Do not scan whole file tree when making MANIFEST

When building a MANIFEST from a MANIFEST.in, setuptools previously
scanned the whole directory tree in to a list, and then picked matching
files based on MANIFEST.in commands from this list.

Now, files are found using the `glob` library from Python 3.5. This only
explores directories that need to be scanned, resulting in a large speed
improvement for projects with large file trees. A modified `glob`
module has been included. It has been changed to support back to
Python 2.6, and to include `.hidden` files in its matches. The previous
functionality included `.hidden` files in its glob matches. It is
unclear if this behaviour is desired and required, or accidental and not
required, but for strict backwards-compatibility, this behaviour is
kept.

Each command in the MANIFEST.in is now represented by its own function
on the FileList (`include`, `exclude`, `graft`, etc.) to allow for an
efficient implementation. The previous commands
`FileList.include_pattern` and `FileList.exclude_pattern` still
exist for backwards compatibility, but these use the slow 'scan all
files' method, so are discouraged. `global_include` by its nature must
scan all directories in the project to work, so this does not receive
any speed improvements.

The changes will speed up creating packages for the vast majority of
users. There are a few unusual corner cases, such as multiple `graft`
commands operating on the same set of directories, that will be slower.
These can be solved by consolidating the overlapping `graft` commands in
to one command.

setuptools/command/egg_info.py

@@ -2,40 +2,123 @@
 
 Create a distribution's .egg-info directory and contents"""
 
-from distutils.filelist import FileList as _FileList
-from distutils.util import convert_path
-from distutils import log
+import collections
 import distutils.errors
 import distutils.filelist
+import io
 import os
 import re
 import sys
-import io
-import warnings
 import time
-import collections
-
-from setuptools.extern import six
-from setuptools.extern.six.moves import map
+import warnings
+from distutils import log
+from distutils.filelist import FileList as _FileList
+from distutils.filelist import translate_pattern
+from distutils.util import convert_path
+from fnmatch import translate
 
-from setuptools import Command
-from setuptools.command.sdist import sdist
-from setuptools.command.sdist import walk_revctrl
-from setuptools.command.setopt import edit_config
-from setuptools.command import bdist_egg
-from pkg_resources import (
-    parse_requirements, safe_name, parse_version,
-    safe_version, yield_lines, EntryPoint, iter_entry_points, to_filename)
 import setuptools.unicode_utils as unicode_utils
-
+from pkg_resources import (
+    EntryPoint, iter_entry_points, parse_requirements, parse_version, safe_name,
+    safe_version, to_filename, yield_lines)
 from pkg_resources.extern import packaging
+from setuptools import Command
+from setuptools.command import bdist_egg
+from setuptools.command.sdist import sdist, walk_revctrl
+from setuptools.command.setopt import edit_config
+from setuptools.extern import six
+from setuptools.extern.six.moves import map
+from setuptools.glob import glob
 
 try:
     from setuptools_svn import svn_utils
 except ImportError:
     pass
 
 
+
+def translate_pattern(glob):
+    """
+    Translate a file path glob like '*.txt' in to a regular expression.
+    This differs from fnmatch.translate which allows wildcards to match
+    directory separators. It also knows about '**/' which matches any number of
+    directories.
+    """
+    pat = ''
+
+    # This will split on '/' within [character classes]. This is deliberate.
+    chunks = glob.split(os.path.sep)
+
+    sep = re.escape(os.sep)
+    valid_char = '[^%s]' % (sep,)
+
+    for c, chunk in enumerate(chunks):
+        last_chunk = c == len(chunks) - 1
+
+        # Chunks that are a literal ** are globstars. They match anything.
+        if chunk == '**':
+            if last_chunk:
+                # Match anything if this is the last component
+                pat += '.*'
+            else:
+                # Match '(name/)*'
+                pat += '(?:%s+%s)*' % (valid_char, sep)
+            continue  # Break here as the whole path component has been handled
+
+        # Find any special characters in the remainder
+        i = 0
+        chunk_len = len(chunk)
+        while i < chunk_len:
+            char = chunk[i]
+            if char == '*':
+                # Match any number of name characters
+                pat += valid_char + '*'
+            elif char == '?':
+                # Match a name character
+                pat += valid_char
+            elif char == '[':
+                # Character class
+                inner_i = i + 1
+                # Skip initial !/] chars
+                if inner_i < chunk_len and chunk[inner_i] == '!':
+                    inner_i = inner_i + 1
+                if inner_i < chunk_len and chunk[inner_i] == ']':
+                    inner_i = inner_i + 1
+
+                # Loop till the closing ] is found
+                while inner_i < chunk_len and chunk[inner_i] != ']':
+                    inner_i = inner_i + 1
+
+                if inner_i >= chunk_len:
+                    # Got to the end of the string without finding a closing ]
+                    # Do not treat this as a matching group, but as a literal [
+                    pat += re.escape(char)
+                else:
+                    # Grab the insides of the [brackets]
+                    inner = chunk[i + 1:inner_i]
+                    char_class = ''
+
+                    # Class negation
+                    if inner[0] == '!':
+                        char_class = '^'
+                        inner = inner[1:]
+
+                    char_class += re.escape(inner)
+                    pat += '[%s]' % (char_class,)
+
+                    # Skip to the end ]
+                    i = inner_i
+            else:
+                pat += re.escape(char)
+            i += 1
+
+        # Join each chunk with the dir separator
+        if not last_chunk:
+            pat += sep
+
+    return re.compile(pat + r'\Z(?ms)')
+
+
 class egg_info(Command):
     description = "create a distribution's .egg-info directory"
 
