 6: 6: > structure0, structure1, lattice = get_a_supercell(u) 6: 6: ../../python_package/pylada/crystal/tests/test_map_sites.py:78: 6: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 6: ../../python_package/pylada/crystal/tests/test_map_sites.py:56: in get_a_supercell 6: structure = supercell(lattice, cell) 6: cutilities.pyx:113: in crystal.cutilities.supercell 6: ??? 6: ../../python_package/pylada/crystal/hart_forcade.py:59: in __init__ 6: snf, left, right = smith_normal_form(integer_cell) 6: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 6: 6: > ??? 6: E pylada.error.singular_matrix: Input cell is singular 6: 6: cutilities.pyx:23: singular_matrix 6: ====================== 1 failed, 3 passed in 6.66 seconds ====================== 6/82 Test #6: pylada.crystal.map_sites ..................***Failed 7.17 sec test 7 Start 7: pylada.crystal.neighbors 7: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/crystal/tests/test_neighbors.py" 7: Test timeout computed to be: 10000000 7: ============================= test session starts ============================== 7: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 7: rootdir: $SRC_DIR 7: plugins: bdd-3.1.0 7: collected 1 item 7: 7: ../../python_package/pylada/crystal/tests/test_neighbors.py . [100%] 7: 7: =========================== 1 passed in 5.05 seconds =========================== 7/82 Test #7: pylada.crystal.neighbors .................. Passed 5.55 sec test 8 Start 8: pylada.crystal.primitive 8: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/crystal/tests/test_primitive.py" 8: Test timeout computed to be: 10000000 8: ============================= test session starts ============================== 8: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 8: rootdir: $SRC_DIR 8: plugins: bdd-3.1.0 8: collected 45 items 8: 8: ../../python_package/pylada/crystal/tests/test_primitive.py ............ [ 26%] 8: ................................. [100%] 8: 8: =============================== warnings summary =============================== 8: build/python_package/pylada/crystal/tests/test_primitive.py::test_segfault_issue_20 8: $SRC_DIR/build/python_package/pylada/crystal/read.py:351: DeprecationWarning: invalid escape sequence \* 8: """ 8: 8: -- Docs: https://docs.pytest.org/en/latest/warnings.html 8: ==================== 45 passed, 1 warnings in 10.31 seconds ==================== 8/82 Test #8: pylada.crystal.primitive .................. Passed 10.84 sec test 9 Start 9: pylada.crystal.space_group 9: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/crystal/tests/test_space_group.py" 9: Test timeout computed to be: 10000000 9: ============================= test session starts ============================== 9: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 9: rootdir: $SRC_DIR 9: plugins: bdd-3.1.0 9: collected 4 items 9: 9: ../../python_package/pylada/crystal/tests/test_space_group.py .... [100%] 9: 9: =========================== 4 passed in 9.52 seconds =========================== 9/82 Test #9: pylada.crystal.space_group ................ Passed 10.03 sec test 10 Start 10: pylada.crystal.splitconfigs 10: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/crystal/tests/test_splitconfigs.py" 10: Test timeout computed to be: 10000000 10: ============================= test session starts ============================== 10: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 10: rootdir: $SRC_DIR 10: plugins: bdd-3.1.0 10: collected 1 item 10: 10: ../../python_package/pylada/crystal/tests/test_splitconfigs.py s [100%] 10: 10: ========================== 1 skipped in 0.30 seconds =========================== 10/82 Test #10: pylada.crystal.splitconfigs ............... Passed 0.80 sec test 11 Start 11: pylada.crystal.structure 11: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/crystal/tests/test_structure.py" 11: Test timeout computed to be: 10000000 11: ============================= test session starts ============================== 11: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 11: rootdir: $SRC_DIR 11: plugins: bdd-3.1.0 11: collected 8 items 11: 11: ../../python_package/pylada/crystal/tests/test_structure.py ........ [100%] 11: 11: =========================== 8 passed in 0.40 seconds =========================== 11/82 Test #11: pylada.crystal.structure .................. Passed 0.91 sec test 12 Start 12: pylada.crystal.supercell 12: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/crystal/tests/test_supercell.py" 12: Test timeout computed to be: 10000000 12: ============================= test session starts ============================== 12: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 12: rootdir: $SRC_DIR 12: plugins: bdd-3.1.0 12: collected 2 items 12: 12: ../../python_package/pylada/crystal/tests/test_supercell.py .. [100%] 12: 12: =========================== 2 passed in 2.18 seconds =========================== 12/82 Test #12: pylada.crystal.supercell .................. Passed 2.70 sec test 13 Start 13: pylada.crystal.third_order 13: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/crystal/tests/test_third_order.py" 13: Test timeout computed to be: 10000000 13: ============================= test session starts ============================== 13: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 13: rootdir: $SRC_DIR 13: plugins: bdd-3.1.0 13: collected 10 items 13: 13: ../../python_package/pylada/crystal/tests/test_third_order.py .......... [100%] 13: 13: =============================== warnings summary =============================== 13: build/python_package/pylada/crystal/tests/test_third_order.py::test_third_order_regression[cell0] 13: $SRC_DIR/build/python_package/pylada/crystal/defects/__init__.py:51: DeprecationWarning: invalid escape sequence \: 13: """ 13: 13: build/python_package/pylada/crystal/tests/test_third_order.py::test_third_order_regression[cell0] 13: $SRC_DIR/build/python_package/pylada/crystal/defects/__init__.py:125: DeprecationWarning: invalid escape sequence \: 13: """ 13: 13: -- Docs: https://docs.pytest.org/en/latest/warnings.html 13: ==================== 10 passed, 2 warnings in 2.00 seconds ===================== 13/82 Test #13: pylada.crystal.third_order ................ Passed 2.56 sec test 14 Start 14: pylada.crystal.utilities 14: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/crystal/tests/test_utilities.py" 14: Test timeout computed to be: 10000000 14: ============================= test session starts ============================== 14: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 14: rootdir: $SRC_DIR 14: plugins: bdd-3.1.0 14: collected 4 items 14: 14: ../../python_package/pylada/crystal/tests/test_utilities.py .... [100%] 14: 14: =========================== 4 passed in 0.48 seconds =========================== 14/82 Test #14: pylada.crystal.utilities .................. Passed 1.10 sec test 15 Start 15: pylada.crystal.which_site 15: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/crystal/tests/test_which_site.py" 15: Test timeout computed to be: 10000000 15: ============================= test session starts ============================== 15: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 15: rootdir: $SRC_DIR 15: plugins: bdd-3.1.0 15: collected 2 items 15: 15: ../../python_package/pylada/crystal/tests/test_which_site.py .. [100%] 15: 15: =========================== 2 passed in 0.34 seconds =========================== 15/82 Test #15: pylada.crystal.which_site ................. Passed 0.85 sec test 16 Start 16: pylada.crystal.write_gulp 16: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/crystal/tests/test_write_gulp.py" 16: Test timeout computed to be: 10000000 16: ============================= test session starts ============================== 16: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 16: rootdir: $SRC_DIR 16: plugins: bdd-3.1.0 16: collected 1 item 16: 16: ../../python_package/pylada/crystal/tests/test_write_gulp.py . [100%] 16: 16: =========================== 1 passed in 0.98 seconds =========================== 16/82 Test #16: pylada.crystal.write_gulp ................. Passed 1.51 sec test 17 Start 17: pylada.tools.input.keywords 17: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/tools/input/tests/test_keywords.py" 17: Test timeout computed to be: 10000000 17: ============================= test session starts ============================== 17: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 17: rootdir: $SRC_DIR 17: plugins: bdd-3.1.0 17: collected 6 items 17: 17: ../../../python_package/pylada/tools/input/tests/test_keywords.py ...... [100%] 17: 17: =========================== 6 passed in 0.50 seconds =========================== 17/82 Test #17: pylada.tools.input.keywords ............... Passed 1.02 sec test 18 Start 18: pylada.tools.input.listblock 18: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/tools/input/tests/test_listblock.py" 18: Test timeout computed to be: 10000000 18: ============================= test session starts ============================== 18: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 18: rootdir: $SRC_DIR 18: plugins: bdd-3.1.0 18: collected 1 item 18: 18: ../../../python_package/pylada/tools/input/tests/test_listblock.py . [100%] 18: 18: =========================== 1 passed in 0.30 seconds =========================== 18/82 Test #18: pylada.tools.input.listblock .............. Passed 0.80 sec test 19 Start 19: pylada.tools.input.tree 19: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/tools/input/tests/test_tree.py" 19: Test timeout computed to be: 10000000 19: ============================= test session starts ============================== 19: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 19: rootdir: $SRC_DIR 19: plugins: bdd-3.1.0 19: collected 1 item 19: 19: ../../../python_package/pylada/tools/input/tests/test_tree.py . [100%] 19: 19: =========================== 1 passed in 0.30 seconds =========================== 19/82 Test #19: pylada.tools.input.tree ................... Passed 0.79 sec test 20 Start 20: pylada.tools.makeclass 20: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/tools/tests/test_makeclass.py" 20: Test timeout computed to be: 10000000 20: ============================= test session starts ============================== 20: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 20: rootdir: $SRC_DIR 20: plugins: bdd-3.1.0 20: collected 1 item 20: 20: ../../python_package/pylada/tools/tests/test_makeclass.py . [100%] 20: 20: =========================== 1 passed in 0.30 seconds =========================== 20/82 Test #20: pylada.tools.makeclass .................... Passed 0.81 sec test 21 Start 21: pylada.ewald.ewald 21: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/ewald/tests/test_ewald.py" 21: Test timeout computed to be: 10000000 21: ============================= test session starts ============================== 21: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 21: rootdir: $SRC_DIR 21: plugins: bdd-3.1.0 21: collected 1 item 21: 21: ../../python_package/pylada/ewald/tests/test_ewald.py . [100%] 21: 21: =========================== 1 passed in 6.54 seconds =========================== 21/82 Test #21: pylada.ewald.ewald ........................ Passed 7.04 sec test 22 Start 22: pylada.decorations.defects 22: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/decorations/tests/test_defects.py" 22: Test timeout computed to be: 10000000 22: ============================= test session starts ============================== 22: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 22: rootdir: $SRC_DIR 22: plugins: bdd-3.1.0 22: collected 2 items 22: 22: ../../python_package/pylada/decorations/tests/test_defects.py .s [100%] 22: 22: ===================== 1 passed, 1 skipped in 0.29 seconds ====================== 22/82 Test #22: pylada.decorations.defects ................ Passed 0.79 sec test 23 Start 23: pylada.decorations.fciterator 23: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/decorations/tests/test_fciterator.py" 23: Test timeout computed to be: 10000000 23: ============================= test session starts ============================== 23: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 23: rootdir: $SRC_DIR 23: plugins: bdd-3.1.0 23: collected 1 item 23: 23: ../../python_package/pylada/decorations/tests/test_fciterator.py . [100%] 23: 23: =========================== 1 passed in 0.28 seconds =========================== 23/82 Test #23: pylada.decorations.fciterator ............. Passed 0.79 sec test 24 Start 24: pylada.decorations.generator 24: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/decorations/tests/test_generator.py" 24: Test timeout computed to be: 10000000 24: ============================= test session starts ============================== 24: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 24: rootdir: $SRC_DIR 24: plugins: bdd-3.1.0 24: collected 35 items 24: 24: ../../python_package/pylada/decorations/tests/test_generator.py ........ [ 22%] 24: ........................... [100%] 24: 24: ========================== 35 passed in 54.26 seconds ========================== 24/82 Test #24: pylada.decorations.generator .............. Passed 54.84 sec test 25 Start 25: pylada.decorations.lexcompare 25: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/decorations/tests/test_lexcompare.py" 25: Test timeout computed to be: 10000000 25: ============================= test session starts ============================== 25: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 25: rootdir: $SRC_DIR 25: plugins: bdd-3.1.0 25: collected 1 item 25: 25: ../../python_package/pylada/decorations/tests/test_lexcompare.py . [100%] 25: 25: =========================== 1 passed in 0.31 seconds =========================== 25/82 Test #25: pylada.decorations.lexcompare ............. Passed 0.82 sec test 26 Start 26: pylada.decorations.ndimiterator 26: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/decorations/tests/test_ndimiterator.py" 26: Test timeout computed to be: 10000000 26: ============================= test session starts ============================== 26: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 26: rootdir: $SRC_DIR 26: plugins: bdd-3.1.0 26: collected 2 items 26: 26: ../../python_package/pylada/decorations/tests/test_ndimiterator.py .. [100%] 26: 26: =========================== 2 passed in 0.30 seconds =========================== 26/82 Test #26: pylada.decorations.ndimiterator ........... Passed 0.82 sec test 27 Start 27: pylada.decorations.supercells 27: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/decorations/tests/test_supercells.py" 27: Test timeout computed to be: 10000000 27: ============================= test session starts ============================== 27: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 27: rootdir: $SRC_DIR 27: plugins: bdd-3.1.0 27: collected 3 items 27: 27: ../../python_package/pylada/decorations/tests/test_supercells.py ... [100%] 27: 27: ========================== 3 passed in 15.09 seconds =========================== 27/82 Test #27: pylada.decorations.supercells ............. Passed 15.62 sec test 28 Start 28: pylada.decorations.transform 28: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/decorations/tests/test_transform.py" 28: Test timeout computed to be: 10000000 28: ============================= test session starts ============================== 28: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 28: rootdir: $SRC_DIR 28: plugins: bdd-3.1.0 28: collected 39 items 28: 28: ../../python_package/pylada/decorations/tests/test_transform.py ........ [ 20%] 28: ............................... [100%] 28: 28: ========================== 39 passed in 65.01 seconds ========================== 28/82 Test #28: pylada.decorations.transform .............. Passed 65.55 sec test 29 Start 29: pylada.vasp.incar.choices 29: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/vasp/incar/tests/test_choices.py" 29: Test timeout computed to be: 10000000 29: ============================= test session starts ============================== 29: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 29: rootdir: $SRC_DIR 29: plugins: bdd-3.1.0 29: collected 27 items 29: 29: ../../../python_package/pylada/vasp/incar/tests/test_choices.py ........ [ 29%] 29: ................... [100%] 29: 29: =============================== warnings summary =============================== 29: build/python_package/pylada/vasp/incar/tests/test_choices.py::test_interchangeable[a-A] 29: $SRC_DIR/build/python_package/pylada/vasp/incar/_params.py:1018: DeprecationWarning: invalid escape sequence \s 29: cellshape = re.search("cell(\s+|-|_)?(?:shape)?", dof) is not None 29: 29: -- Docs: https://docs.pytest.org/en/latest/warnings.html 29: ==================== 27 passed, 1 warnings in 0.34 seconds ===================== 29/82 Test #29: pylada.vasp.incar.choices ................. Passed 0.83 sec test 30 Start 30: pylada.vasp.incar.incar_algo 30: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/vasp/incar/tests/test_incar_algo.py" 30: Test timeout computed to be: 10000000 30: ============================= test session starts ============================== 30: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 30: rootdir: $SRC_DIR 30: plugins: bdd-3.1.0 30: collected 1 item 30: 30: ../../../python_package/pylada/vasp/incar/tests/test_incar_algo.py . [100%] 30: 30: =========================== 1 passed in 0.30 seconds =========================== 30/82 Test #30: pylada.vasp.incar.incar_algo .............. Passed 0.78 sec test 31 Start 31: pylada.vasp.incar.magmom 31: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/vasp/incar/tests/test_magmom.py" 31: Test timeout computed to be: 10000000 31: ============================= test session starts ============================== 31: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 31: rootdir: $SRC_DIR 31: plugins: bdd-3.1.0 31: collected 1 item 31: 31: ../../../python_package/pylada/vasp/incar/tests/test_magmom.py . [100%] 31: 31: =========================== 1 passed in 0.29 seconds =========================== 31/82 Test #31: pylada.vasp.incar.magmom .................. Passed 0.80 sec test 32 Start 32: pylada.vasp.incar.nelect 32: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/vasp/incar/tests/test_nelect.py" 32: Test timeout computed to be: 10000000 32: ============================= test session starts ============================== 32: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 32: rootdir: $SRC_DIR 32: plugins: bdd-3.1.0 32: collected 1 item 32: 32: ../../../python_package/pylada/vasp/incar/tests/test_nelect.py . [100%] 32: 32: =========================== 1 passed in 0.29 seconds =========================== 32/82 Test #32: pylada.vasp.incar.nelect .................. Passed 0.78 sec test 33 Start 33: pylada.vasp.incar.npar 33: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/vasp/incar/tests/test_npar.py" 33: Test timeout computed to be: 10000000 33: ============================= test session starts ============================== 33: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 33: rootdir: $SRC_DIR 33: plugins: bdd-3.1.0 33: collected 1 item 33: 33: ../../../python_package/pylada/vasp/incar/tests/test_npar.py . [100%] 33: 33: =========================== 1 passed in 0.29 seconds =========================== 33/82 Test #33: pylada.vasp.incar.npar .................... Passed 0.78 sec test 34 Start 34: pylada.vasp.incar.others 34: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/vasp/incar/tests/test_others.py" 34: Test timeout computed to be: 10000000 34: ============================= test session starts ============================== 34: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 34: rootdir: $SRC_DIR 34: plugins: bdd-3.1.0 34: collected 4 items 34: 34: ../../../python_package/pylada/vasp/incar/tests/test_others.py .... [100%] 34: 34: =========================== 4 passed in 0.35 seconds =========================== 34/82 Test #34: pylada.vasp.incar.others .................. Passed 0.86 sec test 35 Start 35: pylada.vasp.incar.relax 35: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/vasp/incar/tests/test_relax.py" 35: Test timeout computed to be: 10000000 35: ============================= test session starts ============================== 35: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 35: rootdir: $SRC_DIR 35: plugins: bdd-3.1.0 35: collected 1 item 35: 35: ../../../python_package/pylada/vasp/incar/tests/test_relax.py . [100%] 35: 35: =========================== 1 passed in 0.31 seconds =========================== 35/82 Test #35: pylada.vasp.incar.relax ................... Passed 0.89 sec test 36 Start 36: pylada.vasp.incar.restart 36: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/vasp/incar/tests/test_restart.py" 36: Test timeout computed to be: 10000000 36: ============================= test session starts ============================== 36: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 36: rootdir: $SRC_DIR 36: plugins: bdd-3.1.0 36: collected 2 items 36: 36: ../../../python_package/pylada/vasp/incar/tests/test_restart.py .. [100%] 36: 36: =========================== 2 passed in 0.39 seconds =========================== 36/82 Test #36: pylada.vasp.incar.restart ................. Passed 0.93 sec test 37 Start 37: pylada.vasp.incar.smearing 37: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/vasp/incar/tests/test_smearing.py" 37: Test timeout computed to be: 10000000 37: ============================= test session starts ============================== 37: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 37: rootdir: $SRC_DIR 37: plugins: bdd-3.1.0 37: collected 1 item 37: 37: ../../../python_package/pylada/vasp/incar/tests/test_smearing.py . [100%] 37: 37: =========================== 1 passed in 0.33 seconds =========================== 37/82 Test #37: pylada.vasp.incar.smearing ................ Passed 0.83 sec test 38 Start 38: pylada.vasp.incar.uparams 38: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/vasp/incar/tests/test_uparams.py" 38: Test timeout computed to be: 10000000 38: ============================= test session starts ============================== 38: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 38: rootdir: $SRC_DIR 38: plugins: bdd-3.1.0 38: collected 1 item 38: 38: ../../../python_package/pylada/vasp/incar/tests/test_uparams.py . [100%] 38: 38: =========================== 1 passed in 0.29 seconds =========================== 38/82 Test #38: pylada.vasp.incar.uparams ................. Passed 0.81 sec test 39 Start 39: pylada.vasp.extract.common 39: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/vasp/extract/tests/test_common.py" 39: Test timeout computed to be: 10000000 39: ============================= test session starts ============================== 39: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 39: rootdir: $SRC_DIR 39: plugins: bdd-3.1.0 39: collected 1 item 39: 39: ../../../python_package/pylada/vasp/extract/tests/test_common.py . [100%] 39: 39: =============================== warnings summary =============================== 39: build/python_package/pylada/vasp/extract/tests/test_common.py::test_common 39: $SRC_DIR/build/python_package/pylada/misc/relativepath.py:213: DeprecationWarning: inspect.getargspec() is deprecated, use inspect.signature() or inspect.getfullargspec() 39: N = len(getargspec(value)[0]) 39: 39: -- Docs: https://docs.pytest.org/en/latest/warnings.html 39: ===================== 1 passed, 1 warnings in 0.37 seconds ===================== 39/82 Test #39: pylada.vasp.extract.common ................ Passed 0.86 sec test 40 Start 40: pylada.vasp.extract.dft 40: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/vasp/extract/tests/test_dft.py" 40: Test timeout computed to be: 10000000 40: ============================= test session starts ============================== 40: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 40: rootdir: $SRC_DIR 40: plugins: bdd-3.1.0 40: collected 1 item 40: 40: ../../../python_package/pylada/vasp/extract/tests/test_dft.py . [100%] 40: 40: =============================== warnings summary =============================== 40: build/python_package/pylada/vasp/extract/tests/test_dft.py::test_dft 40: $SRC_DIR/build/python_package/pylada/misc/relativepath.py:213: DeprecationWarning: inspect.getargspec() is deprecated, use inspect.signature() or inspect.getfullargspec() 40: N = len(getargspec(value)[0]) 40: 40: -- Docs: https://docs.pytest.org/en/latest/warnings.html 40: ===================== 1 passed, 1 warnings in 0.38 seconds ===================== 40/82 Test #40: pylada.vasp.extract.dft ................... Passed 0.86 sec test 41 Start 41: pylada.vasp.algo 41: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/vasp/tests/test_algo.py" 41: Test timeout computed to be: 10000000 41: ============================= test session starts ============================== 41: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 41: rootdir: $SRC_DIR 41: plugins: bdd-3.1.0 41: collected 1 item 41: 41: ../../python_package/pylada/vasp/tests/test_algo.py . [100%] 41: 41: =========================== 1 passed in 0.30 seconds =========================== 41/82 Test #41: pylada.vasp.algo .......................... Passed 0.79 sec test 42 Start 42: pylada.vasp.copyfiles 42: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/vasp/tests/test_copyfiles.py" 42: Test timeout computed to be: 10000000 42: ============================= test session starts ============================== 42: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 42: rootdir: $SRC_DIR 42: plugins: bdd-3.1.0 42: collected 1 item 42: 42: ../../python_package/pylada/vasp/tests/test_copyfiles.py . [100%] 42: 42: =========================== 1 passed in 0.31 seconds =========================== 42/82 Test #42: pylada.vasp.copyfiles ..................... Passed 0.81 sec test 43 Start 43: pylada.vasp.ediff 43: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/vasp/tests/test_ediff.py" 43: Test timeout computed to be: 10000000 43: ============================= test session starts ============================== 43: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 43: rootdir: $SRC_DIR 43: plugins: bdd-3.1.0 43: collected 2 items 43: 43: ../../python_package/pylada/vasp/tests/test_ediff.py .. [100%] 43: 43: =========================== 2 passed in 0.36 seconds =========================== 43/82 Test #43: pylada.vasp.ediff ......................... Passed 0.90 sec test 44 Start 44: pylada.vasp.encut 44: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/vasp/tests/test_encut.py" 44: Test timeout computed to be: 10000000 44: ============================= test session starts ============================== 44: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 44: rootdir: $SRC_DIR 44: plugins: bdd-3.1.0 44: collected 1 item 44: 44: ../../python_package/pylada/vasp/tests/test_encut.py . [100%] 44: 44: =========================== 1 passed in 0.41 seconds =========================== 44/82 Test #44: pylada.vasp.encut ......................... Passed 0.92 sec test 45 Start 45: pylada.vasp.incar 45: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/vasp/tests/test_incar.py" 45: Test timeout computed to be: 10000000 45: ============================= test session starts ============================== 45: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 45: rootdir: $SRC_DIR 45: plugins: bdd-3.1.0 45: collected 2 items 45: 45: ../../python_package/pylada/vasp/tests/test_incar.py .. [100%] 45: 45: =========================== 2 passed in 0.35 seconds =========================== 45/82 Test #45: pylada.vasp.incar ......................... Passed 0.89 sec test 46 Start 46: pylada.vasp.lsorbit 46: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/vasp/tests/test_lsorbit.py" 46: Test timeout computed to be: 10000000 46: ============================= test session starts ============================== 46: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 46: rootdir: $SRC_DIR 46: plugins: bdd-3.1.0 46: collected 1 item 46: 46: ../../python_package/pylada/vasp/tests/test_lsorbit.py . [100%] 46: 46: =========================== 1 passed in 0.40 seconds =========================== 46/82 Test #46: pylada.vasp.lsorbit ....................... Passed 0.92 sec test 47 Start 47: pylada.vasp.magmom_attribute 47: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/vasp/tests/test_magmom_attribute.py" 47: Test timeout computed to be: 10000000 47: ============================= test session starts ============================== 47: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 47: rootdir: $SRC_DIR 47: plugins: bdd-3.1.0 47: collected 8 items 47: 47: ../../python_package/pylada/vasp/tests/test_magmom_attribute.py ........ [100%] 47: 47: =========================== 8 passed in 0.34 seconds =========================== 47/82 Test #47: pylada.vasp.magmom_attribute .............. Passed 0.86 sec test 48 Start 48: pylada.vasp.parse 48: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/vasp/tests/test_parse.py" 48: Test timeout computed to be: 10000000 48: ============================= test session starts ============================== 48: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 48: rootdir: $SRC_DIR 48: plugins: bdd-3.1.0 48: collected 1 item 48: 48: ../../python_package/pylada/vasp/tests/test_parse.py . [100%] 48: 48: =========================== 1 passed in 0.30 seconds =========================== 48/82 Test #48: pylada.vasp.parse ......................... Passed 0.81 sec test 49 Start 49: pylada.vasp.relax_attribute 49: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/vasp/tests/test_relax_attribute.py" 49: Test timeout computed to be: 10000000 49: ============================= test session starts ============================== 49: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 49: rootdir: $SRC_DIR 49: plugins: bdd-3.1.0 49: collected 13 items 49: 49: ../../python_package/pylada/vasp/tests/test_relax_attribute.py ......... [ 69%] 49: .... [100%] 49: 49: ========================== 13 passed in 0.35 seconds =========================== 49/82 Test #49: pylada.vasp.relax_attribute ............... Passed 0.88 sec test 50 Start 50: pylada.vasp.run 50: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/vasp/tests/test_run.py" 50: Test timeout computed to be: 10000000 50: ============================= test session starts ============================== 50: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 50: rootdir: $SRC_DIR 50: plugins: bdd-3.1.0 50: collected 1 item 50: 50: ../../python_package/pylada/vasp/tests/test_run.py s [100%] 50: 50: ========================== 1 skipped in 0.29 seconds =========================== 50/82 Test #50: pylada.vasp.run ........................... Passed 0.82 sec test 51 Start 51: pylada.vasp.runepi 51: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/vasp/tests/test_runepi.py" 51: Test timeout computed to be: 10000000 51: ============================= test session starts ============================== 51: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 51: rootdir: $SRC_DIR 51: plugins: bdd-3.1.0 51: collected 1 item 51: 51: ../../python_package/pylada/vasp/tests/test_runepi.py s [100%] 51: 51: ========================== 1 skipped in 0.29 seconds =========================== 51/82 Test #51: pylada.vasp.runepi ........................ Passed 0.81 sec test 52 Start 52: pylada.vasp.runepidoc 52: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/vasp/tests/test_runepidoc.py" 52: Test timeout computed to be: 10000000 52: ============================= test session starts ============================== 52: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 52: rootdir: $SRC_DIR 52: plugins: bdd-3.1.0 52: collected 1 item 52: 52: ../../python_package/pylada/vasp/tests/test_runepidoc.py s [100%] 52: 52: ========================== 1 skipped in 0.31 seconds =========================== 52/82 Test #52: pylada.vasp.runepidoc ..................... Passed 0.82 sec test 53 Start 53: pylada.vasp.runmass 53: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/vasp/tests/test_runmass.py" 53: Test timeout computed to be: 10000000 53: ============================= test session starts ============================== 53: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 53: rootdir: $SRC_DIR 53: plugins: bdd-3.1.0 53: collected 1 item 53: 53: ../../python_package/pylada/vasp/tests/test_runmass.py s [100%] 53: 53: ========================== 1 skipped in 0.30 seconds =========================== 53/82 Test #53: pylada.vasp.runmass ....................... Passed 0.82 sec test 54 Start 54: pylada.vasp.runrelax 54: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/vasp/tests/test_runrelax.py" 54: Test timeout computed to be: 10000000 54: ============================= test session starts ============================== 54: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 54: rootdir: $SRC_DIR 54: plugins: bdd-3.1.0 54: collected 1 item 54: 54: ../../python_package/pylada/vasp/tests/test_runrelax.py s [100%] 54: 54: ========================== 1 skipped in 0.31 seconds =========================== 54/82 Test #54: pylada.vasp.runrelax ...................... Passed 0.82 sec test 55 Start 55: pylada.vasp.species 55: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/vasp/tests/test_species.py" 55: Test timeout computed to be: 10000000 55: ============================= test session starts ============================== 55: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 55: rootdir: $SRC_DIR 55: plugins: bdd-3.1.0 55: collected 4 items 55: 55: ../../python_package/pylada/vasp/tests/test_species.py .... [100%] 55: 55: =========================== 4 passed in 0.31 seconds =========================== 55/82 Test #55: pylada.vasp.species ....................... Passed 0.82 sec test 56 Start 56: pylada.vasp.system 56: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/vasp/tests/test_system.py" 56: Test timeout computed to be: 10000000 56: ============================= test session starts ============================== 56: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 56: rootdir: $SRC_DIR 56: plugins: bdd-3.1.0 56: collected 1 item 56: 56: ../../python_package/pylada/vasp/tests/test_system.py . [100%] 56: 56: =========================== 1 passed in 0.29 seconds =========================== 56/82 Test #56: pylada.vasp.system ........................ Passed 0.79 sec test 57 Start 57: pylada.vasp.uparams_attribute 57: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/vasp/tests/test_uparams_attribute.py" 57: Test timeout computed to be: 10000000 57: ============================= test session starts ============================== 57: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 57: rootdir: $SRC_DIR 57: plugins: bdd-3.1.0 57: collected 7 items 57: 57: ../../python_package/pylada/vasp/tests/test_uparams_attribute.py ....... [100%] 57: 57: =========================== 7 passed in 0.34 seconds =========================== 57/82 Test #57: pylada.vasp.uparams_attribute ............. Passed 0.82 sec test 58 Start 58: pylada.vasp.vasp_keywords 58: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/vasp/tests/test_vasp_keywords.py" 58: Test timeout computed to be: 10000000 58: ============================= test session starts ============================== 58: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 58: rootdir: $SRC_DIR 58: plugins: bdd-3.1.0 58: collected 12 items 58: 58: ../../python_package/pylada/vasp/tests/test_vasp_keywords.py ........... [ 91%] 58: . [100%] 58: 58: =============================== warnings summary =============================== 58: $SRC_DIR/build/python_package/pylada/vasp/tests/test_vasp_keywords.py:264 58: $SRC_DIR/build/python_package/pylada/vasp/tests/test_vasp_keywords.py:264: DeprecationWarning: invalid escape sequence \s 58: assert search("(^|\n)ATTRIBUTE\s*=\s*" + strval + "\n", text) is not None 58: 58: -- Docs: https://docs.pytest.org/en/latest/warnings.html 58: ==================== 12 passed, 1 warnings in 0.45 seconds ===================== 58/82 Test #58: pylada.vasp.vasp_keywords ................. Passed 1.02 sec test 59 Start 59: pylada.vasp.vasp_nelect 59: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/vasp/tests/test_vasp_nelect.py" 59: Test timeout computed to be: 10000000 59: ============================= test session starts ============================== 59: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 59: rootdir: $SRC_DIR 59: plugins: bdd-3.1.0 59: collected 1 item 59: 59: ../../python_package/pylada/vasp/tests/test_vasp_nelect.py . [100%] 59: 59: =========================== 1 passed in 0.31 seconds =========================== 59/82 Test #59: pylada.vasp.vasp_nelect ................... Passed 0.81 sec test 60 Start 60: pylada.vasp.vasp_restart 60: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/vasp/tests/test_vasp_restart.py" 60: Test timeout computed to be: 10000000 60: ============================= test session starts ============================== 60: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 60: rootdir: $SRC_DIR 60: plugins: bdd-3.1.0 60: collected 3 items 60: 60: ../../python_package/pylada/vasp/tests/test_vasp_restart.py ... [100%] 60: 60: =========================== 3 passed in 3.30 seconds =========================== 60/82 Test #60: pylada.vasp.vasp_restart .................. Passed 3.82 sec test 61 Start 61: pifunctional 61: Test command: $BUILD_PREFIX/bin/mpiexec "-n" "4" "$SRC_DIR/build/python_package/pylada/process/tests/pifunctional.py" "--order" "4" 61: Test timeout computed to be: 10000000 61: -------------------------------------------------------------------------- 61: There are not enough slots available in the system to satisfy the 4 61: slots that were requested by the application: 61: 61: $SRC_DIR/build/python_package/pylada/process/tests/pifunctional.py 61: 61: Either request fewer slots for your application, or make more slots 61: available for use. 61: 61: A "slot" is the Open MPI term for an allocatable unit where we can 61: launch a process. The number of slots available are defined by the 61: environment in which Open MPI processes are run: 61: 61: 1. Hostfile, via "slots=N" clauses (N defaults to number of 61: processor cores if not provided) 61: 2. The --host command line parameter, via a ":N" suffix on the 61: hostname (N defaults to 1 if not provided) 61: 3. Resource manager (e.g., SLURM, PBS/Torque, LSF, etc.) 61: 4. If none of a hostfile, the --host command line parameter, or an 61: RM is present, Open MPI defaults to the number of processor cores 61: 61: In all the above cases, if you want Open MPI to default to the number 61: of hardware threads instead of the number of processor cores, use the 61: --use-hwthread-cpus option. 61: 61: Alternatively, you can use the --oversubscribe option to ignore the 61: number of available slots when deciding the number of processes to 61: launch. 61: -------------------------------------------------------------------------- 61/82 Test #61: pifunctional ..............................***Failed 0.02 sec test 62 Start 62: pylada.process.call 62: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/process/tests/test_call.py" 62: Test timeout computed to be: 10000000 62: ============================= test session starts ============================== 62: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 62: rootdir: $SRC_DIR 62: plugins: bdd-3.1.0 62: collected 3 items 62: 62: ../../python_package/pylada/process/tests/test_call.py F.F [100%] 62: 62: =================================== FAILURES =================================== 62: ___________________________ test_process_functional ____________________________ 62: 62: executable = '$SRC_DIR/build/python_package/pylada/process/tests/pifunctional.py' 62: comm = {'n': 4, 'placement': '', 'ppn': 4} 62: tmpdir = local('/tmp/pytest-of-travis/pytest-2/test_process_functional0') 62: 62: @mpi4py_required 62: def test_process_functional(executable, comm, tmpdir): 62: """Tests CallProcess. 62: 62: Includes failure modes. 62: """ 62: from pytest import raises 62: from numpy import all, arange, abs, array 62: from pylada.process.call import CallProcess 62: from pylada.process import NotStarted 62: from pylada.process.tests.functional import Functional 62: 62: functional = Functional(executable, list(range(8))) 62: program = CallProcess(functional, outdir=str(tmpdir), dompi=False) 62: # program not started. should fail. 62: with raises(NotStarted): 62: program.poll() 62: 62: with raises(NotStarted): 62: program.wait() 62: 62: # now starting for real. 62: assert program.start(comm) == False 62: assert program.process is not None 62: > while not program.poll(): 62: 62: ../../python_package/pylada/process/tests/test_call.py:52: 62: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 62: 62: self = 62: 62: def poll(self): 62: """ Polls current job. """ 62: from . import Fail 62: 62: # checks whether program was already started or not. 62: if super(CallProcess, self).poll(): 62: return True 62: 62: # check whether functional is set. 62: if self.functional is None: 62: return True 62: # check if we have currently running process. 62: # if current process is finished running, closes stdout and stdout. 62: try: 62: if self.process.poll() == False: 62: return False 62: except Fail: 62: self._cleanup() 62: if hasattr(self.functional, 'Extract') \ 62: and self.functional.Extract(self.outdir).success: 62: return True 62: else: 62: self._cleanup() 62: if not hasattr(self.functional, 'Extract'): 62: return True 62: if self.functional.Extract(self.outdir).success: 62: return True 62: # at this point, an error must have occured. 62: self.nberrors += 1 62: if self.nberrors >= self.maxtrials: 62: > raise Fail() 62: E pylada.process.Fail 62: 62: ../../python_package/pylada/process/call.py:115: Fail 62: ----------------------------- Captured stderr call ----------------------------- 62: Traceback (most recent call last): 62: File "/tmp/pytest-of-travis/pytest-2/test_process_functional0/tmplcl_7wy8.py", line 7, in 62: functional(**params) 62: File "$SRC_DIR/build/python_package/pylada/process/tests/functional.py", line 181, in __call__ 62: program.wait() 62: File "$SRC_DIR/build/python_package/pylada/process/program.py", line 353, in wait 62: self.poll() 62: File "$SRC_DIR/build/python_package/pylada/process/program.py", line 231, in poll 62: raise Fail(poll) 62: pylada.process.Fail: 1 62: _____________________________ test_full_execution ______________________________ 62: 62: executable = '$SRC_DIR/build/python_package/pylada/process/tests/pifunctional.py' 62: tmpdir = local('/tmp/pytest-of-travis/pytest-2/test_full_execution0') 62: comm = {'n': 4, 'placement': '', 'ppn': 4} 62: 62: @mpi4py_required 62: def test_full_execution(executable, tmpdir, comm): 62: from pylada.process.call import CallProcess 62: from pylada.process.tests.functional import Functional 62: functional = Functional(executable, [50]) 62: program = CallProcess(functional, outdir=str(tmpdir), dompi=False) 62: program.start(comm) 62: > program.wait() 62: 62: ../../python_package/pylada/process/tests/test_call.py:114: 62: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 62: ../../python_package/pylada/process/call.py:194: in wait 62: while self.poll() == False: 62: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 62: 62: self = 62: 62: def poll(self): 62: """ Polls current job. """ 62: from . import Fail 62: 62: # checks whether program was already started or not. 62: if super(CallProcess, self).poll(): 62: return True 62: 62: # check whether functional is set. 62: if self.functional is None: 62: return True 62: # check if we have currently running process. 62: # if current process is finished running, closes stdout and stdout. 62: try: 62: if self.process.poll() == False: 62: return False 62: except Fail: 62: self._cleanup() 62: if hasattr(self.functional, 'Extract') \ 62: and self.functional.Extract(self.outdir).success: 62: return True 62: else: 62: self._cleanup() 62: if not hasattr(self.functional, 'Extract'): 62: return True 62: if self.functional.Extract(self.outdir).success: 62: return True 62: # at this point, an error must have occured. 62: self.nberrors += 1 62: if self.nberrors >= self.maxtrials: 62: > raise Fail() 62: E pylada.process.Fail 62: 62: ../../python_package/pylada/process/call.py:115: Fail 62: ----------------------------- Captured stderr call ----------------------------- 62: Traceback (most recent call last): 62: File "/tmp/pytest-of-travis/pytest-2/test_full_execution0/tmpm2ggzi9b.py", line 7, in 62: functional(**params) 62: File "$SRC_DIR/build/python_package/pylada/process/tests/functional.py", line 181, in __call__ 62: program.wait() 62: File "$SRC_DIR/build/python_package/pylada/process/program.py", line 353, in wait 62: self.poll() 62: File "$SRC_DIR/build/python_package/pylada/process/program.py", line 231, in poll 62: raise Fail(poll) 62: pylada.process.Fail: 1 62: =============================== warnings summary =============================== 62: build/python_package/pylada/process/tests/test_call.py::test_process_functional 62: $SRC_DIR/build/python_package/pylada/process/tests/functional.py:48: DeprecationWarning: invalid escape sequence \d 62: regex = search("pi to order (\d+) is approximately (\S+), " 62: 62: build/python_package/pylada/process/tests/test_call.py::test_process_functional 62: $SRC_DIR/build/python_package/pylada/process/tests/functional.py:49: DeprecationWarning: invalid escape sequence \S 62: "Error is (\S+) " 62: 62: build/python_package/pylada/process/tests/test_call.py::test_process_functional 62: $SRC_DIR/build/python_package/pylada/process/tests/functional.py:50: DeprecationWarning: invalid escape sequence \s 62: "\s*-- slept (\S+) seconds at each iteration -- " 62: 62: build/python_package/pylada/process/tests/test_call.py::test_process_functional 62: $SRC_DIR/build/python_package/pylada/process/tests/functional.py:51: DeprecationWarning: invalid escape sequence \s 62: "\s*mpi world size is (\d+)", line) 62: 62: -- Docs: https://docs.pytest.org/en/latest/warnings.html 62: ================ 2 failed, 1 passed, 4 warnings in 1.67 seconds ================ 62/82 Test #62: pylada.process.call .......................***Failed 2.29 sec test 63 Start 63: pylada.process.iterator 63: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/process/tests/test_iterator.py" 63: Test timeout computed to be: 10000000 63: ============================= test session starts ============================== 63: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 63: rootdir: $SRC_DIR 63: plugins: bdd-3.1.0 63: collected 3 items 63: 63: ../../python_package/pylada/process/tests/test_iterator.py F.F [100%] 63: 63: =================================== FAILURES =================================== 63: ________________________________ test_iterator _________________________________ 63: 63: executable = '$SRC_DIR/build/python_package/pylada/process/tests/pifunctional.py' 63: tmpdir = local('/tmp/pytest-of-travis/pytest-3/test_iterator0') 63: comm = {'n': 4, 'placement': '', 'ppn': 4} 63: 63: @mpi4py_required 63: def test_iterator(executable, tmpdir, comm): 63: """Tests IteratorProcess. 63: 63: Includes failure modes. 63: """ 63: from pytest import raises 63: from numpy import all, arange, abs, array 63: from pylada.process.iterator import IteratorProcess 63: from pylada.process import Fail, NotStarted 63: from pylada.process.tests.functional import Functional 63: 63: functional = Functional(executable, list(range(8))) 63: program = IteratorProcess(functional, outdir=str(tmpdir)) 63: # program not started. should fail. 63: with raises(NotStarted): 63: program.poll() 63: 63: with raises(NotStarted): 63: program.wait() 63: 63: # now starting for real. 63: program.start(comm) 63: > while not program.poll(): 63: 63: ../../python_package/pylada/process/tests/test_iterator.py:51: 63: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 63: ../../python_package/pylada/process/iterator.py:188: in poll 63: else Fail(str(found_error)) 63: ../../python_package/pylada/process/iterator.py:173: in poll 63: if self.process.poll() == False: 63: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 63: 63: self = 63: 63: def poll(self): 63: """ Polls current job. 63: 63: :returns: True if external program is finished. 63: :raises Fail: If external program returns a non-zero exit code. 63: """ 63: from . import Fail 63: if super(ProgramProcess, self).poll(): 63: return True 63: # check if we have currently running process. 63: # if current process is finished running, closes stdout and stdout. 63: poll = self.process.poll() 63: if poll is None: 63: return False 63: # call callback. 63: logger.debug("program has onfinish %s", self.onfinish is not None) 63: if self.onfinish is not None: 63: try: 63: self.onfinish(process=self, error=(poll != 0)) 63: except Exception as e: 63: import sys 63: import traceback 63: exc_type, exc_value, exc_traceback = sys.exc_info() 63: tb = traceback.format_tb(exc_traceback) 63: self._cleanup() 63: raise Fail('Error on call to "onfinish"\n{0}: {1}\n{2}\n' 63: .format(type(e), e, '\n'.join(tb))) 63: # now check possible error. 