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"pip install ." fails on Python 3.3 (with symlinks in local directory) #1006

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myint opened this Issue Jun 24, 2013 · 8 comments

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myint commented Jun 24, 2013

This seems to happen only if there are symlinks in the local directory. (In my case, the symlinks are from temporary build files.)

$ pip install   .
Unpacking /Users/myint/projects/docformatter
Cleaning up...
Exception:
Traceback (most recent call last):
  File "/Users/myint/Library/Python/3.3/lib/python/site-packages/pip/basecommand.py", line 134, in main
    status = self.run(options, args)
  File "/Users/myint/Library/Python/3.3/lib/python/site-packages/pip/commands/install.py", line 235, in run
    requirement_set.prepare_files(finder, force_root_egg_info=self.bundle, bundle=self.bundle)
  File "/Users/myint/Library/Python/3.3/lib/python/site-packages/pip/req.py", line 1084, in prepare_files
    self.unpack_url(url, location, self.is_download)
  File "/Users/myint/Library/Python/3.3/lib/python/site-packages/pip/req.py", line 1224, in unpack_url
    return unpack_file_url(link, loc)
  File "/Users/myint/Library/Python/3.3/lib/python/site-packages/pip/download.py", line 422, in unpack_file_url
    shutil.copytree(source, location)
  File "/opt/local/Library/Frameworks/Python.framework/Versions/3.3/lib/python3.3/shutil.py", line 343, in copytree
    raise Error(errors)
shutil.Error: [('/Users/myint/projects/docformatter/.travis-solo/2.6/include/python2.6', '/var/folders/eD/eDkaCQuWHJG9f-G6kmkpgk+++TI/-Tmp-/pip-5g3qy6-build/.travis-solo/2.6/include/python2.6', "[Errno 21] Is a directory: '/Users/myint/projects/docformatter/.travis-solo/2.6/include/python2.6'"), ('/Users/myint/projects/docformatter/.travis-solo/2.6/lib/python2.6/config', '/var/folders/eD/eDkaCQuWHJG9f-G6kmkpgk+++TI/-Tmp-/pip-5g3qy6-build/.travis-solo/2.6/lib/python2.6/config', "[Errno 21] Is a directory: '/Users/myint/projects/docformatter/.travis-solo/2.6/lib/python2.6/config'"), ('/Users/myint/projects/docformatter/.travis-solo/2.6/lib/python2.6/encodings', '/var/folders/eD/eDkaCQuWHJG9f-G6kmkpgk+++TI/-Tmp-/pip-5g3qy6-build/.travis-solo/2.6/lib/python2.6/encodings', "[Errno 21] Is a directory: '/Users/myint/projects/docformatter/.travis-solo/2.6/lib/python2.6/encodings'"), ('/Users/myint/projects/docformatter/.travis-solo/2.6/lib/python2.6/lib-dynload', '/var/folders/eD/eDkaCQuWHJG9f-G6kmkpgk+++TI/-Tmp-/pip-5g3qy6-build/.travis-solo/2.6/lib/python2.6/lib-dynload', "[Errno 21] Is a directory: '/Users/myint/projects/docformatter/.travis-solo/2.6/lib/python2.6/lib-dynload'"), ('/Users/myint/projects/docformatter/.travis-solo/2.7/include/python2.7', '/var/folders/eD/eDkaCQuWHJG9f-G6kmkpgk+++TI/-Tmp-/pip-5g3qy6-build/.travis-solo/2.7/include/python2.7', "[Errno 21] Is a directory: '/Users/myint/projects/docformatter/.travis-solo/2.7/include/python2.7'"), ('/Users/myint/projects/docformatter/.travis-solo/2.7/lib/python2.7/config', '/var/folders/eD/eDkaCQuWHJG9f-G6kmkpgk+++TI/-Tmp-/pip-5g3qy6-build/.travis-solo/2.7/lib/python2.7/config', "[Errno 21] Is a directory: '/Users/myint/projects/docformatter/.travis-solo/2.7/lib/python2.7/config'"), ('/Users/myint/projects/docformatter/.travis-solo/2.7/lib/python2.7/encodings', '/var/folders/eD/eDkaCQuWHJG9f-G6kmkpgk+++TI/-Tmp-/pip-5g3qy6-build/.travis-solo/2.7/lib/python2.7/encodings', "[Errno 