@@ -239,7 +322,151 @@ def check_broken_egg_info(self):
 
 
 class FileList(_FileList):
-    """File list that accepts only existing, platform-independent paths"""
+    # Implementations of the various MANIFEST.in commands
+
+    def process_template_line(self, line):
+        # Parse the line: split it up, make sure the right number of words
+        # is there, and return the relevant words.  'action' is always
+        # defined: it's the first word of the line.  Which of the other
+        # three are defined depends on the action; it'll be either
+        # patterns, (dir and patterns), or (dir_pattern).
+        (action, patterns, dir, dir_pattern) = self._parse_template_line(line)
+
+        # OK, now we know that the action is valid and we have the
+        # right number of words on the line for that action -- so we
+        # can proceed with minimal error-checking.
+        if action == 'include':
+            self.debug_print("include " + ' '.join(patterns))
+            for pattern in patterns:
+                if not self.include(pattern):
+                    log.warn("warning: no files found matching '%s'", pattern)
+
+        elif action == 'exclude':
+            self.debug_print("exclude " + ' '.join(patterns))
+            for pattern in patterns:
+                if not self.exclude(pattern):
+                    log.warn(("warning: no previously-included files "
+                              "found matching '%s'"), pattern)
+
+        elif action == 'global-include':
+            self.debug_print("global-include " + ' '.join(patterns))
+            for pattern in patterns:
+                if not self.global_include(pattern):
+                    log.warn(("warning: no files found matching '%s' "
+                              "anywhere in distribution"), pattern)
+
+        elif action == 'global-exclude':
+            self.debug_print("global-exclude " + ' '.join(patterns))
+            for pattern in patterns:
+                if not self.global_exclude(pattern):
+                    log.warn(("warning: no previously-included files matching "
+                              "'%s' found anywhere in distribution"),
+                             pattern)
+
+        elif action == 'recursive-include':
+            self.debug_print("recursive-include %s %s" %
+                             (dir, ' '.join(patterns)))
+            for pattern in patterns:
+                if not self.recursive_include(dir, pattern):
+                    log.warn(("warning: no files found matching '%s' "
+                              "under directory '%s'"),
+                             pattern, dir)
+
+        elif action == 'recursive-exclude':
+            self.debug_print("recursive-exclude %s %s" %
+                             (dir, ' '.join(patterns)))
+            for pattern in patterns:
+                if not self.recursive_exclude(dir, pattern):
+                    log.warn(("warning: no previously-included files matching "
+                              "'%s' found under directory '%s'"),
+                             pattern, dir)
+
+        elif action == 'graft':
+            self.debug_print("graft " + dir_pattern)
+            if not self.graft(dir_pattern):
+                log.warn("warning: no directories found matching '%s'",
+                         dir_pattern)
+
+        elif action == 'prune':
+            self.debug_print("prune " + dir_pattern)
+            if not self.prune(dir_pattern):
+                log.warn(("no previously-included directories found "
+                          "matching '%s'"), dir_pattern)
+
+        else:
+            raise DistutilsInternalError(
+                "this cannot happen: invalid action '%s'" % action)
+
+    def _remove_files(self, predicate):
+        """
+        Remove all files from the file list that match the predicate.
+        Return True if any matching files were removed
+        """
+        found = False
+        for i in range(len(self.files) - 1, -1, -1):
+            if predicate(self.files[i]):
+                self.debug_print(" removing " + self.files[i])
+                del self.files[i]
+                found = True
+        return found
+
+    def include(self, pattern):
+        """Include files that match 'pattera'n."""
+        found = [f for f in glob(pattern) if not os.path.isdir(f)]
+        self.extend(found)
+        return bool(found)
+
+    def exclude(self, pattern):
+        """Exclude files that match 'pattern'."""
+        match = translate_pattern(pattern)
+        return self._remove_files(match.match)
+
+    def recursive_include(self, dir, pattern):
+        """
+        Include all files anywhere in 'dir/' that match the pattern.
+        """
+        full_pattern = os.path.join(dir, '**', pattern)
+        found = [f for f in glob(full_pattern, recursive=True)
+                 if not os.path.isdir(f)]
+        self.extend(found)
+        return bool(found)
+
+    def recursive_exclude(self, dir, pattern):
+        """
+        Exclude any file anywhere in 'dir/' that match the pattern.
+        """
+        match = translate_pattern(os.path.join(dir, '**', pattern))
+        return self._remove_files(match.match)
+
+    def graft(self, dir):
+        """Include all files from 'dir/'."""
+        found = distutils.filelist.findall(dir)
+        self.extend(found)
+        return bool(found)
+
+    def prune(self, dir):
+        """Filter out files from 'dir/'."""
+        match = translate_pattern(os.path.join(dir, '**'))
+        return self._remove_files(match.match)
+
+    def global_include(self, pattern):
+        """
+        Include all files anywhere in the current directory that match the
+        pattern. This is very inefficient on large file trees.
+        """
+        if self.allfiles is None:
+            self.findall()
+        match = translate_pattern(os.path.join('**', pattern))
+        found = [f for f in self.allfiles if match.match(f)]
+        self.extend(found)
+        return bool(found)
+
+    def global_exclude(self, pattern):
+        """
+        Exclude all files anywhere that match the pattern.
+        """
+        match = translate_pattern(os.path.join('**', pattern))
+        return self._remove_files(match.match)
 