63: if poll != 0 and self.onfail is not None: 63: try: 63: self.onfail(process=self, error=poll) 63: except Fail: 63: pass 63: else: 63: poll = 0 63: # else: poll = 0 63: if poll != 0: 63: self.nberrors += 1 63: if self.nberrors >= self.maxtrials: 63: self._cleanup() 63: > raise Fail(poll) 63: E pylada.process.Fail: 1 63: 63: ../../python_package/pylada/process/program.py:231: Fail 63: _____________________________ test_full_execution ______________________________ 63: 63: executable = '$SRC_DIR/build/python_package/pylada/process/tests/pifunctional.py' 63: tmpdir = local('/tmp/pytest-of-travis/pytest-3/test_full_execution0') 63: comm = {'n': 4, 'placement': '', 'ppn': 4} 63: 63: @mpi4py_required 63: def test_full_execution(executable, tmpdir, comm): 63: from pylada.process.iterator import IteratorProcess 63: from pylada.process.tests.functional import Functional 63: functional = Functional(executable, [50]) 63: program = IteratorProcess(functional, outdir=str(tmpdir)) 63: program.start(comm) 63: > program.wait() 63: 63: ../../python_package/pylada/process/tests/test_iterator.py:111: 63: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 63: ../../python_package/pylada/process/iterator.py:246: in wait 63: while not self.poll(): 63: ../../python_package/pylada/process/iterator.py:188: in poll 63: else Fail(str(found_error)) 63: ../../python_package/pylada/process/iterator.py:173: in poll 63: if self.process.poll() == False: 63: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 63: 63: self = 63: 63: def poll(self): 63: """ Polls current job. 63: 63: :returns: True if external program is finished. 63: :raises Fail: If external program returns a non-zero exit code. 63: """ 63: from . import Fail 63: if super(ProgramProcess, self).poll(): 63: return True 63: # check if we have currently running process. 63: # if current process is finished running, closes stdout and stdout. 63: poll = self.process.poll() 63: if poll is None: 63: return False 63: # call callback. 63: logger.debug("program has onfinish %s", self.onfinish is not None) 63: if self.onfinish is not None: 63: try: 63: self.onfinish(process=self, error=(poll != 0)) 63: except Exception as e: 63: import sys 63: import traceback 63: exc_type, exc_value, exc_traceback = sys.exc_info() 63: tb = traceback.format_tb(exc_traceback) 63: self._cleanup() 63: raise Fail('Error on call to "onfinish"\n{0}: {1}\n{2}\n' 63: .format(type(e), e, '\n'.join(tb))) 63: # now check possible error. 63: if poll != 0 and self.onfail is not None: 63: try: 63: self.onfail(process=self, error=poll) 63: except Fail: 63: pass 63: else: 63: poll = 0 63: # else: poll = 0 63: if poll != 0: 63: self.nberrors += 1 63: if self.nberrors >= self.maxtrials: 63: self._cleanup() 63: > raise Fail(poll) 63: E pylada.process.Fail: 1 63: 63: ../../python_package/pylada/process/program.py:231: Fail 63: ====================== 2 failed, 1 passed in 0.43 seconds ====================== 63/82 Test #63: pylada.process.iterator ...................***Failed 1.09 sec test 64 Start 64: pylada.process.program 64: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/process/tests/test_program.py" 64: Test timeout computed to be: 10000000 64: ============================= test session starts ============================== 64: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 64: rootdir: $SRC_DIR 64: plugins: bdd-3.1.0 64: collected 4 items 64: 64: ../../python_package/pylada/process/tests/test_program.py F..F [100%] 64: 64: =================================== FAILURES =================================== 64: _________________________________ test_program _________________________________ 64: 64: tmpdir = local('/tmp/pytest-of-travis/pytest-4/test_program0') 64: comm = {'n': 4, 'placement': '', 'ppn': 4} 64: executable = '$SRC_DIR/build/python_package/pylada/process/tests/pifunctional.py' 64: 64: @mpi4py_required 64: def test_program(tmpdir, comm, executable): 64: """ Tests ProgramProcess. Includes failure modes. """ 64: from pytest import raises 64: from pylada.process.program import ProgramProcess 64: from pylada.process import NotStarted 64: from pylada.process.tests.functional import ExtractSingle as Extract 64: 64: stdout = str(tmpdir.join('stdout')) 64: program = ProgramProcess( 64: executable, 64: outdir=str(tmpdir), 64: cmdline=['--sleep', 0, '--order', 4], 64: stdout=stdout, 64: dompi=True) 64: # program not started. should fail. 64: with raises(NotStarted): 64: program.poll() 64: 64: with raises(NotStarted): 64: program.wait() 64: 64: # now starting for real. 64: assert program.start(comm) == False 64: assert program.process is not None 64: > while not program.poll(): 64: 64: ../../python_package/pylada/process/tests/test_program.py:53: 64: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 64: 64: self = 64: 64: def poll(self): 64: """ Polls current job. 64: 64: :returns: True if external program is finished. 64: :raises Fail: If external program returns a non-zero exit code. 64: """ 64: from . import Fail 64: if super(ProgramProcess, self).poll(): 64: return True 64: # check if we have currently running process. 64: # if current process is finished running, closes stdout and stdout. 64: poll = self.process.poll() 64: if poll is None: 64: return False 64: # call callback. 64: logger.debug("program has onfinish %s", self.onfinish is not None) 64: if self.onfinish is not None: 64: try: 64: self.onfinish(process=self, error=(poll != 0)) 64: except Exception as e: 64: import sys 64: import traceback 64: exc_type, exc_value, exc_traceback = sys.exc_info() 64: tb = traceback.format_tb(exc_traceback) 64: self._cleanup() 64: raise Fail('Error on call to "onfinish"\n{0}: {1}\n{2}\n' 64: .format(type(e), e, '\n'.join(tb))) 64: # now check possible error. 64: if poll != 0 and self.onfail is not None: 64: try: 64: self.onfail(process=self, error=poll) 64: except Fail: 64: pass 64: else: 64: poll = 0 64: # else: poll = 0 64: if poll != 0: 64: self.nberrors += 1 64: if self.nberrors >= self.maxtrials: 64: self._cleanup() 64: > raise Fail(poll) 64: E pylada.process.Fail: 1 64: 64: ../../python_package/pylada/process/program.py:231: Fail 64: ----------------------------- Captured stdout call ----------------------------- 64: 05/11/2019 11:33:38 PM Program was not started 64: ----------------------------- Captured stderr call ----------------------------- 64: -------------------------------------------------------------------------- 64: There are not enough slots available in the system to satisfy the 4 64: slots that were requested by the application: 64: 64: $SRC_DIR/build/python_package/pylada/process/tests/pifunctional.py 64: 64: Either request fewer slots for your application, or make more slots 64: available for use. 64: 64: A "slot" is the Open MPI term for an allocatable unit where we can 64: launch a process. The number of slots available are defined by the 64: environment in which Open MPI processes are run: 64: 64: 1. Hostfile, via "slots=N" clauses (N defaults to number of 64: processor cores if not provided) 64: 2. The --host command line parameter, via a ":N" suffix on the 64: hostname (N defaults to 1 if not provided) 64: 3. Resource manager (e.g., SLURM, PBS/Torque, LSF, etc.) 64: 4. If none of a hostfile, the --host command line parameter, or an 64: RM is present, Open MPI defaults to the number of processor cores 64: 64: In all the above cases, if you want Open MPI to default to the number 64: of hardware threads instead of the number of processor cores, use the 64: --use-hwthread-cpus option. 64: 64: Alternatively, you can use the --oversubscribe option to ignore the 64: number of available slots when deciding the number of processes to 64: launch. 64: -------------------------------------------------------------------------- 64: ------------------------------ Captured log call ------------------------------- 64: program.py 347 CRITICAL Program was not started 64: _____________________________ test_full_execution ______________________________ 64: 64: executable = '$SRC_DIR/build/python_package/pylada/process/tests/pifunctional.py' 64: tmpdir = local('/tmp/pytest-of-travis/pytest-4/test_full_execution0') 64: comm = {'n': 4, 'placement': '', 'ppn': 4} 64: 64: @mpi4py_required 64: def test_full_execution(executable, tmpdir, comm): 64: from pylada.process.program import ProgramProcess 64: from pylada.process import Fail 64: stdout = str(tmpdir.join('stdout')) 64: program = ProgramProcess( 64: executable, 64: outdir=str(tmpdir), 64: stderr=str(tmpdir.join('OMG')), 64: cmdline=['--sleep', 0, '--order', 50], 64: stdout=stdout, 64: dompi=True) 64: program.start(comm) 64: > program.wait() 64: 64: ../../python_package/pylada/process/tests/test_program.py:138: 64: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 64: ../../python_package/pylada/process/program.py:353: in wait 64: self.poll() 64: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 64: 64: self = 64: 64: def poll(self): 64: """ Polls current job. 64: 64: :returns: True if external program is finished. 64: :raises Fail: If external program returns a non-zero exit code. 64: """ 64: from . import Fail 64: if super(ProgramProcess, self).poll(): 64: return True 64: # check if we have currently running process. 64: # if current process is finished running, closes stdout and stdout. 64: poll = self.process.poll() 64: if poll is None: 64: return False 64: # call callback. 64: logger.debug("program has onfinish %s", self.onfinish is not None) 64: if self.onfinish is not None: 64: try: 64: self.onfinish(process=self, error=(poll != 0)) 64: except Exception as e: 64: import sys 64: import traceback 64: exc_type, exc_value, exc_traceback = sys.exc_info() 64: tb = traceback.format_tb(exc_traceback) 64: self._cleanup() 64: raise Fail('Error on call to "onfinish"\n{0}: {1}\n{2}\n' 64: .format(type(e), e, '\n'.join(tb))) 64: # now check possible error. 64: if poll != 0 and self.onfail is not None: 64: try: 64: self.onfail(process=self, error=poll) 64: except Fail: 64: pass 64: else: 64: poll = 0 64: # else: poll = 0 64: if poll != 0: 64: self.nberrors += 1 64: if self.nberrors >= self.maxtrials: 64: self._cleanup() 64: > raise Fail(poll) 64: E pylada.process.Fail: 1 64: 64: ../../python_package/pylada/process/program.py:231: Fail 64: ====================== 2 failed, 2 passed in 0.46 seconds ====================== 64/82 Test #64: pylada.process.program ....................***Failed 1.14 sec test 65 Start 65: pylada.process.jobfolder 65: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/process/tests/test_jobfolder.py" 65: Test timeout computed to be: 10000000 65: ============================= test session starts ============================== 65: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 65: rootdir: $SRC_DIR 65: plugins: bdd-3.1.0 65: collected 17 items 65: 65: ../../python_package/pylada/process/tests/test_jobfolder.py ...FFFFFFFFF [ 70%] 65: FFFFF [100%] 65: 65: =================================== FAILURES =================================== 65: ______________________ test_completes[jobfolder_process] _______________________ 65: 65: program = 65: comm = {'n': 4, 'placement': '', 'ppn': 4} 65: tmpdir = local('/tmp/pytest-of-travis/pytest-5/test_completes_jobfolder_proce0') 65: root = 65: do_multiple_mpi_programs = True 65: 65: @mpi4py_required 65: def test_completes(program, comm, tmpdir, root, do_multiple_mpi_programs): 65: from numpy import all, arange, abs, array 65: from pylada.jobfolder.massextract import MassExtract 65: from pylada.jobfolder import save 65: 65: program.start(comm) 65: > program.wait() 65: 65: ../../python_package/pylada/process/tests/test_jobfolder.py:99: 65: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 65: ../../python_package/pylada/process/jobfolder.py:290: in wait 65: while self.poll() == False: 65: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 65: 65: self = 65: 65: def poll(self): 65: """ Polls current job. """ 65: from . import NotStarted 65: from . import Fail 65: 65: if self.nbjobsleft == 0 and super(JobFolderProcess, self).poll(): 65: return True 65: if not hasattr(self, '_comm'): 65: raise NotStarted("Process was never started.") 65: 65: # weed out successfull and failed jobs. 65: finished = [] 65: for i, (name, process) in enumerate(list(self.process)): 65: try: 65: if process.poll() == True: 65: self._finished.add(name) 65: finished.append(i) 65: except Exception as e: 65: self.errors[name] = e 65: finished.append(i) 65: for i in sorted(finished)[::-1]: 65: name, process = self.process.pop(i) 65: process._cleanup() 65: 65: # returns True if nothing left to do. 65: if len(self.process) == 0 and len(self._torun) == 0: 65: self._cleanup() 65: if len(self.errors) == 0: 65: return True 65: else: 65: > raise Fail(str(self.errors)) 65: E pylada.process.Fail: {'6': Fail(1,), '7': Fail(1,), '3': Fail(1,), '2': Fail(1,), '4': Fail(1,), '1': Fail(1,), '0': Fail(1,), '5': Fail(1,)} 65: 65: ../../python_package/pylada/process/jobfolder.py:166: Fail 65: _________________________ test_completes[pool_process] _________________________ 65: 65: program = 65: comm = {'n': 4, 'placement': '', 'ppn': 4} 65: tmpdir = local('/tmp/pytest-of-travis/pytest-5/test_completes_pool_process_0') 65: root = 65: do_multiple_mpi_programs = True 65: 65: @mpi4py_required 65: def test_completes(program, comm, tmpdir, root, do_multiple_mpi_programs): 65: from numpy import all, arange, abs, array 65: from pylada.jobfolder.massextract import MassExtract 65: from pylada.jobfolder import save 65: 65: program.start(comm) 65: > program.wait() 65: 65: ../../python_package/pylada/process/tests/test_jobfolder.py:99: 65: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 65: ../../python_package/pylada/process/jobfolder.py:290: in wait 65: while self.poll() == False: 65: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 65: 65: self = 65: 65: def poll(self): 65: """ Polls current job. """ 65: from . import NotStarted 65: from . import Fail 65: 65: if self.nbjobsleft == 0 and super(JobFolderProcess, self).poll(): 65: return True 65: if not hasattr(self, '_comm'): 65: raise NotStarted("Process was never started.") 65: 65: # weed out successfull and failed jobs. 65: finished = [] 65: for i, (name, process) in enumerate(list(self.process)): 65: try: 65: if process.poll() == True: 65: self._finished.add(name) 65: finished.append(i) 65: except Exception as e: 65: self.errors[name] = e 65: finished.append(i) 65: for i in sorted(finished)[::-1]: 65: name, process = self.process.pop(i) 65: process._cleanup() 65: 65: # returns True if nothing left to do. 65: if len(self.process) == 0 and len(self._torun) == 0: 65: self._cleanup() 65: if len(self.errors) == 0: 65: return True 65: else: 65: > raise Fail(str(self.errors)) 65: E pylada.process.Fail: {'4': Fail(1,), '6': Fail(1,), '3': Fail(1,), '2': Fail(1,), '7': Fail(1,), '1': Fail(1,)} 65: 65: ../../python_package/pylada/process/jobfolder.py:166: Fail 65: _______________________ test_restart[jobfolder_process] ________________________ 65: 65: program = 65: comm = {'n': 4, 'placement': '', 'ppn': 4}, do_multiple_mpi_programs = True 65: 65: @mpi4py_required 65: def test_restart(program, comm, do_multiple_mpi_programs): 65: program.start(comm) 65: > program.wait() 65: 65: ../../python_package/pylada/process/tests/test_jobfolder.py:124: 65: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 65: ../../python_package/pylada/process/jobfolder.py:290: in wait 65: while self.poll() == False: 65: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 65: 65: self = 65: 65: def poll(self): 65: """ Polls current job. """ 65: from . import NotStarted 65: from . import Fail 65: 65: if self.nbjobsleft == 0 and super(JobFolderProcess, self).poll(): 65: return True 65: if not hasattr(self, '_comm'): 65: raise NotStarted("Process was never started.") 