21] Is a directory: '/Users/myint/projects/docformatter/.travis-solo/2.7/lib/python2.7/encodings'"), ('/Users/myint/projects/docformatter/.travis-solo/2.7/lib/python2.7/lib-dynload', '/var/folders/eD/eDkaCQuWHJG9f-G6kmkpgk+++TI/-Tmp-/pip-5g3qy6-build/.travis-solo/2.7/lib/python2.7/lib-dynload', "[Errno 21] Is a directory: '/Users/myint/projects/docformatter/.travis-solo/2.7/lib/python2.7/lib-dynload'"), ('/Users/myint/projects/docformatter/.travis-solo/3.2/include/python3.2m', '/var/folders/eD/eDkaCQuWHJG9f-G6kmkpgk+++TI/-Tmp-/pip-5g3qy6-build/.travis-solo/3.2/include/python3.2m', "[Errno 21] Is a directory: '/Users/myint/projects/docformatter/.travis-solo/3.2/include/python3.2m'"), ('/Users/myint/projects/docformatter/.travis-solo/3.2/lib/python3.2/config-3.2m', '/var/folders/eD/eDkaCQuWHJG9f-G6kmkpgk+++TI/-Tmp-/pip-5g3qy6-build/.travis-solo/3.2/lib/python3.2/config-3.2m', "[Errno 21] Is a directory: '/Users/myint/projects/docformatter/.travis-solo/3.2/lib/python3.2/config-3.2m'"), ('/Users/myint/projects/docformatter/.travis-solo/3.2/lib/python3.2/encodings', '/var/folders/eD/eDkaCQuWHJG9f-G6kmkpgk+++TI/-Tmp-/pip-5g3qy6-build/.travis-solo/3.2/lib/python3.2/encodings', "[Errno 21] Is a directory: '/Users/myint/projects/docformatter/.travis-solo/3.2/lib/python3.2/encodings'"), ('/Users/myint/projects/docformatter/.travis-solo/3.2/lib/python3.2/lib-dynload', '/var/folders/eD/eDkaCQuWHJG9f-G6kmkpgk+++TI/-Tmp-/pip-5g3qy6-build/.travis-solo/3.2/lib/python3.2/lib-dynload', "[Errno 21] Is a directory: '/Users/myint/projects/docformatter/.travis-solo/3.2/lib/python3.2/lib-dynload'"), ('/Users/myint/projects/docformatter/.travis-solo/3.3/include/python3.3m', '/var/folders/eD/eDkaCQuWHJG9f-G6kmkpgk+++TI/-Tmp-/pip-5g3qy6-build/.travis-solo/3.3/include/python3.3m', "[Errno 21] Is a directory: '/Users/myint/projects/docformatter/.travis-solo/3.3/include/python3.3m'"), ('/Users/myint/projects/docformatter/.travis-solo/3.3/lib/python3.3/collections', '/var/folders/eD/eDkaCQuWHJG9f-G6kmkpgk+++TI/-Tmp-/pip-5g3qy6-build/.travis-solo/3.3/lib/python3.3/collections', "[Errno 21] Is a directory: '/Users/myint/projects/docformatter/.travis-solo/3.3/lib/python3.3/collections'"), ('/Users/myint/projects/docformatter/.travis-solo/3.3/lib/python3.3/config-3.3m', '/var/folders/eD/eDkaCQuWHJG9f-G6kmkpgk+++TI/-Tmp-/pip-5g3qy6-build/.travis-solo/3.3/lib/python3.3/config-3.3m', "[Errno 21] Is a directory: '/Users/myint/projects/docformatter/.travis-solo/3.3/lib/python3.3/config-3.3m'"), ('/Users/myint/projects/docformatter/.travis-solo/3.3/lib/python3.3/encodings', '/var/folders/eD/eDkaCQuWHJG9f-G6kmkpgk+++TI/-Tmp-/pip-5g3qy6-build/.travis-solo/3.3/lib/python3.3/encodings', "[Errno 21] Is a directory: '/Users/myint/projects/docformatter/.travis-solo/3.3/lib/python3.3/encodings'"), ('/Users/myint/projects/docformatter/.travis-solo/3.3/lib/python3.3/importlib', '/var/folders/eD/eDkaCQuWHJG9f-G6kmkpgk+++TI/-Tmp-/pip-5g3qy6-build/.travis-solo/3.3/lib/python3.3/importlib', "[Errno 21] Is a directory: '/Users/myint/projects/docformatter/.travis-solo/3.3/lib/python3.3/importlib'"), ('/Users/myint/projects/docformatter/.travis-solo/3.3/lib/python3.3/lib-dynload', '/var/folders/eD/eDkaCQuWHJG9f-G6kmkpgk+++TI/-Tmp-/pip-5g3qy6-build/.travis-solo/3.3/lib/python3.3/lib-dynload', "[Errno 21] Is a directory: '/Users/myint/projects/docformatter/.travis-solo/3.3/lib/python3.3/lib-dynload'"), ('/Users/myint/projects/docformatter/.travis-solo/3.3/lib/python3.3/plat-darwin', '/var/folders/eD/eDkaCQuWHJG9f-G6kmkpgk+++TI/-Tmp-/pip-5g3qy6-build/.travis-solo/3.3/lib/python3.3/plat-darwin', "[Errno 21] Is a directory: '/Users/myint/projects/docformatter/.travis-solo/3.3/lib/python3.3/plat-darwin'"), ('/Users/myint/projects/docformatter/.travis-solo/pypy/include', '/var/folders/eD/eDkaCQuWHJG9f-G6kmkpgk+++TI/-Tmp-/pip-5g3qy6-build/.travis-solo/pypy/include', "[Errno 21] Is a directory: '/Users/myint/projects/docformatter/.travis-solo/pypy/include'"), ('/Users/myint/projects/docformatter/.travis-solo/pypy/lib-python/2.7/encodings', '/var/folders/eD/eDkaCQuWHJG9f-G6kmkpgk+++TI/-Tmp-/pip-5g3qy6-build/.travis-solo/pypy/lib-python/2.7/encodings', "[Errno 21] Is a directory: '/Users/myint/projects/docformatter/.travis-solo/pypy/lib-python/2.7/encodings'"), ('/Users/myint/projects/docformatter/.travis-solo/python2.6/include/python2.6', '/var/folders/eD/eDkaCQuWHJG9f-G6kmkpgk+++TI/-Tmp-/pip-5g3qy6-build/.travis-solo/python2.6/include/python2.6', "[Errno 21] Is a directory: '/Users/myint/projects/docformatter/.travis-solo/python2.6/include/python2.6'"), ('/Users/myint/projects/docformatter/.travis-solo/python2.6/lib/python2.6/config', '/var/folders/eD/eDkaCQuWHJG9f-G6kmkpgk+++TI/-Tmp-/pip-5g3qy6-build/.travis-solo/python2.6/lib/python2.6/config', "[Errno 21] Is a directory: '/Users/myint/projects/docformatter/.travis-solo/python2.6/lib/python2.6/config'"), ('/Users/myint/projects/docformatter/.travis-solo/python2.6/lib/python2.6/encodings', '/var/folders/eD/eDkaCQuWHJG9f-G6kmkpgk+++TI/-Tmp-/pip-5g3qy6-build/.travis-solo/python2.6/lib/python2.6/encodings', "[Errno 21] Is a directory: '/Users/myint/projects/docformatter/.travis-solo/python2.6/lib/python2.6/encodings'"), ('/Users/myint/projects/docformatter/.travis-solo/python2.6/lib/python2.6/lib-dynload', '/var/folders/eD/eDkaCQuWHJG9f-G6kmkpgk+++TI/-Tmp-/pip-5g3qy6-build/.travis-solo/python2.6/lib/python2.6/lib-dynload', "[Errno 21] Is a directory: '/Users/myint/projects/docformatter/.travis-solo/python2.6/lib/python2.6/lib-dynload'"), ('/Users/myint/projects/docformatter/.travis-solo/python2.7/include/python2.7', '/var/folders/eD/eDkaCQuWHJG9f-G6kmkpgk+++TI/-Tmp-/pip-5g3qy6-build/.travis-solo/python2.7/include/python2.7', "[Errno 21] Is a directory: '/Users/myint/projects/docformatter/.travis-solo/python2.7/include/python2.7'"), ('/Users/myint/projects/docformatter/.travis-solo/python2.7/lib/python2.7/config', '/var/folders/eD/eDkaCQuWHJG9f-G6kmkpgk+++TI/-Tmp-/pip-5g3qy6-build/.travis-solo/python2.7/lib/python2.7/config', "[Errno 21] Is a directory: '/Users/myint/projects/docformatter/.travis-solo/python2.7/lib/python2.7/config'"), ('/Users/myint/projects/docformatter/.travis-solo/python2.7/lib/python2.7/encodings', '/var/folders/eD/eDkaCQuWHJG9f-G6kmkpgk+++TI/-Tmp-/pip-5g3qy6-build/.travis-solo/python2.7/lib/python2.7/encodings', "[Errno 21] Is a directory: '/Users/myint/projects/docformatter/.travis-solo/python2.7/lib/python2.7/encodings'"), ('/Users/myint/projects/docformatter/.travis-solo/python2.7/lib/python2.7/lib-dynload', '/var/folders/eD/eDkaCQuWHJG9f-G6kmkpgk+++TI/-Tmp-/pip-5g3qy6-build/.travis-solo/python2.7/lib/python2.7/lib-dynload', "[Errno 21] Is a directory: '/Users/myint/projects/docformatter/.travis-solo/python2.7/lib/python2.7/lib-dynload'"), ('/Users/myint/projects/docformatter/.travis-solo/python3.2/include/python3.2m', '/var/folders/eD/eDkaCQuWHJG9f-G6kmkpgk+++TI/-Tmp-/pip-5g3qy6-build/.travis-solo/python3.2/include/python3.2m', "[Errno 