     def append(self, item):
         if item.endswith('\r'):  # Fix older sdists built on Windows
@@ -302,7 +529,6 @@ def run(self):
         self.filelist = FileList()
         if not os.path.exists(self.manifest):
             self.write_manifest()  # it must exist so it'll get in the list
-        self.filelist.findall()
         self.add_defaults()
         if os.path.exists(self.template):
             self.read_template()
@@ -341,38 +567,13 @@ def add_defaults(self):
         elif os.path.exists(self.manifest):
             self.read_manifest()
         ei_cmd = self.get_finalized_command('egg_info')
-        self._add_egg_info(cmd=ei_cmd)
-        self.filelist.include_pattern("*", prefix=ei_cmd.egg_info)
-
-    def _add_egg_info(self, cmd):
-        """
-        Add paths for egg-info files for an external egg-base.
-
-        The egg-info files are written to egg-base. If egg-base is
-        outside the current working directory, this method
-        searchs the egg-base directory for files to include
-        in the manifest. Uses distutils.filelist.findall (which is
-        really the version monkeypatched in by setuptools/__init__.py)
-        to perform the search.
-
-        Since findall records relative paths, prefix the returned
-        paths with cmd.egg_base, so add_default's include_pattern call
-        (which is looking for the absolute cmd.egg_info) will match
-        them.
-        """
-        if cmd.egg_base == os.curdir:
-            # egg-info files were already added by something else
-            return
-
-        discovered = distutils.filelist.findall(cmd.egg_base)
-        resolved = (os.path.join(cmd.egg_base, path) for path in discovered)
-        self.filelist.allfiles.extend(resolved)
+        self.filelist.graft(ei_cmd.egg_info)
 
     def prune_file_list(self):
         build = self.get_finalized_command('build')
         base_dir = self.distribution.get_fullname()
-        self.filelist.exclude_pattern(None, prefix=build.build_base)
-        self.filelist.exclude_pattern(None, prefix=base_dir)
+        self.filelist.prune(build.build_base)
+        self.filelist.prune(base_dir)
         sep = re.escape(os.sep)
         self.filelist.exclude_pattern(r'(^|' + sep + r')(RCS|CVS|\.svn)' + sep,
                                       is_regex=1)