65: 65: # weed out successfull and failed jobs. 65: finished = [] 65: for i, (name, process) in enumerate(list(self.process)): 65: try: 65: if process.poll() == True: 65: self._finished.add(name) 65: finished.append(i) 65: except Exception as e: 65: self.errors[name] = e 65: finished.append(i) 65: for i in sorted(finished)[::-1]: 65: name, process = self.process.pop(i) 65: process._cleanup() 65: 65: # returns True if nothing left to do. 65: if len(self.process) == 0 and len(self._torun) == 0: 65: self._cleanup() 65: if len(self.errors) == 0: 65: return True 65: else: 65: > raise Fail(str(self.errors)) 65: E pylada.process.Fail: {'6': Fail(1,), '7': Fail(1,), '3': Fail(1,), '2': Fail(1,), '4': Fail(1,), '1': Fail(1,), '0': Fail(1,), '5': Fail(1,)} 65: 65: ../../python_package/pylada/process/jobfolder.py:166: Fail 65: __________________________ test_restart[pool_process] __________________________ 65: 65: program = 65: comm = {'n': 4, 'placement': '', 'ppn': 4}, do_multiple_mpi_programs = True 65: 65: @mpi4py_required 65: def test_restart(program, comm, do_multiple_mpi_programs): 65: program.start(comm) 65: > program.wait() 65: 65: ../../python_package/pylada/process/tests/test_jobfolder.py:124: 65: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 65: ../../python_package/pylada/process/jobfolder.py:290: in wait 65: while self.poll() == False: 65: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 65: 65: self = 65: 65: def poll(self): 65: """ Polls current job. """ 65: from . import NotStarted 65: from . import Fail 65: 65: if self.nbjobsleft == 0 and super(JobFolderProcess, self).poll(): 65: return True 65: if not hasattr(self, '_comm'): 65: raise NotStarted("Process was never started.") 65: 65: # weed out successfull and failed jobs. 65: finished = [] 65: for i, (name, process) in enumerate(list(self.process)): 65: try: 65: if process.poll() == True: 65: self._finished.add(name) 65: finished.append(i) 65: except Exception as e: 65: self.errors[name] = e 65: finished.append(i) 65: for i in sorted(finished)[::-1]: 65: name, process = self.process.pop(i) 65: process._cleanup() 65: 65: # returns True if nothing left to do. 65: if len(self.process) == 0 and len(self._torun) == 0: 65: self._cleanup() 65: if len(self.errors) == 0: 65: return True 65: else: 65: > raise Fail(str(self.errors)) 65: E pylada.process.Fail: {'5': Fail(1,), '1': Fail(1,), '2': Fail(1,), '7': Fail(1,), '3': Fail(1,), '4': Fail(1,)} 65: 65: ../../python_package/pylada/process/jobfolder.py:166: Fail 65: _________________ test_failed_job_discovery[jobfolder_process] _________________ 65: 65: tmpdir = local('/tmp/pytest-of-travis/pytest-5/test_failed_job_discovery_jobf0') 65: comm = {'n': 4, 'placement': '', 'ppn': 4} 65: root = 65: executable = '$SRC_DIR/build/python_package/pylada/process/tests/pifunctional.py' 65: Process = 65: do_multiple_mpi_programs = True 65: 65: @mpi4py_required 65: @mark.parametrize('Process', [jobfolder_process, pool_process]) 65: def test_failed_job_discovery(tmpdir, comm, root, executable, Process, 65: do_multiple_mpi_programs): 65: """Tests JobFolderProcess. 65: 65: Includes failure modes. 65: """ 65: from pytest import raises 65: from pylada.process import Fail 65: from pylada.process.tests.functional import Functional 65: 65: with raises(Fail): 65: job = root / str(666) 65: job.functional = Functional(executable, [50], fail='end') 65: program = Process(tmpdir, root) 65: assert program.nbjobsleft > 0 65: program.start(comm) 65: program.wait() 65: assert program.nbjobsleft == 0 65: 65: > assert len(program.errors.keys()) == 1 65: E AssertionError: assert 9 == 1 65: E + where 9 = len(dict_keys(['6', '7', '3', '2', '666', '4', '1', '0', '5'])) 65: E + where dict_keys(['6', '7', '3', '2', '666', '4', '1', '0', '5']) = () 65: E + where = {'0': Fail(1,), '1': Fail(1,), '2': Fail(1,), '3': Fail(1,), ...}.keys 65: E + where {'0': Fail(1,), '1': Fail(1,), '2': Fail(1,), '3': Fail(1,), ...} = .errors 65: 65: ../../python_package/pylada/process/tests/test_jobfolder.py:153: AssertionError 65: ___________________ test_failed_job_discovery[pool_process] ____________________ 65: 65: tmpdir = local('/tmp/pytest-of-travis/pytest-5/test_failed_job_discovery_pool0') 65: comm = {'n': 4, 'placement': '', 'ppn': 4} 65: root = 65: executable = '$SRC_DIR/build/python_package/pylada/process/tests/pifunctional.py' 65: Process = 65: do_multiple_mpi_programs = True 65: 65: @mpi4py_required 65: @mark.parametrize('Process', [jobfolder_process, pool_process]) 65: def test_failed_job_discovery(tmpdir, comm, root, executable, Process, 65: do_multiple_mpi_programs): 65: """Tests JobFolderProcess. 65: 65: Includes failure modes. 65: """ 65: from pytest import raises 65: from pylada.process import Fail 65: from pylada.process.tests.functional import Functional 65: 65: with raises(Fail): 65: job = root / str(666) 65: job.functional = Functional(executable, [50], fail='end') 65: program = Process(tmpdir, root) 65: assert program.nbjobsleft > 0 65: program.start(comm) 65: program.wait() 65: assert program.nbjobsleft == 0 65: 65: > assert len(program.errors.keys()) == 1 65: E AssertionError: assert 6 == 1 65: E + where 6 = len(dict_keys(['666', '7', '6', '3', '0', '5'])) 65: E + where dict_keys(['666', '7', '6', '3', '0', '5']) = () 65: E + where = {'0': Fail(1,), '3': Fail(1,), '5': Fail(1,), '6': Fail(1,), ...}.keys 65: E + where {'0': Fail(1,), '3': Fail(1,), '5': Fail(1,), '6': Fail(1,), ...} = .errors 65: 65: ../../python_package/pylada/process/tests/test_jobfolder.py:153: AssertionError 65: __________________ test_restart_failed_job[jobfolder_process] __________________ 65: 65: tmpdir = local('/tmp/pytest-of-travis/pytest-5/test_restart_failed_job_jobfol0') 65: comm = {'n': 4, 'placement': '', 'ppn': 4} 65: root = 65: executable = '$SRC_DIR/build/python_package/pylada/process/tests/pifunctional.py' 65: Process = 65: do_multiple_mpi_programs = True 65: 65: @mpi4py_required 65: @mark.parametrize('Process', [jobfolder_process, pool_process]) 65: def test_restart_failed_job(tmpdir, comm, root, executable, Process, 65: do_multiple_mpi_programs): 65: from pytest import raises 65: from pylada.process import Fail 65: from pylada.process.tests.functional import Functional 65: 65: with raises(Fail): 65: job = root / str(666) 65: job.functional = Functional(executable, [50], fail='end') 65: program = Process(tmpdir, root) 65: program.start(comm) 65: program.wait() 65: 65: job.functional.order = [45] 65: job.functional.fail = None 65: program = Process(tmpdir, root) 65: assert program.nbjobsleft > 0 65: program.start(comm) 65: > program.wait() 65: 65: ../../python_package/pylada/process/tests/test_jobfolder.py:178: 65: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 65: ../../python_package/pylada/process/jobfolder.py:290: in wait 65: while self.poll() == False: 65: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 65: 65: self = 65: 65: def poll(self): 65: """ Polls current job. """ 65: from . import NotStarted 65: from . import Fail 65: 65: if self.nbjobsleft == 0 and super(JobFolderProcess, self).poll(): 65: return True 65: if not hasattr(self, '_comm'): 65: raise NotStarted("Process was never started.") 65: 65: # weed out successfull and failed jobs. 65: finished = [] 65: for i, (name, process) in enumerate(list(self.process)): 65: try: 65: if process.poll() == True: 65: self._finished.add(name) 65: finished.append(i) 65: except Exception as e: 65: self.errors[name] = e 65: finished.append(i) 65: for i in sorted(finished)[::-1]: 65: name, process = self.process.pop(i) 65: process._cleanup() 65: 65: # returns True if nothing left to do. 65: if len(self.process) == 0 and len(self._torun) == 0: 65: self._cleanup() 65: if len(self.errors) == 0: 65: return True 65: else: 65: > raise Fail(str(self.errors)) 65: E pylada.process.Fail: {'6': Fail(1,), '7': Fail(1,), '3': Fail(1,), '2': Fail(1,), '666': Fail(1,), '4': Fail(1,), '1': Fail(1,), '0': Fail(1,), '5': Fail(1,)} 65: 65: ../../python_package/pylada/process/jobfolder.py:166: Fail 65: ____________________ test_restart_failed_job[pool_process] _____________________ 65: 65: tmpdir = local('/tmp/pytest-of-travis/pytest-5/test_restart_failed_job_pool_p0') 65: comm = {'n': 4, 'placement': '', 'ppn': 4} 65: root = 65: executable = '$SRC_DIR/build/python_package/pylada/process/tests/pifunctional.py' 65: Process = 65: do_multiple_mpi_programs = True 65: 65: @mpi4py_required 65: @mark.parametrize('Process', [jobfolder_process, pool_process]) 65: def test_restart_failed_job(tmpdir, comm, root, executable, Process, 65: do_multiple_mpi_programs): 65: from pytest import raises 65: from pylada.process import Fail 65: from pylada.process.tests.functional import Functional 65: 65: with raises(Fail): 65: job = root / str(666) 65: job.functional = Functional(executable, [50], fail='end') 65: program = Process(tmpdir, root) 65: program.start(comm) 65: program.wait() 65: 65: job.functional.order = [45] 65: job.functional.fail = None 65: program = Process(tmpdir, root) 65: assert program.nbjobsleft > 0 65: program.start(comm) 65: > program.wait() 65: 65: ../../python_package/pylada/process/tests/test_jobfolder.py:178: 65: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 65: ../../python_package/pylada/process/jobfolder.py:290: in wait 65: while self.poll() == False: 65: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 65: 65: self = 65: 65: def poll(self): 65: """ Polls current job. """ 65: from . import NotStarted 65: from . import Fail 65: 65: if self.nbjobsleft == 0 and super(JobFolderProcess, self).poll(): 65: return True 65: if not hasattr(self, '_comm'): 65: raise NotStarted("Process was never started.") 65: 65: # weed out successfull and failed jobs. 65: finished = [] 65: for i, (name, process) in enumerate(list(self.process)): 65: try: 65: if process.poll() == True: 65: self._finished.add(name) 65: finished.append(i) 65: except Exception as e: 65: self.errors[name] = e 65: finished.append(i) 65: for i in sorted(finished)[::-1]: 65: name, process = self.process.pop(i) 65: process._cleanup() 65: 65: # returns True if nothing left to do. 65: if len(self.process) == 0 and len(self._torun) == 0: 65: self._cleanup() 65: if len(self.errors) == 0: 65: return True 65: else: 65: > raise Fail(str(self.errors)) 65: E pylada.process.Fail: {'4': Fail(1,), '7': Fail(1,), '2': Fail(1,), '666': Fail(1,), '6': Fail(1,), '3': Fail(1,), '1': Fail(1,), '5': Fail(1,)} 65: 65: ../../python_package/pylada/process/jobfolder.py:166: Fail 65: ________________________ test_update[jobfolder_process] ________________________ 65: 65: tmpdir = local('/tmp/pytest-of-travis/pytest-5/test_update_jobfolder_process_0') 65: executable = '$SRC_DIR/build/python_package/pylada/process/tests/pifunctional.py' 65: comm = {'n': 4, 'placement': '', 'ppn': 4} 65: Process = 65: do_multiple_mpi_programs = True 65: 65: @mpi4py_required 65: @mark.parametrize('Process', [jobfolder_process, pool_process]) 65: def test_update(tmpdir, executable, comm, Process, do_multiple_mpi_programs): 65: from copy import deepcopy 65: from pylada.jobfolder.massextract import MassExtract 65: from pylada.jobfolder import save 65: 65: # creates and start computing first set of jobs 65: root = jobfolders(executable, 0, 3) 65: program = Process(tmpdir, deepcopy(root), keepalive=True) 65: assert program.keepalive 65: program.start(comm) 65: assert hasattr(program, '_comm') 65: 65: # update jobfolder and start computing second set of jobs 65: supp = jobfolders(executable, 3, 6) 65: program.update(supp) 65: for key in supp.keys(): 65: assert key in program.jobfolder 65: for key in root.keys(): 65: assert key in program.jobfolder 65: assert len(program.jobfolder) == len(root) + len(supp) 65: 65: # create mass extraction object and check succcess 65: save(program.jobfolder, str(tmpdir.join('dict.dict')), overwrite=True) 65: extract = MassExtract(str(tmpdir.join('dict.dict'))) 65: 65: # wait for job completion and check for success 65: > program.wait() 65: 65: ../../python_package/pylada/process/tests/test_jobfolder.py:210: 65: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 65: ../../python_package/pylada/process/jobfolder.py:290: in wait 65: while self.poll() == False: 65: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 65: 65: self = 65: 65: def poll(self): 65: """ Polls current job. """ 65: from . import NotStarted 65: from . import Fail 65: 65: if self.nbjobsleft == 0 and super(JobFolderProcess, self).poll(): 65: return True 65: if not hasattr(self, '_comm'): 65: raise NotStarted("Process was never started.") 65: 65: # weed out successfull and failed jobs. 65: finished = [] 65: for i, (name, process) in enumerate(list(self.process)): 65: try: 65: if process.poll() == True: 65: self._finished.add(name) 65: finished.append(i) 65: except Exception as e: 65: self.errors[name] = e 65: finished.append(i) 65: for i in sorted(finished)[::-1]: 65: name, process = self.process.pop(i) 65: process._cleanup() 65: 65: # returns True if nothing left to do. 65: if len(self.process) == 0 and len(self._torun) == 0: 65: self._cleanup() 65: if len(self.errors) == 0: 65: return True 65: else: 65: > raise Fail(str(self.errors)) 65: E pylada.process.Fail: {'0': Fail(1,), '2': Fail(1,), '1': Fail(1,), '3': Fail(1,), '5': Fail(1,), '4': Fail(1,)} 65: 65: ../../python_package/pylada/process/jobfolder.py:166: Fail 65: __________________________ test_update[pool_process] ___________________________ 65: 65: tmpdir = local('/tmp/pytest-of-travis/pytest-5/test_update_pool_process_0') 65: executable = '$SRC_DIR/build/python_package/pylada/process/tests/pifunctional.py' 65: comm = {'n': 4, 'placement': '', 'ppn': 4} 65: Process = 65: do_multiple_mpi_programs = True 65: 65: @mpi4py_required 65: @mark.parametrize('Process', [jobfolder_process, pool_process]) 65: def test_update(tmpdir, executable, comm, Process, do_multiple_mpi_programs): 65: from copy import deepcopy 65: from pylada.jobfolder.massextract import MassExtract 65: from pylada.jobfolder import save 65: 65: # creates and start computing first set of jobs 65: root = jobfolders(executable, 0, 3) 65: program = Process(tmpdir, deepcopy(root), keepalive=True) 65: assert program.keepalive 65: program.start(comm) 65: assert hasattr(program, '_comm') 65: 65: # update jobfolder and start computing second set of jobs 65: supp = jobfolders(executable, 3, 6) 65: program.update(supp) 65: for key in supp.keys(): 65: assert key in program.jobfolder 65: for key in root.keys(): 65: assert key in program.jobfolder 65: assert len(program.jobfolder) == len(root) + len(supp) 65: 65: # create mass extraction object and check succcess 65: save(program.jobfolder, str(tmpdir.join('dict.dict')), overwrite=True) 65: extract = MassExtract(str(tmpdir.join('dict.dict'))) 65: 65: # wait for job completion and check for success 65: > program.wait() 65: 65: ../../python_package/pylada/process/tests/test_jobfolder.py:210: 65: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 65: ../../python_package/pylada/process/jobfolder.py:290: in wait 65: while self.poll() == False: 65: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 65: 65: self = 65: 65: def poll(self): 65: """ Polls current job. """ 65: from . import NotStarted 65: from . import Fail 65: 65: if self.nbjobsleft == 0 and super(JobFolderProcess, self).poll(): 65: return True 65: if not hasattr(self, '_comm'): 65: raise NotStarted("Process was never started.") 65: 65: # weed out successfull and failed jobs. 65: finished = [] 65: for i, (name, process) in enumerate(list(self.process)): 65: try: 65: if process.poll() == True: 65: self._finished.add(name) 65: finished.append(i) 65: except Exception as e: 65: self.errors[name] = e 65: finished.append(i) 65: for i in sorted(finished)[::-1]: 65: name, process = self.process.pop(i) 65: process._cleanup() 65: 65: # returns True if nothing left to do. 65: if len(self.process) == 0 and len(self._torun) == 0: 65: self._cleanup() 65: if len(self.errors) == 0: 65: return True 65: else: 65: > raise Fail(str(self.errors)) 65: E pylada.process.Fail: {'1': Fail(1,), '3': Fail(1,), '5': Fail(1,), '0': Fail(1,), '2': Fail(1,), '4': Fail(1,)} 65: 65: ../../python_package/pylada/process/jobfolder.py:166: Fail 65: ________________ test_update_with_deleteold[jobfolder_process] _________________ 65: 65: tmpdir = local('/tmp/pytest-of-travis/pytest-5/test_update_with_deleteold_job0') 65: executable = '$SRC_DIR/build/python_package/pylada/process/tests/pifunctional.py' 65: comm = {'n': 4, 'placement': '', 'ppn': 4} 65: Process = 65: do_multiple_mpi_programs = True 65: 65: @mpi4py_required 65: @mark.parametrize('Process', [jobfolder_process, pool_process]) 65: def test_update_with_deleteold(tmpdir, executable, comm, Process, 65: do_multiple_mpi_programs): 65: # creates and start computing first set of jobs 65: root = jobfolders(executable, 0, 3) 65: program = Process(tmpdir, root, keepalive=True) 65: program.start(comm) 65: 65: supp = jobfolders(executable, 3, 6) 65: # wait for completion of current jobs, check that update with delete jobs results in only 65: # uncompleted jobs 65: > program.wait() 65: 65: ../../python_package/pylada/process/tests/test_jobfolder.py:227: 65: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 65: ../../python_package/pylada/process/jobfolder.py:290: in wait 65: while self.poll() == False: 65: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 65: 65: self = 65: 65: def poll(self): 65: """ Polls current job. """ 65: from . import NotStarted 65: from . import Fail 65: 65: if self.nbjobsleft == 0 and super(JobFolderProcess, self).poll(): 65: return True 65: if not hasattr(self, '_comm'): 65: raise NotStarted("Process was never started.") 