21] Is a directory: '/Users/myint/projects/docformatter/.travis-solo/python3.2/include/python3.2m'"), ('/Users/myint/projects/docformatter/.travis-solo/python3.2/lib/python3.2/config-3.2m', '/var/folders/eD/eDkaCQuWHJG9f-G6kmkpgk+++TI/-Tmp-/pip-5g3qy6-build/.travis-solo/python3.2/lib/python3.2/config-3.2m', "[Errno 21] Is a directory: '/Users/myint/projects/docformatter/.travis-solo/python3.2/lib/python3.2/config-3.2m'"), ('/Users/myint/projects/docformatter/.travis-solo/python3.2/lib/python3.2/encodings', '/var/folders/eD/eDkaCQuWHJG9f-G6kmkpgk+++TI/-Tmp-/pip-5g3qy6-build/.travis-solo/python3.2/lib/python3.2/encodings', "[Errno 21] Is a directory: '/Users/myint/projects/docformatter/.travis-solo/python3.2/lib/python3.2/encodings'"), ('/Users/myint/projects/docformatter/.travis-solo/python3.2/lib/python3.2/lib-dynload', '/var/folders/eD/eDkaCQuWHJG9f-G6kmkpgk+++TI/-Tmp-/pip-5g3qy6-build/.travis-solo/python3.2/lib/python3.2/lib-dynload', "[Errno 21] Is a directory: '/Users/myint/projects/docformatter/.travis-solo/python3.2/lib/python3.2/lib-dynload'"), ('/Users/myint/projects/docformatter/.travis-solo/python3.3/include/python3.3m', '/var/folders/eD/eDkaCQuWHJG9f-G6kmkpgk+++TI/-Tmp-/pip-5g3qy6-build/.travis-solo/python3.3/include/python3.3m', "[Errno 21] Is a directory: '/Users/myint/projects/docformatter/.travis-solo/python3.3/include/python3.3m'"), ('/Users/myint/projects/docformatter/.travis-solo/python3.3/lib/python3.3/collections', '/var/folders/eD/eDkaCQuWHJG9f-G6kmkpgk+++TI/-Tmp-/pip-5g3qy6-build/.travis-solo/python3.3/lib/python3.3/collections', "[Errno 21] Is a directory: '/Users/myint/projects/docformatter/.travis-solo/python3.3/lib/python3.3/collections'"), ('/Users/myint/projects/docformatter/.travis-solo/python3.3/lib/python3.3/config-3.3m', '/var/folders/eD/eDkaCQuWHJG9f-G6kmkpgk+++TI/-Tmp-/pip-5g3qy6-build/.travis-solo/python3.3/lib/python3.3/config-3.3m', "[Errno 21] Is a directory: '/Users/myint/projects/docformatter/.travis-solo/python3.3/lib/python3.3/config-3.3m'"), ('/Users/myint/projects/docformatter/.travis-solo/python3.3/lib/python3.3/encodings', '/var/folders/eD/eDkaCQuWHJG9f-G6kmkpgk+++TI/-Tmp-/pip-5g3qy6-build/.travis-solo/python3.3/lib/python3.3/encodings', "[Errno 21] Is a directory: '/Users/myint/projects/docformatter/.travis-solo/python3.3/lib/python3.3/encodings'"), ('/Users/myint/projects/docformatter/.travis-solo/python3.3/lib/python3.3/importlib', '/var/folders/eD/eDkaCQuWHJG9f-G6kmkpgk+++TI/-Tmp-/pip-5g3qy6-build/.travis-solo/python3.3/lib/python3.3/importlib', "[Errno 21] Is a directory: '/Users/myint/projects/docformatter/.travis-solo/python3.3/lib/python3.3/importlib'"), ('/Users/myint/projects/docformatter/.travis-solo/python3.3/lib/python3.3/lib-dynload', '/var/folders/eD/eDkaCQuWHJG9f-G6kmkpgk+++TI/-Tmp-/pip-5g3qy6-build/.travis-solo/python3.3/lib/python3.3/lib-dynload', "[Errno 21] Is a directory: '/Users/myint/projects/docformatter/.travis-solo/python3.3/lib/python3.3/lib-dynload'"), ('/Users/myint/projects/docformatter/.travis-solo/python3.3/lib/python3.3/plat-darwin', '/var/folders/eD/eDkaCQuWHJG9f-G6kmkpgk+++TI/-Tmp-/pip-5g3qy6-build/.travis-solo/python3.3/lib/python3.3/plat-darwin', "[Errno 21] Is a directory: '/Users/myint/projects/docformatter/.travis-solo/python3.3/lib/python3.3/plat-darwin'")]