65: 65: # weed out successfull and failed jobs. 65: finished = [] 65: for i, (name, process) in enumerate(list(self.process)): 65: try: 65: if process.poll() == True: 65: self._finished.add(name) 65: finished.append(i) 65: except Exception as e: 65: self.errors[name] = e 65: finished.append(i) 65: for i in sorted(finished)[::-1]: 65: name, process = self.process.pop(i) 65: process._cleanup() 65: 65: # returns True if nothing left to do. 65: if len(self.process) == 0 and len(self._torun) == 0: 65: self._cleanup() 65: if len(self.errors) == 0: 65: return True 65: else: 65: > raise Fail(str(self.errors)) 65: E pylada.process.Fail: {'0': Fail(1,), '2': Fail(1,), '1': Fail(1,)} 65: 65: ../../python_package/pylada/process/jobfolder.py:166: Fail 65: ___________________ test_update_with_deleteold[pool_process] ___________________ 65: 65: tmpdir = local('/tmp/pytest-of-travis/pytest-5/test_update_with_deleteold_poo0') 65: executable = '$SRC_DIR/build/python_package/pylada/process/tests/pifunctional.py' 65: comm = {'n': 4, 'placement': '', 'ppn': 4} 65: Process = 65: do_multiple_mpi_programs = True 65: 65: @mpi4py_required 65: @mark.parametrize('Process', [jobfolder_process, pool_process]) 65: def test_update_with_deleteold(tmpdir, executable, comm, Process, 65: do_multiple_mpi_programs): 65: # creates and start computing first set of jobs 65: root = jobfolders(executable, 0, 3) 65: program = Process(tmpdir, root, keepalive=True) 65: program.start(comm) 65: 65: supp = jobfolders(executable, 3, 6) 65: # wait for completion of current jobs, check that update with delete jobs results in only 65: # uncompleted jobs 65: > program.wait() 65: 65: ../../python_package/pylada/process/tests/test_jobfolder.py:227: 65: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 65: ../../python_package/pylada/process/jobfolder.py:290: in wait 65: while self.poll() == False: 65: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 65: 65: self = 65: 65: def poll(self): 65: """ Polls current job. """ 65: from . import NotStarted 65: from . import Fail 65: 65: if self.nbjobsleft == 0 and super(JobFolderProcess, self).poll(): 65: return True 65: if not hasattr(self, '_comm'): 65: raise NotStarted("Process was never started.") 65: 65: # weed out successfull and failed jobs. 65: finished = [] 65: for i, (name, process) in enumerate(list(self.process)): 65: try: 65: if process.poll() == True: 65: self._finished.add(name) 65: finished.append(i) 65: except Exception as e: 65: self.errors[name] = e 65: finished.append(i) 65: for i in sorted(finished)[::-1]: 65: name, process = self.process.pop(i) 65: process._cleanup() 65: 65: # returns True if nothing left to do. 65: if len(self.process) == 0 and len(self._torun) == 0: 65: self._cleanup() 65: if len(self.errors) == 0: 65: return True 65: else: 65: > raise Fail(str(self.errors)) 65: E pylada.process.Fail: {'0': Fail(1,), '2': Fail(1,)} 65: 65: ../../python_package/pylada/process/jobfolder.py:166: Fail 65: ___________________ test_update_with_fail[jobfolder_process] ___________________ 65: 65: tmpdir = local('/tmp/pytest-of-travis/pytest-5/test_update_with_fail_jobfolde0') 65: executable = '$SRC_DIR/build/python_package/pylada/process/tests/pifunctional.py' 65: comm = {'n': 4, 'placement': '', 'ppn': 4} 65: Process = 65: do_multiple_mpi_programs = True 65: 65: @mpi4py_required 65: @mark.parametrize('Process', [jobfolder_process, pool_process]) 65: def test_update_with_fail(tmpdir, executable, comm, Process, 65: do_multiple_mpi_programs): 65: """Tests JobFolderProcess with update and failure.""" 65: from pytest import raises 65: from pylada.process import Fail 65: from pylada.jobfolder.massextract import MassExtract 65: from pylada.jobfolder import save 65: 65: root = jobfolders(executable, 0, 3) 65: root['1'].functional.order = 68 65: root['1'].functional.fail = 'end' 65: root['1'].sleep = None 65: 65: supp = jobfolders(executable, 3, 6) 65: supp['5'].sleep = 0 65: supp['5'].functional.order = 78 65: supp['5'].functional.fail = 'midway' 65: 65: program = Process(tmpdir, root, keepalive=True) 65: 65: # compute current jobs. 65: program.start(comm) 65: with raises(Fail): 65: program.wait() 65: > assert len(program.errors) == 1 65: E AssertionError: assert 3 == 1 65: E + where 3 = len({'0': Fail(1,), '1': Fail(1,), '2': Fail(1,)}) 65: E + where {'0': Fail(1,), '1': Fail(1,), '2': Fail(1,)} = .errors 65: 65: ../../python_package/pylada/process/tests/test_jobfolder.py:260: AssertionError 65: _____________________ test_update_with_fail[pool_process] ______________________ 65: 65: tmpdir = local('/tmp/pytest-of-travis/pytest-5/test_update_with_fail_pool_pro0') 65: executable = '$SRC_DIR/build/python_package/pylada/process/tests/pifunctional.py' 65: comm = {'n': 4, 'placement': '', 'ppn': 4} 65: Process = 65: do_multiple_mpi_programs = True 65: 65: @mpi4py_required 65: @mark.parametrize('Process', [jobfolder_process, pool_process]) 65: def test_update_with_fail(tmpdir, executable, comm, Process, 65: do_multiple_mpi_programs): 65: """Tests JobFolderProcess with update and failure.""" 65: from pytest import raises 65: from pylada.process import Fail 65: from pylada.jobfolder.massextract import MassExtract 65: from pylada.jobfolder import save 65: 65: root = jobfolders(executable, 0, 3) 65: root['1'].functional.order = 68 65: root['1'].functional.fail = 'end' 65: root['1'].sleep = None 65: 65: supp = jobfolders(executable, 3, 6) 65: supp['5'].sleep = 0 65: supp['5'].functional.order = 78 65: supp['5'].functional.fail = 'midway' 65: 65: program = Process(tmpdir, root, keepalive=True) 65: 65: # compute current jobs. 65: program.start(comm) 65: with raises(Fail): 65: program.wait() 65: > assert len(program.errors) == 1 65: E AssertionError: assert 3 == 1 65: E + where 3 = len({'0': Fail(1,), '1': Fail(1,), '2': Fail(1,)}) 65: E + where {'0': Fail(1,), '1': Fail(1,), '2': Fail(1,)} = .errors 65: 65: ../../python_package/pylada/process/tests/test_jobfolder.py:260: AssertionError 65: =============================== warnings summary =============================== 65: build/python_package/pylada/process/tests/test_jobfolder.py::test_update[jobfolder_process] 65: build/python_package/pylada/process/tests/test_jobfolder.py::test_update[pool_process] 65: $SRC_DIR/build/python_package/pylada/misc/relativepath.py:213: DeprecationWarning: inspect.getargspec() is deprecated, use inspect.signature() or inspect.getfullargspec() 65: N = len(getargspec(value)[0]) 65: 65: -- Docs: https://docs.pytest.org/en/latest/warnings.html 65: =============== 14 failed, 3 passed, 2 warnings in 62.61 seconds =============== 65/82 Test #65: pylada.process.jobfolder ..................***Failed 63.29 sec test 66 Start 66: pylada.process.pool 66: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/process/tests/test_pool.py" 66: Test timeout computed to be: 10000000 66: ============================= test session starts ============================== 66: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 66: rootdir: $SRC_DIR 66: plugins: bdd-3.1.0 66: collected 3 items 66: 66: ../../python_package/pylada/process/tests/test_pool.py ... [100%] 66: 66: =========================== 3 passed in 1.84 seconds =========================== 66/82 Test #66: pylada.process.pool ....................... Passed 2.90 sec test 67 Start 67: pylada.jobfolder.collect 67: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/jobfolder/tests/test_collect.py" 67: Test timeout computed to be: 10000000 67: ============================= test session starts ============================== 67: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 67: rootdir: $SRC_DIR 67: plugins: bdd-3.1.0 67: collected 19 items 67: 67: ../../python_package/pylada/jobfolder/tests/test_collect.py ............ [ 63%] 67: ....... [100%] 67: 67: =============================== warnings summary =============================== 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_functional_is_collected 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_indiv_is_collected 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_fail_on_unknown_attribute 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_wildcard_indexing[*/1-keys0] 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_wildcard_indexing[*/1-keys0] 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_wildcard_indexing[this-keys1] 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_wildcard_indexing[this-keys1] 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_wildcard_indexing[that/2/-keys2] 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_wildcard_indexing[that/2/-keys2] 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_more_complex_wildcard_indexing[*/*/another-keys0-/] 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_more_complex_wildcard_indexing[*/*/another-keys0-/] 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_more_complex_wildcard_indexing[*/*/another-keys0-/] 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_more_complex_wildcard_indexing[*/*/another/-keys1-/] 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_more_complex_wildcard_indexing[*/*/another/-keys1-/] 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_more_complex_wildcard_indexing[*/*/another/-keys1-/] 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_more_complex_wildcard_indexing[*/another-keys2-/] 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_more_complex_wildcard_indexing[*/another-keys2-/] 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_more_complex_wildcard_indexing[*/another-keys2-/] 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_more_complex_wildcard_indexing[../that-keys3-this] 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_more_complex_wildcard_indexing[../that-keys3-this] 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_more_complex_wildcard_indexing[../that-keys3-this] 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_more_complex_wildcard_indexing[../that-keys4-this/0] 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_more_complex_wildcard_indexing[../that-keys4-this/0] 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_more_complex_wildcard_indexing[../that-keys4-this/0] 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_more_complex_wildcard_indexing[../*-keys5-this/0] 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_more_complex_wildcard_indexing[../*-keys5-this/0] 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_more_complex_wildcard_indexing[../*-keys5-this/0] 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_more_complex_wildcard_indexing[../*-keys6-this/*] 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_more_complex_wildcard_indexing[../*-keys6-this/*] 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_more_complex_wildcard_indexing[../*-keys6-this/*] 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_regex_indexing[.*/1-keys0] 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_regex_indexing[.*/1-keys0] 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_regex_indexing[this-keys1] 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_regex_indexing[this-keys1] 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_regex_indexing[that/2/-keys2] 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_regex_indexing[that/2/-keys2] 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_regex_indexing[.*/.*/another-keys3] 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_regex_indexing[.*/.*/another-keys3] 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_regex_indexing[.*/another-keys4] 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_regex_indexing[.*/another-keys4] 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_naked_end 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_naked_end 67: $SRC_DIR/build/python_package/pylada/misc/relativepath.py:213: DeprecationWarning: inspect.getargspec() is deprecated, use inspect.signature() or inspect.getfullargspec() 67: N = len(getargspec(value)[0]) 67: 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_wildcard_indexing[*/1-keys0] 67: $SRC_DIR/build/python_package/pylada/jobfolder/extract.py:205: DeprecationWarning: Flags not at the start of the expression '\\/[^/]*\\/1(?=/|\\Z)(?' (truncated) 67: return compile(pattern + r"(?=/|\Z)(?ms)", flags) 67: 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_wildcard_indexing[this-keys1] 67: $SRC_DIR/build/python_package/pylada/jobfolder/extract.py:205: DeprecationWarning: Flags not at the start of the expression '\\/this(?=/|\\Z)(?ms)' 67: return compile(pattern + r"(?=/|\Z)(?ms)", flags) 67: 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_wildcard_indexing[that/2/-keys2] 67: $SRC_DIR/build/python_package/pylada/jobfolder/extract.py:205: DeprecationWarning: Flags not at the start of the expression '\\/that\\/2(?=/|\\Z)(?m' (truncated) 67: return compile(pattern + r"(?=/|\Z)(?ms)", flags) 67: 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_more_complex_wildcard_indexing[*/*/another-keys0-/] 67: $SRC_DIR/build/python_package/pylada/jobfolder/extract.py:205: DeprecationWarning: Flags not at the start of the expression '\\/[^/]*\\/[^/]*\\/anot' (truncated) 67: return compile(pattern + r"(?=/|\Z)(?ms)", flags) 67: 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_more_complex_wildcard_indexing[*/another-keys2-/] 67: $SRC_DIR/build/python_package/pylada/jobfolder/extract.py:205: DeprecationWarning: Flags not at the start of the expression '\\/[^/]*\\/another(?=/' (truncated) 67: return compile(pattern + r"(?=/|\Z)(?ms)", flags) 67: 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_more_complex_wildcard_indexing[../that-keys3-this] 67: $SRC_DIR/build/python_package/pylada/jobfolder/extract.py:205: DeprecationWarning: Flags not at the start of the expression '\\/that(?=/|\\Z)(?ms)' 67: return compile(pattern + r"(?=/|\Z)(?ms)", flags) 67: 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_more_complex_wildcard_indexing[../that-keys4-this/0] 67: $SRC_DIR/build/python_package/pylada/jobfolder/extract.py:205: DeprecationWarning: Flags not at the start of the expression '\\/this\\/that(?=/|\\Z)' (truncated) 67: return compile(pattern + r"(?=/|\Z)(?ms)", flags) 67: 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_more_complex_wildcard_indexing[../*-keys5-this/0] 67: $SRC_DIR/build/python_package/pylada/jobfolder/extract.py:205: DeprecationWarning: Flags not at the start of the expression '\\/this\\/[^/]*(?=/|\\Z' (truncated) 67: return compile(pattern + r"(?=/|\Z)(?ms)", flags) 67: 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_regex_indexing[.*/1-keys0] 67: $SRC_DIR/build/python_package/pylada/jobfolder/extract.py:205: DeprecationWarning: Flags not at the start of the expression '/.*/1(?=/|\\Z)(?ms)' 67: return compile(pattern + r"(?=/|\Z)(?ms)", flags) 67: 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_regex_indexing[this-keys1] 67: $SRC_DIR/build/python_package/pylada/jobfolder/extract.py:205: DeprecationWarning: Flags not at the start of the expression '/this(?=/|\\Z)(?ms)' 67: return compile(pattern + r"(?=/|\Z)(?ms)", flags) 67: 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_regex_indexing[.*/.*/another-keys3] 67: $SRC_DIR/build/python_package/pylada/jobfolder/extract.py:205: DeprecationWarning: Flags not at the start of the expression '/.*/.*/another(?=/|\\' (truncated) 67: return compile(pattern + r"(?=/|\Z)(?ms)", flags) 67: 67: build/python_package/pylada/jobfolder/tests/test_collect.py::test_regex_indexing[.*/another-keys4] 67: $SRC_DIR/build/python_package/pylada/jobfolder/extract.py:205: DeprecationWarning: Flags not at the start of the expression '/.*/another(?=/|\\Z)(' (truncated) 67: return compile(pattern + r"(?=/|\Z)(?ms)", flags) 67: 67: -- Docs: https://docs.pytest.org/en/latest/warnings.html 67: ==================== 19 passed, 54 warnings in 0.52 seconds ==================== 67/82 Test #67: pylada.jobfolder.collect .................. Passed 1.08 sec test 68 Start 68: pylada.jobfolder.forwardingdict 68: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/jobfolder/tests/test_forwardingdict.py" 68: Test timeout computed to be: 10000000 68: ============================= test session starts ============================== 68: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 68: rootdir: $SRC_DIR 68: plugins: bdd-3.1.0 68: collected 16 items 68: 68: ../../python_package/pylada/jobfolder/tests/test_forwardingdict.py ..... [ 31%] 68: ........... [100%] 68: 68: ========================== 16 passed in 0.34 seconds =========================== 68/82 Test #68: pylada.jobfolder.forwardingdict ........... Passed 0.94 sec test 69 Start 69: pylada.jobfolder.jobfolder 69: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/jobfolder/tests/test_jobfolder.py" 69: Test timeout computed to be: 10000000 69: ============================= test session starts ============================== 69: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 69: rootdir: $SRC_DIR 69: plugins: bdd-3.1.0 69: collected 12 items 69: 69: ../../python_package/pylada/jobfolder/tests/test_jobfolder.py .......... [ 83%] 69: .. [100%] 69: 69: ========================== 12 passed in 0.34 seconds =========================== 69/82 Test #69: pylada.jobfolder.jobfolder ................ Passed 0.84 sec test 70 Start 70: pylada.jobfolder.jobparams 70: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/jobfolder/tests/test_jobparams.py" 70: Test timeout computed to be: 10000000 70: ============================= test session starts ============================== 70: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 70: rootdir: $SRC_DIR 70: plugins: bdd-3.1.0 70: collected 28 items 70: 70: ../../python_package/pylada/jobfolder/tests/test_jobparams.py .......... [ 35%] 70: .................. [100%] 70: 70: =============================== warnings summary =============================== 70: build/python_package/pylada/jobfolder/tests/test_jobparams.py::test_wildcard_indexing[*/1-keys0] 70: $SRC_DIR/build/python_package/pylada/jobfolder/extract.py:205: DeprecationWarning: Flags not at the start of the expression '\\/[^/]*\\/1(?=/|\\Z)(?' (truncated) 70: return compile(pattern + r"(?=/|\Z)(?ms)", flags) 70: 70: build/python_package/pylada/jobfolder/tests/test_jobparams.py::test_wildcard_indexing[this-keys1] 70: $SRC_DIR/build/python_package/pylada/jobfolder/extract.py:205: DeprecationWarning: Flags not at the start of the expression '\\/this(?=/|\\Z)(?ms)' 70: return compile(pattern + r"(?=/|\Z)(?ms)", flags) 70: 70: build/python_package/pylada/jobfolder/tests/test_jobparams.py::test_wildcard_indexing[that/2/-keys2] 70: $SRC_DIR/build/python_package/pylada/jobfolder/extract.py:205: DeprecationWarning: Flags not at the start of the expression '\\/that\\/2(?=/|\\Z)(?m' (truncated) 70: return compile(pattern + r"(?=/|\Z)(?ms)", flags) 70: 70: build/python_package/pylada/jobfolder/tests/test_jobparams.py::test_add_item 70: $SRC_DIR/build/python_package/pylada/jobfolder/extract.py:205: DeprecationWarning: Flags not at the start of the expression '\\/this\\/0\\/another(?' (truncated) 70: return compile(pattern + r"(?=/|\Z)(?ms)", flags) 70: 70: build/python_package/pylada/jobfolder/tests/test_jobparams.py::test_more_complex_wildcard_indexing[*/*/another-keys0-/] 70: $SRC_DIR/build/python_package/pylada/jobfolder/extract.py:205: DeprecationWarning: Flags not at the start of the expression '\\/[^/]*\\/[^/]*\\/anot' (truncated) 70: return compile(pattern + r"(?=/|\Z)(?ms)", flags) 70: 70: build/python_package/pylada/jobfolder/tests/test_jobparams.py::test_more_complex_wildcard_indexing[*/another-keys2-/] 70: $SRC_DIR/build/python_package/pylada/jobfolder/extract.py:205: DeprecationWarning: Flags not at the start of the expression '\\/[^/]*\\/another(?=/' (truncated) 70: return compile(pattern + r"(?=/|\Z)(?ms)", flags) 70: 70: build/python_package/pylada/jobfolder/tests/test_jobparams.py::test_more_complex_wildcard_indexing[../that-keys3-this] 70: $SRC_DIR/build/python_package/pylada/jobfolder/extract.py:205: DeprecationWarning: Flags not at the start of the expression '\\/that(?=/|\\Z)(?ms)' 70: return compile(pattern + r"(?=/|\Z)(?ms)", flags) 70: 70: build/python_package/pylada/jobfolder/tests/test_jobparams.py::test_more_complex_wildcard_indexing[../that-keys4-this/0] 70: $SRC_DIR/build/python_package/pylada/jobfolder/extract.py:205: DeprecationWarning: Flags not at the start of the expression '\\/this\\/that(?=/|\\Z)' (truncated) 70: return compile(pattern + r"(?=/|\Z)(?ms)", flags) 70: 70: build/python_package/pylada/jobfolder/tests/test_jobparams.py::test_more_complex_wildcard_indexing[../*-keys5-this/0] 70: $SRC_DIR/build/python_package/pylada/jobfolder/extract.py:205: DeprecationWarning: Flags not at the start of the expression '\\/this\\/[^/]*(?=/|\\Z' (truncated) 70: return compile(pattern + r"(?=/|\Z)(?ms)", flags) 70: 70: build/python_package/pylada/jobfolder/tests/test_jobparams.py::test_regex_indexing[.*/1-keys0] 70: $SRC_DIR/build/python_package/pylada/jobfolder/extract.py:205: DeprecationWarning: Flags not at the start of the expression '/.*/1(?=/|\\Z)(?ms)' 70: return compile(pattern + r"(?=/|\Z)(?ms)", flags) 70: 70: build/python_package/pylada/jobfolder/tests/test_jobparams.py::test_regex_indexing[this-keys1] 70: $SRC_DIR/build/python_package/pylada/jobfolder/extract.py:205: DeprecationWarning: Flags not at the start of the expression '/this(?=/|\\Z)(?ms)' 70: return compile(pattern + r"(?=/|\Z)(?ms)", flags) 70: 70: build/python_package/pylada/jobfolder/tests/test_jobparams.py::test_regex_indexing[.*/.*/another-keys3] 70: $SRC_DIR/build/python_package/pylada/jobfolder/extract.py:205: DeprecationWarning: Flags not at the start of the expression '/.*/.*/another(?=/|\\' (truncated) 70: return compile(pattern + r"(?=/|\Z)(?ms)", flags) 70: 70: build/python_package/pylada/jobfolder/tests/test_jobparams.py::test_regex_indexing[.*/another-keys4] 70: $SRC_DIR/build/python_package/pylada/jobfolder/extract.py:205: DeprecationWarning: Flags not at the start of the expression '/.*/another(?=/|\\Z)(' (truncated) 70: return compile(pattern + r"(?=/|\Z)(?ms)", flags) 70: 70: build/python_package/pylada/jobfolder/tests/test_jobparams.py::test_setting_attribute_for_some_jobs 70: $SRC_DIR/build/python_package/pylada/jobfolder/extract.py:205: DeprecationWarning: Flags not at the start of the expression '\\/[^/]*\\/0(?=/|\\Z)(?' (truncated) 70: return compile(pattern + r"(?=/|\Z)(?ms)", flags) 70: 70: -- Docs: https://docs.pytest.org/en/latest/warnings.html 70: ==================== 28 passed, 14 warnings in 0.39 seconds ==================== 70/82 Test #70: pylada.jobfolder.jobparams ................ Passed 0.95 sec test 71 Start 71: explore 71: Test command: $SRC_DIR/build/localpython.sh "-m" "IPython" "$SRC_DIR/build/python_package/ipython/tests/explore.py" 71: Test timeout computed to be: 10000000 71: [TerminalIPythonApp] WARNING | File not found: '$SRC_DIR/build/python_package/ipython/tests/explore.py' 71/82 Test #71: explore ................................... Passed 1.32 sec test 72 Start 72: goto 72: Test command: $SRC_DIR/build/localpython.sh "-m" "IPython" "$SRC_DIR/build/python_package/ipython/tests/goto.py" 72: Test timeout computed to be: 10000000 72: [TerminalIPythonApp] WARNING | File not found: '$SRC_DIR/build/python_package/ipython/tests/goto.py' 72/82 Test #72: goto ...................................... Passed 1.27 sec test 73 Start 73: pylada.espresso.card 73: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/espresso/tests/test_card.py" 73: Test timeout computed to be: 10000000 73: ============================= test session starts ============================== 73: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 73: rootdir: $SRC_DIR 73: plugins: bdd-3.1.0 73: collected 12 items 73: 73: ../../python_package/pylada/espresso/tests/test_card.py ............ [100%] 73: 73: =============================== warnings summary =============================== 73: build/python_package/pylada/espresso/tests/test_card.py::test_read_card 73: build/python_package/pylada/espresso/tests/test_card.py::test_read_subtitled_card 73: build/python_package/pylada/espresso/tests/test_card.py::test_goaround 73: build/python_package/pylada/espresso/tests/test_card.py::test_goaround 73: build/python_package/pylada/espresso/tests/test_card.py::test_goaround_subtitled 73: build/python_package/pylada/espresso/tests/test_card.py::test_goaround_subtitled 73: build/python_package/pylada/espresso/tests/test_card.py::test_read_but_not_find 73: build/python_package/pylada/espresso/tests/test_card.py::test_read_but_not_find 73: build/python_package/pylada/espresso/tests/test_card.py::test_read_but_not_find 73: $SRC_DIR/build/python_package/pylada/espresso/card.py:73: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead 73: logger.warn("Card %s could not find itself when reading input" % self.name) 73: 73: -- Docs: https://docs.pytest.org/en/latest/warnings.html 73: ==================== 12 passed, 9 warnings in 0.32 seconds ===================== 73/82 Test #73: pylada.espresso.card ...................... Passed 0.83 sec test 74 Start 74: pylada.espresso.extract 74: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/espresso/tests/test_extract.py" 74: Test timeout computed to be: 10000000 74: ============================= test session starts ============================== 74: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 74: rootdir: $SRC_DIR 74: plugins: bdd-3.1.0 74: collected 12 items 74: 74: ../../python_package/pylada/espresso/tests/test_extract.py ............ [100%] 74: 74: =============================== warnings summary =============================== 74: $SRC_DIR/build/python_package/pylada/espresso/extract.py:182 74: $SRC_DIR/build/python_package/pylada/espresso/extract.py:182: DeprecationWarning: invalid escape sequence \s 74: @grepper("Forces acting on atoms.*\n\n((?:\s*atom .* force = .*\n)*)") 74: 74: $SRC_DIR/build/python_package/pylada/espresso/extract.py:195 74: $SRC_DIR/build/python_package/pylada/espresso/extract.py:195: DeprecationWarning: invalid escape sequence \! 74: @grepper("\!\s*total energy\s*=\s*(\S*) Ry", fail=True) 74: 74: $SRC_DIR/build/python_package/pylada/espresso/extract.py:203 74: $SRC_DIR/build/python_package/pylada/espresso/extract.py:203: DeprecationWarning: invalid escape sequence \s 74: @grepper("total \s* stress .*kbar.*\n((?:.*\n){3})", fail=True) 74: 74: build/python_package/pylada/espresso/tests/test_extract.py::test_functional 74: build/python_package/pylada/espresso/tests/test_extract.py::test_initial_structure[structure] 74: build/python_package/pylada/espresso/tests/test_extract.py::test_ions_structure 74: build/python_package/pylada/espresso/tests/test_extract.py::test_cellshape 74: $BUILD_PREFIX/lib/python3.6/site-packages/quantities/quantity.py:395: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. 74: return self.magnitude == other 74: 74: -- Docs: https://docs.pytest.org/en/latest/warnings.html 74: ==================== 12 passed, 7 warnings in 0.43 seconds ===================== 74/82 Test #74: pylada.espresso.extract ................... Passed 0.92 sec test 75 Start 75: pylada.espresso.namelists 75: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/espresso/tests/test_namelists.py" 75: Test timeout computed to be: 10000000 75: ============================= test session starts ============================== 75: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 75: rootdir: $SRC_DIR 75: plugins: bdd-3.1.0 75: collected 27 items 75: 75: ../../python_package/pylada/espresso/tests/test_namelists.py ........... [ 40%] 75: ................ [100%] 75: 75: ========================== 27 passed in 0.56 seconds =========================== 75/82 Test #75: pylada.espresso.namelists ................. Passed 1.07 sec test 76 Start 76: pylada.espresso.pwscf 76: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/espresso/tests/test_pwscf.py" 76: Test timeout computed to be: 10000000 76: ============================= test session starts ============================== 76: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 76: rootdir: $SRC_DIR 76: plugins: bdd-3.1.0 76: collected 16 items 76: 76: ../../python_package/pylada/espresso/tests/test_pwscf.py ............... [ 93%] 76: . [100%] 76: 76: =============================== warnings summary =============================== 76: build/python_package/pylada/espresso/tests/test_pwscf.py::test_attributes_default 76: build/python_package/pylada/espresso/tests/test_pwscf.py::test_traits_do_fail 76: build/python_package/pylada/espresso/tests/test_pwscf.py::test_can_set_attributes 76: build/python_package/pylada/espresso/tests/test_pwscf.py::test_can_add_namelist_attributes 76: build/python_package/pylada/espresso/tests/test_pwscf.py::test_read_aluminum 76: build/python_package/pylada/espresso/tests/test_pwscf.py::test_read_write_loop 76: build/python_package/pylada/espresso/tests/test_pwscf.py::test_bringup 76: build/python_package/pylada/espresso/tests/test_pwscf.py::test_atomic_specie 76: build/python_package/pylada/espresso/tests/test_pwscf.py::test_iteration 76: build/python_package/pylada/espresso/tests/test_pwscf.py::test_add_namelist 76: build/python_package/pylada/espresso/tests/test_pwscf.py::test_add_existing_namelist 76: build/python_package/pylada/espresso/tests/test_pwscf.py::test_ecutwfc_required 76: build/python_package/pylada/espresso/tests/test_pwscf.py::test_dimensional_trait_transform 76: build/python_package/pylada/espresso/tests/test_pwscf.py::test_ions_and_cells_do_not_appear_unless_relaxing 76: build/python_package/pylada/espresso/tests/test_pwscf.py::test_add_forces 76: $BUILD_PREFIX/lib/python3.6/site-packages/quantities/quantity.py:395: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. 76: return self.magnitude == other 76: 76: -- Docs: https://docs.pytest.org/en/latest/warnings.html 76: ==================== 16 passed, 15 warnings in 0.91 seconds ==================== 76/82 Test #76: pylada.espresso.pwscf ..................... Passed 1.41 sec test 77 Start 77: pylada.espresso.structure 77: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/espresso/tests/test_structure.py" 77: Test timeout computed to be: 10000000 77: ============================= test session starts ============================== 77: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 77: rootdir: $SRC_DIR 77: plugins: bdd-3.1.0 77: collected 22 items 77: 77: ../../python_package/pylada/espresso/tests/test_structure.py ........... [ 50%] 77: ........... [100%] 77: 77: ========================== 22 passed in 0.38 seconds =========================== 77/82 Test #77: pylada.espresso.structure ................. Passed 0.86 sec test 78 Start 78: pylada.espresso.trait_types 78: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/espresso/tests/test_trait_types.py" 78: Test timeout computed to be: 10000000 78: ============================= test session starts ============================== 78: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 78: rootdir: $SRC_DIR 78: plugins: bdd-3.1.0 78: collected 10 items 78: 78: ../../python_package/pylada/espresso/tests/test_trait_types.py ......... [ 90%] 78: . [100%] 78: 78: ========================== 10 passed in 0.32 seconds =========================== 78/82 Test #78: pylada.espresso.trait_types ............... Passed 0.82 sec test 79 Start 79: pylada.espresso.tests.bdd.restart 79: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/espresso/tests/bdd/test_restart.py" 79: Test timeout computed to be: 10000000 79: ============================= test session starts ============================== 79: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 79: rootdir: $SRC_DIR 79: plugins: bdd-3.1.0 79: collected 2 items 79: 79: ../../../python_package/pylada/espresso/tests/bdd/test_restart.py .. [100%] 79: 79: =============================== warnings summary =============================== 79: build/python_package/pylada/espresso/tests/bdd/test_restart.py::test_check_restart_input 79: build/python_package/pylada/espresso/tests/bdd/test_restart.py::test_check_restarted_run 79: $BUILD_PREFIX/lib/python3.6/site-packages/quantities/quantity.py:395: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. 