Storing complete log in /Users/myint/.pip/pip.log

This seems to be due to shutil.copytree(), which fails if there are symlinks in the source.

@myint myint referenced this issue Jun 24, 2013

Merged

Python 3 support #5

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qwcode Jun 24, 2013

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can you explain the details of your symlink case, or provide a repeatable case. thanks.

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qwcode commented Jun 24, 2013

can you explain the details of your symlink case, or provide a repeatable case. thanks.

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Yeah, it is easy to reproduce.

$ git clone https://github.com/myint/docformatter
$ cd docformatter
$ ln -s /tmp
$ pip install .
Unpacking /Users/myint/projects/docformatter
Cleaning up...
Exception:
Traceback (most recent call last):
  File "/Users/myint/Library/Python/3.3/lib/python/site-packages/pip/basecommand.py", line 134, in main
    status = self.run(options, args)
  File "/Users/myint/Library/Python/3.3/lib/python/site-packages/pip/commands/install.py", line 235, in run
    requirement_set.prepare_files(finder, force_root_egg_info=self.bundle, bundle=self.bundle)
  File "/Users/myint/Library/Python/3.3/lib/python/site-packages/pip/req.py", line 1084, in prepare_files
    self.unpack_url(url, location, self.is_download)
  File "/Users/myint/Library/Python/3.3/lib/python/site-packages/pip/req.py", line 1224, in unpack_url
    return unpack_file_url(link, loc)
  File "/Users/myint/Library/Python/3.3/lib/python/site-packages/pip/download.py", line 420, in unpack_file_url
    shutil.copytree(source, location)
  File "/opt/local/Library/Frameworks/Python.framework/Versions/3.3/lib/python3.3/shutil.py", line 343, in copytree
    raise Error(errors)
shutil.Error: [('/Users/myint/projects/docformatter/tmp', '/var/folders/eD/eDkaCQuWHJG9f-G6kmkpgk+++TI/-Tmp-/pip-ayxv_5-build/tmp', "[Errno 21] Is a directory: '/Users/myint/projects/docformatter/tmp'")]

Note that the error goes away if I set symlinks parameter of shutil.copytree() to True in pip/download.py.

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myint commented Jun 24, 2013

Yeah, it is easy to reproduce.

$ git clone https://github.com/myint/docformatter
$ cd docformatter
$ ln -s /tmp
$ pip install .
Unpacking /Users/myint/projects/docformatter
Cleaning up...
Exception:
Traceback (most recent call last):
  File "/Users/myint/Library/Python/3.3/lib/python/site-packages/pip/basecommand.py", line 134, in main
    status = self.run(options, args)
  File "/Users/myint/Library/Python/3.3/lib/python/site-packages/pip/commands/install.py", line 235, in run
    requirement_set.prepare_files(finder, force_root_egg_info=self.bundle, bundle=self.bundle)
  File "/Users/myint/Library/Python/3.3/lib/python/site-packages/pip/req.py", line 1084, in prepare_files
    self.unpack_url(url, location, self.is_download)
  File "/Users/myint/Library/Python/3.3/lib/python/site-packages/pip/req.py", line 1224, in unpack_url
    return unpack_file_url(link, loc)
  File "/Users/myint/Library/Python/3.3/lib/python/site-packages/pip/download.py", line 420, in unpack_file_url
    shutil.copytree(source, location)
  File "/opt/local/Library/Frameworks/Python.framework/Versions/3.3/lib/python3.3/shutil.py", line 343, in copytree
    raise Error(errors)
shutil.Error: [('/Users/myint/projects/docformatter/tmp', '/var/folders/eD/eDkaCQuWHJG9f-G6kmkpgk+++TI/-Tmp-/pip-ayxv_5-build/tmp', "[Errno 21] Is a directory: '/Users/myint/projects/docformatter/tmp'")]

Note that the error goes away if I set symlinks parameter of shutil.copytree() to True in pip/download.py.

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Any thoughts on my fix?

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myint commented Jul 12, 2013

Any thoughts on my fix?

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copytree in py2 doesn't trigger these errors. did you discover the reason py3.3 behaves like this?

to be clear, the failure is occuring when copying from src to the build location, not when installing.
you're not intending to install a symlink are you?

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qwcode commented Aug 25, 2013

copytree in py2 doesn't trigger these errors. did you discover the reason py3.3 behaves like this?

to be clear, the failure is occuring when copying from src to the build location, not when installing.
you're not intending to install a symlink are you?

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FWIW Python 3.3 changed the way rmtree() worked, it's possible they also changed the way copytree() worked too.

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dstufft commented Aug 25, 2013

FWIW Python 3.3 changed the way rmtree() worked, it's possible they also changed the way copytree() worked too.

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Right, copytree() is just implemented differently in Python 3.

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myint commented Aug 25, 2013

Right, copytree() is just implemented differently in Python 3.

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Also, correct, the symlink is not meant to be installed. The symlink is just some temporary file (as in the contents of .tox or a virtualenv, which include symlinks to various locations).

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myint commented Aug 25, 2013

Also, correct, the symlink is not meant to be installed. The symlink is just some temporary file (as in the contents of .tox or a virtualenv, which include symlinks to various locations).

mwilliamson added a commit to mwilliamson/pip that referenced this issue Nov 10, 2013

Keep symlinks as symlinks when installing
Without this, "pip install" crashes when encountering symlinks that
point to external paths. The culprit is "shutil.copytree()", which
throws an error in such cases if the "symlinks" parameter is not set to
"True".

This fixes pypa#1006.
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myint Nov 12, 2013

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Apparently this was already reported over a year go in #611. And it was fixed, but never merged, in #813.

Contributor

myint commented Nov 12, 2013

Apparently this was already reported over a year go in #611. And it was fixed, but never merged, in #813.

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