79: return self.magnitude == other 79: 79: -- Docs: https://docs.pytest.org/en/latest/warnings.html 79: ===================== 2 passed, 2 warnings in 0.72 seconds ===================== 79/82 Test #79: pylada.espresso.tests.bdd.restart ......... Passed 1.22 sec test 80 Start 80: pylada.espresso.tests.bdd.single_run 80: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/espresso/tests/bdd/test_single_run.py" 80: Test timeout computed to be: 10000000 80: ============================= test session starts ============================== 80: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 80: rootdir: $SRC_DIR 80: plugins: bdd-3.1.0 80: collected 3 items 80: 80: ../../../python_package/pylada/espresso/tests/bdd/test_single_run.py ... [100%] 80: 80: =============================== warnings summary =============================== 80: build/python_package/pylada/espresso/tests/bdd/test_single_run.py::test_nonscf_run 80: build/python_package/pylada/espresso/tests/bdd/test_single_run.py::test_check_iteration_through_first_step 80: build/python_package/pylada/espresso/tests/bdd/test_single_run.py::test_check_iteration_through_the_second_step 80: $BUILD_PREFIX/lib/python3.6/site-packages/quantities/quantity.py:395: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. 80: return self.magnitude == other 80: 80: -- Docs: https://docs.pytest.org/en/latest/warnings.html 80: ===================== 3 passed, 3 warnings in 0.50 seconds ===================== 80/82 Test #80: pylada.espresso.tests.bdd.single_run ...... Passed 1.01 sec test 81 Start 81: pylada.espresso.tests.bdd.writing_input 81: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/espresso/tests/bdd/test_writing_input.py" 81: Test timeout computed to be: 10000000 81: ============================= test session starts ============================== 81: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 81: rootdir: $SRC_DIR 81: plugins: bdd-3.1.0 81: collected 8 items 81: 81: ../../../python_package/pylada/espresso/tests/bdd/test_writing_input.py . [ 12%] 81: ....... [100%] 81: 81: =============================== warnings summary =============================== 81: build/python_package/pylada/espresso/tests/bdd/test_writing_input.py::test_or_writing_its_input 81: build/python_package/pylada/espresso/tests/bdd/test_writing_input.py::test_floating_points_and_arrays_of_integers_and_floating_points 81: $BUILD_PREFIX/lib/python3.6/site-packages/quantities/quantity.py:395: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. 81: return self.magnitude == other 81: 81: -- Docs: https://docs.pytest.org/en/latest/warnings.html 81: ===================== 8 passed, 2 warnings in 0.39 seconds ===================== 81/82 Test #81: pylada.espresso.tests.bdd.writing_input ... Passed 0.97 sec test 82 Start 82: pylada.notebooks.notebooks 82: Test command: $SRC_DIR/build/py.test.sh "$SRC_DIR/build/python_package/pylada/notebooks/tests/test_notebooks.py" 82: Test timeout computed to be: 10000000 82: ============================= test session starts ============================== 82: platform linux -- Python 3.6.7, pytest-4.4.2, py-1.8.0, pluggy-0.11.0 82: rootdir: $SRC_DIR 82: plugins: bdd-3.1.0 82: collected 2 items 82: 82: ../python_package/pylada/notebooks/tests/test_notebooks.py FF [100%] 82: 82: =================================== FAILURES =================================== 82: ____________________ test_notebooks[Creating a Job Folder] _____________________ 82: 82: tmpdir = local('/tmp/pytest-of-travis/pytest-15/test_notebooks_Creating_a_Job_0') 82: filename = 'Creating a Job Folder' 82: 82: @mark.parametrize( 82: "filename", ["Creating a Job Folder", "IPython high-throughput interface"]) 82: def test_notebooks(tmpdir, filename): 82: """ Runs a given notebook in a tmpdir """ 82: import pylada 82: from os.path import join, dirname 82: from nbformat import read 82: from nbconvert.preprocessors import ExecutePreprocessor 82: from sys import version_info 82: directory = join(dirname(pylada.__file__), 'notebooks') 82: with open(join(directory, filename + ".ipynb")) as notebook_file: 82: notebook = read(notebook_file, as_version=4) 82: preprocessor = ExecutePreprocessor(kernel_name='python%i' % 82: version_info.major) 82: > preprocessor.preprocess(notebook, {'metadata': {'path': str(tmpdir)}}) 82: 82: ../python_package/pylada/notebooks/tests/test_notebooks.py:19: 82: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 82: ../../../_build_env/lib/python3.6/site-packages/nbconvert/preprocessors/execute.py:381: in preprocess 82: nb, resources = super(ExecutePreprocessor, self).preprocess(nb, resources) 82: ../../../_build_env/lib/python3.6/site-packages/nbconvert/preprocessors/base.py:69: in preprocess 82: nb.cells[index], resources = self.preprocess_cell(cell, resources, index) 82: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 82: 82: self = 82: cell = {'cell_type': 'code', 'execution_count': 13, 'metadata': {'collapsed': False}, 'outputs': [{'output_type': 'stream', '...edProcessError\x1b[0m: Command 'b'tree tmp/\\n'' returned non-zero exit status 127."]}], 'source': '%%bash\ntree tmp/'} 82: resources = {'metadata': {'path': '/tmp/pytest-of-travis/pytest-15/test_notebooks_Creating_a_Job_0'}} 82: cell_index = 27 82: 82: def preprocess_cell(self, cell, resources, cell_index): 82: """ 82: Executes a single code cell. See base.py for details. 82: 82: To execute all cells see :meth:`preprocess`. 82: """ 82: if cell.cell_type != 'code' or not cell.source.strip(): 82: return cell, resources 82: 82: reply, outputs = self.run_cell(cell, cell_index) 82: # Backwards compatability for processes that wrap run_cell 82: cell.outputs = outputs 82: 82: cell_allows_errors = (self.allow_errors or "raises-exception" 82: in cell.metadata.get("tags", [])) 82: 82: if self.force_raise_errors or not cell_allows_errors: 82: for out in cell.outputs: 82: if out.output_type == 'error': 82: > raise CellExecutionError.from_cell_and_msg(cell, out) 82: E nbconvert.preprocessors.execute.CellExecutionError: An error occurred while executing the following cell: 82: E ------------------ 82: E %%bash 82: E tree tmp/ 82: E ------------------ 82: E 82: E --------------------------------------------------------------------------- 82: E CalledProcessError Traceback (most recent call last) 82: E  in  82: E ----> 1 get_ipython().run_cell_magic('bash', '', 'tree tmp/\n') 82: E  82: E ~/miniconda/conda-bld/pylada_1557617043166/_build_env/lib/python3.6/site-packages/IPython/core/interactiveshell.py in run_cell_magic(self, magic_name, line, cell) 82: E  2350 with self.builtin_trap: 82: E  2351 args = (magic_arg_s, cell) 82: E -> 2352 result = fn(*args, **kwargs) 82: E  2353 return result 82: E  2354  82: E 82: E ~/miniconda/conda-bld/pylada_1557617043166/_build_env/lib/python3.6/site-packages/IPython/core/magics/script.py in named_script_magic(line, cell) 82: E  140 else: 82: E  141 line = script 82: E --> 142 return self.shebang(line, cell) 82: E  143  82: E  144 # write a basic docstring: 82: E 82: E <$BUILD_PREFIX/lib/python3.6/site-packages/decorator.py:decorator-gen-110> in shebang(self, line, cell) 82: E 82: E ~/miniconda/conda-bld/pylada_1557617043166/_build_env/lib/python3.6/site-packages/IPython/core/magic.py in (f, *a, **k) 82: E  185 # but it's overkill for just that one bit of state. 82: E  186 def magic_deco(arg): 82: E --> 187 call = lambda f, *a, **k: f(*a, **k) 82: E  188  82: E  189 if callable(arg): 82: E 82: E ~/miniconda/conda-bld/pylada_1557617043166/_build_env/lib/python3.6/site-packages/IPython/core/magics/script.py in shebang(self, line, cell) 82: E  243 sys.stderr.flush() 82: E  244 if args.raise_error and p.returncode!=0: 82: E --> 245 raise CalledProcessError(p.returncode, cell, output=out, stderr=err) 82: E  246  82: E  247 def _run_script(self, p, cell, to_close): 82: E 82: E CalledProcessError: Command 'b'tree tmp/\n'' returned non-zero exit status 127. 82: E CalledProcessError: Command 'b'tree tmp/\n'' returned non-zero exit status 127. 82: 82: ../../../_build_env/lib/python3.6/site-packages/nbconvert/preprocessors/execute.py:424: CellExecutionError 82: ______________ test_notebooks[IPython high-throughput interface] _______________ 82: 82: tmpdir = local('/tmp/pytest-of-travis/pytest-15/test_notebooks_IPython_high_th0') 82: filename = 'IPython high-throughput interface' 82: 82: @mark.parametrize( 82: "filename", ["Creating a Job Folder", "IPython high-throughput interface"]) 82: def test_notebooks(tmpdir, filename): 82: """ Runs a given notebook in a tmpdir """ 82: import pylada 82: from os.path import join, dirname 82: from nbformat import read 82: from nbconvert.preprocessors import ExecutePreprocessor 82: from sys import version_info 82: directory = join(dirname(pylada.__file__), 'notebooks') 82: with open(join(directory, filename + ".ipynb")) as notebook_file: 82: notebook = read(notebook_file, as_version=4) 82: preprocessor = ExecutePreprocessor(kernel_name='python%i' % 82: version_info.major) 82: > preprocessor.preprocess(notebook, {'metadata': {'path': str(tmpdir)}}) 82: 82: ../python_package/pylada/notebooks/tests/test_notebooks.py:19: 82: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 82: ../../../_build_env/lib/python3.6/site-packages/nbconvert/preprocessors/execute.py:381: in preprocess 82: nb, resources = super(ExecutePreprocessor, self).preprocess(nb, resources) 82: ../../../_build_env/lib/python3.6/site-packages/nbconvert/preprocessors/base.py:69: in preprocess 82: nb.cells[index], resources = self.preprocess_cell(cell, resources, index) 82: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 82: 82: self = 82: cell = {'cell_type': 'code', 'execution_count': 25, 'metadata': {'collapsed': False}, 'outputs': [{'output_type': 'stream', '...[0;31mCalledProcessError\x1b[0m: Command 'b'tree\\n'' returned non-zero exit status 127."]}], 'source': '%%bash\ntree'} 82: resources = {'metadata': {'path': '/tmp/pytest-of-travis/pytest-15/test_notebooks_IPython_high_th0'}} 82: cell_index = 51 82: 82: def preprocess_cell(self, cell, resources, cell_index): 82: """ 82: Executes a single code cell. See base.py for details. 82: 82: To execute all cells see :meth:`preprocess`. 82: """ 82: if cell.cell_type != 'code' or not cell.source.strip(): 82: return cell, resources 82: 82: reply, outputs = self.run_cell(cell, cell_index) 82: # Backwards compatability for processes that wrap run_cell 82: cell.outputs = outputs 82: 82: cell_allows_errors = (self.allow_errors or "raises-exception" 82: in cell.metadata.get("tags", [])) 82: 82: if self.force_raise_errors or not cell_allows_errors: 82: for out in cell.outputs: 82: if out.output_type == 'error': 82: > raise CellExecutionError.from_cell_and_msg(cell, out) 82: E nbconvert.preprocessors.execute.CellExecutionError: An error occurred while executing the following cell: 82: E ------------------ 82: E %%bash 82: E tree 82: E ------------------ 82: E 82: E --------------------------------------------------------------------------- 82: E CalledProcessError Traceback (most recent call last) 82: E  in  82: E ----> 1 get_ipython().run_cell_magic('bash', '', 'tree\n') 82: E  82: E ~/miniconda/conda-bld/pylada_1557617043166/_build_env/lib/python3.6/site-packages/IPython/core/interactiveshell.py in run_cell_magic(self, magic_name, line, cell) 82: E  2350 with self.builtin_trap: 82: E  2351 args = (magic_arg_s, cell) 82: E -> 2352 result = fn(*args, **kwargs) 82: E  2353 return result 82: E  2354  82: E 82: E ~/miniconda/conda-bld/pylada_1557617043166/_build_env/lib/python3.6/site-packages/IPython/core/magics/script.py in named_script_magic(line, cell) 82: E  140 else: 82: E  141 line = script 82: E --> 142 return self.shebang(line, cell) 82: E  143  82: E  144 # write a basic docstring: 82: E 82: E <$BUILD_PREFIX/lib/python3.6/site-packages/decorator.py:decorator-gen-110> in shebang(self, line, cell) 82: E 82: E ~/miniconda/conda-bld/pylada_1557617043166/_build_env/lib/python3.6/site-packages/IPython/core/magic.py in (f, *a, **k) 82: E  185 # but it's overkill for just that one bit of state. 82: E  186 def magic_deco(arg): 82: E --> 187 call = lambda f, *a, **k: f(*a, **k) 82: E  188  82: E  189 if callable(arg): Errors while running CTest WARNING: symlink_conda() is deprecated. WARNING: symlink_conda() is deprecated. 82: E 82: E ~/miniconda/conda-bld/pylada_1557617043166/_build_env/lib/python3.6/site-packages/IPython/core/magics/script.py in shebang(self, line, cell) 82: E  243 sys.stderr.flush() 82: E  244 if args.raise_error and p.returncode!=0: 82: E --> 245 raise CalledProcessError(p.returncode, cell, output=out, stderr=err) 82: E  246  82: E  247 def _run_script(self, p, cell, to_close): 82: E 82: E CalledProcessError: Command 'b'tree\n'' returned non-zero exit status 127. 82: E CalledProcessError: Command 'b'tree\n'' returned non-zero exit status 127. 82: 82: ../../../_build_env/lib/python3.6/site-packages/nbconvert/preprocessors/execute.py:424: CellExecutionError 82: =============================== warnings summary =============================== 82: build/python_package/pylada/notebooks/tests/test_notebooks.py::test_notebooks[Creating a Job Folder] 82: $BUILD_PREFIX/lib/python3.6/site-packages/jupyter_client/session.py:371: DeprecationWarning: Session._key_changed is deprecated in traitlets 4.1: use @observe and @unobserve instead. 82: def _key_changed(self): 82: 82: -- Docs: https://docs.pytest.org/en/latest/warnings.html 82: ===================== 2 failed, 1 warnings in 7.48 seconds ===================== 82/82 Test #82: pylada.notebooks.notebooks ................***Failed 8.22 sec 91% tests passed, 7 tests failed out of 82 Label Time Summary: crystal = 61.28 sec*proc (16 tests) decorations = 139.23 sec*proc (7 tests) espresso = 9.12 sec*proc (9 tests) ewald = 7.04 sec*proc (1 test) extract = 1.71 sec*proc (2 tests) incar = 8.29 sec*proc (10 tests) input = 2.62 sec*proc (3 tests) ipython = 2.58 sec*proc (2 tests) jobfolder = 70.00 sec*proc (6 tests) mpi = 0.02 sec*proc (1 test) notebooks = 8.22 sec*proc (1 test) process = 70.74 sec*proc (6 tests) pytest = 332.79 sec*proc (79 tests) python = 335.40 sec*proc (82 tests) tools = 3.43 sec*proc (4 tests) vasp = 29.95 sec*proc (32 tests) Total Test time (real) = 335.44 sec The following tests FAILED: 6 - pylada.crystal.map_sites (Failed) 61 - pifunctional (Failed) 62 - pylada.process.call (Failed) 63 - pylada.process.iterator (Failed) 64 - pylada.process.program (Failed) 65 - pylada.process.jobfolder (Failed) 82 - pylada.notebooks.notebooks (Failed) Traceback (most recent call last): File "/home/travis/miniconda/bin/conda-build", line 11, in sys.exit(main()) File "/home/travis/miniconda/lib/python3.7/site-packages/conda_build/cli/main_build.py", line 456, in main execute(sys.argv[1:]) File "/home/travis/miniconda/lib/python3.7/site-packages/conda_build/cli/main_build.py", line 447, in execute verify=args.verify, variants=args.variants) File "/home/travis/miniconda/lib/python3.7/site-packages/conda_build/api.py", line 208, in build notest=notest, need_source_download=need_source_download, variants=variants) File "/home/travis/miniconda/lib/python3.7/site-packages/conda_build/build.py", line 2314, in build_tree notest=notest, File "/home/travis/miniconda/lib/python3.7/site-packages/conda_build/build.py", line 1477, in build cwd=src_dir, stats=build_stats) File "/home/travis/miniconda/lib/python3.7/site-packages/conda_build/utils.py", line 374, in check_call_env return _func_defaulting_env_to_os_environ('call', *popenargs, **kwargs) File "/home/travis/miniconda/lib/python3.7/site-packages/conda_build/utils.py", line 354, in _func_defaulting_env_to_os_environ raise subprocess.CalledProcessError(proc.returncode, _args) subprocess.CalledProcessError: Command '['/bin/bash', '-e', '/home/travis/miniconda/conda-bld/pylada_1557617043166/work/conda_build.sh']' returned non-zero exit status 8. travis_time:end:103a4250:start=1557617042434664259,finish=1557617711189164148,duration=668754499889 The command "if [[ "$TRAVIS_PULL_REQUEST" != "false" ]]; then bash -x ./conda_build.sh; else bash -x ./conda_upload.sh; fi" exited with 1. Done. Your build exited with 1.